Array 1 210501-208822 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFK01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain 3156 3156_1_length_1108001_cov_19.4646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 210500 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 210439 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 210378 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 210317 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 210256 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 210195 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 210134 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 210073 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 210012 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 209951 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 209890 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 209829 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 209768 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 209707 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 209646 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 209585 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 209524 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 209462 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209400 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 209339 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 209278 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 209217 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 209156 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 209095 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 209034 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 208973 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 208912 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 208851 29 100.0 0 ............................. | A [208824] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229040-227182 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIFK01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain 3156 3156_1_length_1108001_cov_19.4646, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229039 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 228978 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 228917 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 228856 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 228795 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 228734 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 228673 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 228612 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 228551 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 228490 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 228429 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 228368 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228307 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 228246 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 228185 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 228124 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 228063 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 228002 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 227941 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 227880 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 227819 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227758 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227697 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 227636 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227575 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227514 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227453 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227392 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227331 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227270 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227209 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //