Array 1 394737-398784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PFXK01000002.1 Vibrio sp. HA2012 contig2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 394737 28 100.0 32 ............................ CAATCATGGCGCGCCGATGTGTCGGCCATGTT 394797 28 100.0 32 ............................ AACTAAACGCGCGCAATATGTATTCGAGAGAT 394857 28 100.0 32 ............................ CAAGCGCCAAACCACCCTTATAAGCTGCATCA 394917 28 100.0 32 ............................ GCCTCACCAAGCATATGCTTTGATGCCTTTGC 394977 28 100.0 32 ............................ ATTACGCGCAGCAAGCAAGGTTATATATGCGT 395037 28 100.0 32 ............................ AGCCGTTACCGAATCGGTTTATCTTGGCAAAT 395097 28 100.0 31 ............................ ACTTAGCAAACGTTTTAGCAAATGACACGCC 395156 28 100.0 32 ............................ TTTCGAGCTTGTTCAAGTTCTCCATCGATAAT 395216 28 100.0 32 ............................ AGACGCAAGGTCTTGCCTGTACTTCTGCCAAT 395276 28 100.0 32 ............................ TCCATTGTCATTGCTTACTGCAGTTAGCCCGC 395336 28 100.0 32 ............................ CTTGCGGACACAGCGAGCCAATCTGCATGTAA 395396 28 100.0 32 ............................ AAGTTAAAACTGGTTACGCCAAGAAAGAAACC 395456 28 100.0 33 ............................ AGTAATTGAACTCGTACCGGATTCGAGCGACAT 395517 28 100.0 32 ............................ TGCAAGTGATTCGACATTTGAGTACCATTCCC 395577 28 100.0 32 ............................ TTTCAACTTTAAGCCGTTTTAGATTCGATTGT 395637 28 100.0 32 ............................ AATAACTTGTTGAGTAAAAGAATGTTTTTACT 395697 28 100.0 32 ............................ ATCTACTAAATGTGCCAACGGACTAACGTTCG 395757 28 100.0 32 ............................ ATTCTGAATACTGCCTGTAAAATCGGTTAACC 395817 28 100.0 32 ............................ AAACGGAAAATTGGTAGCTATGATTAATCAAC 395877 28 100.0 32 ............................ TAGATAATGTTTCTTGCCCAACATGTAATCAC 395937 28 100.0 32 ............................ GCTATATCAGACAATATTGACGCCCTAAGCAG 395997 28 100.0 32 ............................ TTGCTGCCCCGAAAGTAGAGTTTGCTGATGCT 396057 28 100.0 32 ............................ TGAAAGACTATGGCCAAAACCCAAAGCAGTTC 396117 28 100.0 32 ............................ CAGATAGAATTTTCGACACTTTCCCCAATCCA 396177 28 100.0 32 ............................ GATCAAACGTATGAGGGGGCGACGCGCACACC 396237 28 100.0 32 ............................ ATATAGACTGTTCGCCAAAGAGTGCGATCAAC 396297 28 100.0 32 ............................ GCCCTGCATAAAGACTGGTGGCACATCAACAA 396357 28 100.0 32 ............................ ATCTTTAACAGAAGTATGTAAAAGCGACTCAA 396417 28 100.0 32 ............................ GCTTCATGCAGCATGGCATGGTTTCCGGATAC 396477 28 100.0 32 ............................ TAGCAAGGATTGTGTTAGCAAATAAAGTCTTT 396537 28 100.0 32 ............................ GCAGTGAGGGCAAGTTGTGTCACTCTCTCTTA 396597 28 100.0 32 ............................ ATAGGCTGAAGCTGACTCAGTACCCTCTCTTT 396657 28 100.0 32 ............................ CAACTGATCATCAGAACCGCTAACAATAATTC 396717 28 100.0 32 ............................ GACAAACCCACTATACACAAAGGGCGACAAGC 396777 28 100.0 32 ............................ ATCAATAATGGCATCAATTTTTGCCAACTGAT 396837 28 100.0 32 ............................ ATCAGGGCAAGTTCTATCTGAATGCCCGCTGA 396897 28 100.0 32 ............................ ACTTTAAATAGACGTGATGCTTATTTGGGTAG 396957 28 100.0 32 ............................ GTACTGTAAATACGGCAAATGACGTACTGTTA 397017 28 100.0 32 ............................ ATTTGAACCGTGTCTAAATGAAACCGCCATTA 397077 28 100.0 32 ............................ AAGTTGGAATAGACGTCCAATCTGGCGTTAAT 397137 28 100.0 32 ............................ GGGAAAAAATGATAATCAAACTTAGACAACAC 397197 28 100.0 32 ............................ ATGCTGGAAACTTACACGTAATCACCCTTTCA 397257 28 100.0 32 ............................ TTAGAGCGGCTTTCACCGCCCATTAATAATTA 397317 28 100.0 32 ............................ AAGTTGATGATGCTCGCCGAGCTGCTTACTTC 397377 28 100.0 32 ............................ GCCTAAAGCAAGCCGAGAAGAACGCCCGTTCT 397437 28 100.0 32 ............................ GGCTTGAACGTCAACGGCAGCGGTAAGGAACC 397497 28 100.0 32 ............................ ATTCGTAACACTTGGCATCAAAACCTAAGTTC 397557 28 100.0 32 ............................ GTCAACGTGGGGCTTTATACGATTAAGGAGCT 397617 28 100.0 32 ............................ TACGGCGTAACCCGGTGTTGAGCCGAGAGCGA 397677 28 100.0 32 ............................ AGCCGTAACGCTTAACGCACACTAGGTTCCAG 397737 28 100.0 32 ............................ ATAATGATTCGTTTGATGTGGACGTAGATAAG 397797 28 100.0 32 ............................ ACTAAGAACCGACCGCAGACGCGCAGAACGCC 397857 28 100.0 32 ............................ ACCCAAACCATCACCAATAACACCACTCAAAC 397917 28 100.0 32 ............................ TTGTATTTCACCAACTTTTTCACCAACCCCAT 397977 28 100.0 32 ............................ ACTGCCCCAAATTACCAATAGCACCAAAATCT 398037 28 96.4 32 ........T................... TATAATGATTTCGTAGGTGTCTTTGGTAACAC 398097 28 96.4 32 ........T................... TTGTTCCGGATTGGCGATATCAAAGAGTTCAT 398157 28 96.4 32 ........T................... TGCTTTTGCAGAGGGTGAGGTTGATGCTATTT 398217 28 96.4 32 ........T................... ATCACAGAGCAATCACCAACCGGAAAAAAATG 398277 28 96.4 32 ........T................... AAACCACCATCTTGGACATTTTGTGCGTGGTA 398337 28 96.4 32 ........T................... CCCGCTTGATGAGGCGCAAAATCTTTCACCGC 398397 28 96.4 32 ........T................... CAAGTTTGGGCGGATTCAAAATATGATGATAT 398457 28 96.4 32 ........T................... AATGAAGAAAGCGACGAAGAACTGGCCCTTCG 398517 28 96.4 32 ........T................... TCTCACTCAAGTTCAGAATCATTCATTAACGC 398577 28 96.4 32 ........T................... TAACTTAACGCCATCAGCGAAGCGTACAAGAG 398637 28 100.0 32 ............................ TCAACAATATTGATATCGGAATAACCAGCATT 398697 28 100.0 32 ............................ CGGGAACACCGCTTTGGCCGTGGATGAGTATG 398757 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGATGAGGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAACGAATTGAACGAGATATGCAGAAAAAAGCGGACCTTTGGGCGGCTAAATCTGGCAGGTCACTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCGCCTGATAAGAGTAGTAGATTTCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAGCTTAATCAACAAGGCCGTCTGGGGACTGTCCCACAATTTTAACCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACATAGAGTTATAATAGCTGGTATTTGACAGGGTAAAAACATTATTTTTAGCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATT # Right flank : AGCTATCATCGTTAGAAAGCCATCTATATTCACCTATCCACCAAATAATCACCGCTCTTAATTTGGATTAGTTCTGATGTATCGTAGTTGTAGATATATGCCCAGGCTTGGATATTATTGCTTTCGGGTAAGGTGATGGTGGTTTTTTCTCTGATATATTCGTGTGGCCGGGGGAATGTATCTGTACACTCTTCGTACTCATCGAGTCGGATAAACAATTTTTCCTGATTCAGGATCCGATATAATTCTCCATAAACCTTATCACTTGGTTCCGTTGATTTGATGGCTCCCGGATAATGACCAATATCATATAACTTTCCCTGCATGCTTCCGACAGAAACATATTCACAATATTGAGCAAGAACTTGATGCATGGCGGTTGCTGTTTCTTTACGCAGTGTTCCGTAGACAAAAATAAAATCAGTAGTCACTGTTTTTTTCCTTTTTTATATAATAACACGGATAATTTTAAGTTTTCTTTTTACGGTACTGCTCCGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //