Array 1 1-987 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZNA01000017.1 Moraxella atlantae strain CCUG 59586 contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 26 92.9 32 --.......................... AACTATACCTTGACTTAAACGACGGCGAAATT 59 28 100.0 32 ............................ ATCGAGCACCGTGGCACGTTGATGGGCTTGGG 119 28 100.0 32 ............................ GTCAATACGAGCAACTTGATTAGCAACTTCGG 179 28 100.0 32 ............................ TTGGCATTTTTGCTAGTATTGGCAGCCGCCTA 239 28 100.0 32 ............................ CAACATCATCGTCGAACAGACTATCACGCACA 299 28 100.0 32 ............................ AGCTTGCGCAGTCGCGTTGCCATTTTCAGCCA 359 28 100.0 32 ............................ TAAAATTAGGACATAATAAGCACATAAAGACG 419 28 100.0 32 ............................ ATTGTGCCAAAGTAAGGACTGTTGCGTAATTC 479 28 100.0 33 ............................ AAAAAATTAAACCACTTAGAACAGGTAGTATAT 540 28 100.0 32 ............................ TGATTTTGAGCCGCCCGAGCCCAAGGGCAAAA 600 28 100.0 32 ............................ TGACTGCCGACGACAAGCCGCTCAATGACATG 660 28 100.0 32 ............................ AGTCGCTCGATATCCCGTGGCTTAGACGGTGA 720 28 100.0 32 ............................ AAAGACGACTTTAAAAACGCATATGATAAAGT 780 28 100.0 32 ............................ ACTCTTAATCTTTTCGAGCGCGCGGTTAAAAA 840 28 100.0 32 ............................ TAGGCTTGTGACGTGCACTTGTGTGCCGTCCG 900 28 100.0 32 ............................ TTGGCTTGTAAACCAAGTGTGAATGGCTTTCC 960 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : | # Right flank : ATTTGGGTTAAAAAGCCACACCATTCAGCGTGGCTTTGTAGTGGTCAATTATGGCTGGGTATAGTGAGCATACTTTTTATACCACAGCCTAAGTTTAAATTCTGGTGAGTATTGATTTCTTACTTTTGTCATGAGATTATTCTTCTACTGAAGATGTTATAATCTCTTATTAACTGTCTTGGTTTATTATGCCATTACAATGTGATGATTGAGGTAACATTGGGCACGGATTTGACGATCGAAAAAGCCAACGCAATCGTCAATCATGGAATTTACCTATTTATTGCTGACGAAATTTATCACAGCAATGTAGATTGGCAACATATGGCTAACATCTATTCATGTAAAGATTTAACTTTAGCCACATTACAAGCATTAGCAAAATCATAAGGCTAGCGATGAAAATTGACCACCAACTTGCCGAACAATGGATTACCCCGCGCTCGCAGGTGCTGGACTTGGGCTGCGGCGATGGCTCACTACTCGCGCATTTGCAGCGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 199-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZNA01000041.1 Moraxella atlantae strain CCUG 59586 contig_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 198 28 100.0 32 ............................ GCCACCGTGAGCCATGACGAAATGCTGTATTG 138 28 100.0 32 ............................ TAGAAAACTACTTTATTTTACGCTCACTTGAA 78 28 100.0 32 ............................ ATTCGATGAGTTCGGCGTAGTCGTTCATGTTA 18 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 CTTCACCGCCACATAGGCGGCTTAGAAA # Left flank : GTTTTAATACTTATGGCATCAATAATATGTCAAATGACGTGACCGTGCCTAATTGGTAAGTTATAGTTGATTTTTGACTTCCTCCCCTCCCTAAAGTGAGGGGATTCCTACTGCTAGACGGTCAAGCCCAACCGCAAACCTAAGATAGTGGCAACCGCCCGTACGACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCAATTTAGTCTTAACTTAACTGTGGACTGTAAGACATCGAATATAGTGAGATGAGTGTAGCAAAACTTATCGCATTTAACCATTGCCTTATATCCACCGCCTGAAGTCGCAGGTTTACGGCAACGACAGATAAAGTAAGGGTGAACAACCCTTATTTTTTACTTAATAAAAACTTGTATATTTTTCAATAAGTTATCGTAGGGGTTAAATTATAGGGTAAAAATGGGTTTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCA # Right flank : C # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACCGCCACACAGGCGGCTTAGAAA with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 276-483 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZNA01000010.1 Moraxella atlantae strain CCUG 59586 contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 276 28 100.0 32 ............................ GCCGAGGTTTTTTATTGGCACGAGATTCACCC 336 28 100.0 32 ............................ TGTGCTAGATGGACGCAAGCTGTTTGAGTATG 396 28 100.0 32 ............................ TGAGTAAAAAAAATATTATTTTTCTTTTGGGG 456 28 92.9 0 ............G...........T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : TCTGCCGCTTCTTGGTTTGTCATACAGACTGTCTAATCCAAAAGCTTGATAGCGTCTGCGGGTGCGGCGCACGGTTTCGATGTTGATGCTTAGGTTTTCTGCAATCTCAAAGCTTTGTTTGCCGATGCGATATTGATGAAGAATGTAGAGCCGTGTTCTAGCTCTGGCTTTGCTTTGAGTCTTAGCTAGTTCACCAAAGTCATGGTCTTCTAAGCTGTGGATGGCGTTTAGTTTATTCATGTACCTATGATACTATATTTTATGGGTTTGGTATAA # Right flank : AGTGATACGCTCAACAAGCTGCACGAGCAAGCGGCAATCCCTGAAGCGATATTTGCGCTAGAATATGCAGCCGATGGCGCGACAAAGGTGGTCAATGTGATGTTTGACCATGCGGCAACGCCCATTGAGGCGACACCTTTTAAAGGCTTTAATAGCCCAAACTTAGACGATTATTTTGCCGTGACGCTAAAATTTAAGACGGTTTGATATTGCGTTTTGCTAGGCGGTTGTTTATGATTTGTTAAATAGAAACAATCGAGTAAGAATTATGAATATTAAAGCACTTGTCGCTTTTGTCGTACTCATTGCAATGGGTATTTTTAGTTATTCTTATTATTCTAGCAAAAAGCATGCGGAGCAGCTGGCGATTATGAAAGCTGAGACCGCCAAGACGCAAGCGGAAGTTGCGAGGATGCGTGCCGAGCAAAAAGAAGCCGAACAGCAGAGAATTGCTAGCCGAGCACCTCTTAATCAAGGAACGCAGACTGCATCAGCCACTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2122-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZNA01000028.1 Moraxella atlantae strain CCUG 59586 contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2121 28 100.0 32 ............................ TAGTCAATGAGATATTTGCCAAAGCGTCTGAA 2061 28 100.0 32 ............................ AATATTGTACCTAGCGGTAGCGCGTTTGCCTC 2001 28 100.0 32 ............................ GTTCAAAATCCATTTAACACGAGCGGCAAGAC 1941 28 100.0 33 ............................ TAGCGATTACTAGGGTCTATCTCTTGTTTCCTT 1880 28 100.0 32 ............................ TGTTAGCGCATTAAACGCTGCTACGGTTTTGC 1820 28 100.0 32 ............................ TGTTGGCGTGTTGTTGATACCGAGCCGTGTTG 1760 28 100.0 33 ............................ AGAACCACAGCTTGCACACATATCCAAATAATC 1699 28 100.0 32 ............................ CCACGAGAACAAGCTGAACTTGACCTTATTCG 1639 28 100.0 32 ............................ CCACGAGAACAAGCTGAACTTAACCTTATTCG 1579 28 100.0 32 ............................ TTATCGATAGCTTCGGCATTTTCAAATGCTAG 1519 28 100.0 32 ............................ GCTAAATAGCTATTACTTAAAAGGCGATTATT 1459 28 100.0 32 ............................ TTTTTTCTTGCCACGCGCAAACTCGTGGCAAA 1399 28 100.0 32 ............................ TGATTCCGCACCATGCCATTACTGTCAAGTAA 1339 28 100.0 32 ............................ ACAAGTTGGCGTAACTGCTGAGCAGTTTCGCA 1279 28 100.0 32 ............................ CCACAGAGGAGGCGGTGAGGTGTGATTTTTCA 1219 28 100.0 32 ............................ ATTATGCAGGCAGCGGTTGATTGTTACGTCTC 1159 28 96.4 32 ............A............... CCCTGTTGCTTCCTGTAGCATGGCAGACGCAT 1099 28 96.4 32 ............A............... ACATGCCCATAACCATGTATCTATAGCTTCTG 1039 28 96.4 32 ............A............... AATGCGCTCATTAAACATACGTATCTCACCAC 979 28 96.4 32 ............A............... TTGAGCAATTCCGTGACAAAACCGTTGTCTTG 919 28 96.4 32 ............A............... CAAGTGCCCACTAATTGCCACAAGCACTGCTG 859 28 100.0 32 ............................ TTGTTTTGACATCGATGCTATAGTTAATTGCC 799 28 100.0 32 ............................ CCGTTTTCGGGGTCAAAGTCAAAATCGGCGTG 739 28 100.0 32 ............................ GTGACAATGTGTTTGAGGTGTTTACTAGCGCG 679 28 100.0 32 ............................ TCACAGACGTGTATTTCATCAAAATTAGTGTT 619 28 100.0 32 ............................ ACAATTATTTAACGTGAGCATGCGCGTGCGCA 559 28 100.0 32 ............................ AATTCAACAGCGGTAAAACTGGCTAAGCTGTC 499 28 96.4 32 ............A............... TCAATTTGCGCGTACAACTGTGTTTTTACGGC 439 28 100.0 33 ............................ CGGTGGGGTTTTTACACGCTCGCCAATACAATC 378 28 100.0 32 ............................ TTTGATTTCTTCGGCTTGGTTTTTGACTTGGT 318 28 100.0 33 ............................ CGTATACCAAGTTCCACTGATAATGCCTTTTTC 257 28 100.0 32 ............................ AGTTAGTTAGTTTATCAAGAGAGCTTATCTCG 197 28 100.0 32 ............................ ATCCGTCTGCTTCTGTTGAAGTGTAAAAACGG 137 28 96.4 32 ............A............... GCCTGACCGATGCCATCAGCAAACCGCTGTCG 77 28 96.4 0 ............A............... | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.2 32 ATTCACCGCCACGTAGGCGGCTTAGAAA # Left flank : GCTACTTAAATTTGACCATAAAAAAACGAGTAGTTGTGTATTTTTGATCTCTTATGGGTGCCATACGGGCAATGATATTTATTTTTAAGCGTCAAGTGGTGTCGCCTTGATGGATAGCAGTTTTGCCACCACTACCGATGAACTTGACAAATTGGCTTTGCCTGTGTGGCTCGCGCGCTTGATTGGCTATGCACATCTGACGACTGTTAAGGAAGTGGGCGACAAAGCGACAGGTCATATTGTGGTAAAACGCTACCGCTATAAGCGTTGTGCCAAAAAAGTGGCGAAATTTGCTCAGCTTAAAGGGATTAGCAAAGAAGCGTTGGCGCATTGGTGGTATCAAGTCTAGCCTAAGAATAAGGGTGAATAACCCTTATTTTTTACTCAATAAAAATTTACATAAATTTCAAAAGGTTATAGCAAGGTCAAAAATGTAGGGTAAAAAGGTATTTTTACTTGGTAAGCCTTGCTATGGCTGCTTTTTTTAGGATAAAATTCCT # Right flank : AGTTTTGCGTTGTTGATGCTATAGTAGCAAATAATACCAAACCCAACAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACGTAGGCGGCTTAGAAA # Alternate repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCGCGTAGGCGGCTTAGAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //