Array 1 7123-8737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGE01000027.1 Chromobacterium piscinae strain ND17 Contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7123 29 100.0 32 ............................. CGTTCCGATTGGGACAACCCTGACGGTTCTGG 7184 29 100.0 32 ............................. GATGGAAAAGCTTTGGCCGTTTGCCAGTGTTG 7245 29 100.0 32 ............................. GCACCGTGTTCCTGGTCAGCCACGACCGGGCC 7306 29 100.0 32 ............................. CCAGCGCGGCACGATGATGTTCGAGCGTTCCG 7367 29 100.0 32 ............................. TCTCTCTCGAAAAAGGCCAAAAGCCGTATGAA 7428 29 100.0 32 ............................. ACGCTTGCATAGTTCCACTCTCTACTCCCTTG 7489 29 100.0 32 ............................. TTCGTGGTGGCGAAGCTCTTGCACTCTTGAAA 7550 29 100.0 32 ............................. GCGCGGGGATTCCAAAATCATTCCACTTGCTG 7611 29 100.0 32 ............................. AAATCGCCGTCATCATTACCCTGTTTGTTGCG 7672 29 100.0 32 ............................. TACCGCTGCAATCGGAAATTCAGCAGTTGGAA 7733 29 100.0 32 ............................. ACAGCGAAATCCGCGCCTTCCCGGCCCGTATC 7794 29 100.0 32 ............................. GCTACGTTTGTACGCGATCTGACAACTTATCC 7855 29 100.0 32 ............................. CCGCTAGCCATAGTCGCGCGGCCTTGCATTAG 7916 29 100.0 32 ............................. AGGGTAGTTTTGTTTGCGCGGCAGAACTGTTT 7977 29 96.6 32 ............................C TGTTCCCGGTCATCGAGGTGGATTCCGCCCGT 8038 29 100.0 32 ............................. AAATGAGCAAACTCATGGGCAAACGTGCCGGG 8099 29 100.0 32 ............................. CAGTGCCGCGCTGGCTATGGCTGCTGCGACGG 8160 29 100.0 32 ............................. GGCGATTCCAGCAGTCCAGATGGCGAGAAATG 8221 29 100.0 32 ............................. AACGGGATTTCTACAGGAAGAACTGCATGAAA 8282 29 96.6 32 ............................C CCGCCAGGCGGCGGGCAAGTTGGGCGGGCGGC 8343 29 100.0 32 ............................. AAGTCAATCGAATATCTGAAAGAAGCCAAAGA 8404 29 100.0 32 ............................. AGCCTGATGGATGACTACCACTGCATCAAGGT 8465 29 100.0 32 ............................. ACAAGCAGAAAAATCCGATGCAGCCAACACTG 8526 29 100.0 32 ............................. ACTGACTCGGCTAACTCTTTAGCTTTAATGTC 8587 29 100.0 32 ............................. GCGCTGTAATCATGGCCTACAGCGTCGGTTCG 8648 29 100.0 32 ............................. ACGATATTGAGGCGGCAATTCAGCCAACGCCG 8709 29 93.1 0 ............T..............T. | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.5 32 GTGTTCCCCGCGCGAGCGGGGATGAACCG # Left flank : AACCTGCTGGCGCAATGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAAAGCCGGCTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGTCCGCTGCACCAGCAACTGGCCGCCCAGGCCATGACCGGATTCAGCTGGCTCAACCCGGAACGCACTTTGCAGCAAACCCGCTTTGCCGACGGCAGCCTGCTCACCGCCAACTTTGGCATGGCGCCCGCCGCATACGGCAAACAGACCCTGCCGCCGCAAAGCCTGCTGGCCCAGCCGGCCGGACAAGCGCCGCGCCTGTTGCGCGTGGCGGATTGCGCGGGAAATTAGCGCGGCGCGATCATTCCGATGGCGTTTTCGCGTGGTAAAGTGGTCTAGATAACGGCGGCAGACGCTGTGGTCGCGATGATTCAGGCGCTGAATTTTTAGGCGTAAAAATCGGTAGGATTTTGCTTGATGTTTTTGTCTTTAAAAATCAGCTGCTTGAAATTGGT # Right flank : GGGCCAGAGTTTGAGGTCGAGGTTGTCAGCCTGTGCTCCTTATGCCTGCGTGCCTGATTCTGTATGCCTCGCGCAGTATTTTCATGTGATGAATTTCTTGTGGAGACAGTTGAAAAGCGAAATGACATTGGATTTAAATGCTGCTAGCCTGCGCGCTTAGATCATGTCTATTGAGCTGACTGGTTTGTGCCGGAGGAGCCATGCAAGCGTATTGGCGATACAGGGGGAAATCCTCGCCGCGTGACGATGCGGGCGAGCGCTGGCATTTGCTGCCTTTCCACATGCTCGACGTGGCGGCGGTGATGGAGGCTCTGCTGGATCTACGGCCGATTTGGGTGGCGGGTTGCGCAGCCAGCCAGGGCTGGAGCGTGGAGCAGTTCCGCGCGGCAGCGGTGTATTTCGCCATCTTGCACGATACGGGCAAGTTCGCCCGCAGTTTTCAGGCCATTCTGCCGCCGGGTTGTGTCGATTTGGTGCCGGTGGGGCGCGCGCCGCAATAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18057-18450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTGE01000027.1 Chromobacterium piscinae strain ND17 Contig27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18057 29 100.0 32 ............................. TGAATGCTCAATCCGCTACGCCGTCCATTCTT 18118 29 100.0 32 ............................. CCGCCGGAAACAGTTGATAACACCACGTTCAA 18179 29 100.0 32 ............................. CCATCCAGGCGCAGCGCCTCCTCCACTTGATC 18240 29 100.0 32 ............................. TCTTTTCCAATTTATGGGATGTGTTTGTCGAG 18301 29 100.0 32 ............................. GCACTTGCTCGGCGTTCGAGTTGGTTGCGGCG 18362 29 100.0 31 ............................. CGGCTGGAGCAGGCCAAAAAACACTCCGCAC 18422 29 79.3 0 ...........GCC..AT...G....... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.0 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCCGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGCTCTTGGAAATCCGCGCCGGCGTTTACGTGGGCAACTACAACCGCAAAATCCGCGACTACCTGTGGCAGCAGGTGGAGGAGGGGCTGGAAGACGGCAACGCGGTGATGGCTTGGCAGGCCGCCACCGAGGCCGGCTTCGACTTCGTCACCCTGGGCGCCAACCGCCGCATCCCGGCCGAGTTCGACGGCGCCAAACTGGTGTCTTTCCTGCCGCCGCCCACGTCGGTGGATACGGGAGAATAAGGCGTAATCGATATGAGTTGAAAGGGGGATTTGGCTCTTTAAAAATCGGTAGATTTTGGAGCGGTGTTTTTGTTCTTTGGAATCAGTTGCTTGTAATTGGT # Right flank : GGCTTCCGGCGCACTATATTCCGCCTTGGGCTGAGGCTTAGCCTAGCGCGCGTTCCAGCCAGCGCCACAGCTCGGGCGCGGTAAAGTCTGCGATGACGGCGGCGGCGCCCGCGTCCAGCAGCGTTTGCGGCGGCAGCGCGCCGGCGATGCCGTAGCTGTGGATGCCGGCGGCGTGGGCGGCGCGCATGCCGGACGGGGAGTCCTCGAAGGCGCAGGCGCGCTCGGCACGGCCGCCAAGCCTGGTCAGGCCGGTCTGGTAGGGCAGGGGGTGCGGCTTGCCGTGCGCCAGCTCGTCGCCTATCACCAGCGCGTCTACCCGGTCCGTCAGGCCCAGCCCGGCCAGCATCAGTTCGGCGTTGGCGCGTGGCGCATTGGTGACCACGGCGATGCCGACTCCATGTCGCTCTGCCCAGTCGAACAGTTCCGGCGCGCCCGGCGTCGGCGTCAGCCGGGTGACGGAGTCGCGGAACAGGCGCTCCTTGCGTTCCGCCAGCTCCAGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //