Array 1 47181-45532 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000117.1 Acinetobacter baumannii strain ABBL049 contig-5000074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 47180 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 47120 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 47060 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 47000 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 46940 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 46880 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 46820 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 46760 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 46700 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 46640 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 46580 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 46520 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 46460 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 46400 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 46340 29 96.6 31 ............................C GTATACATGCACATCAATACGATATCCCGAT 46280 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 46220 29 100.0 31 ............................. GCAGCTACTCGACATGTTGGTAGGGCAGATG 46160 29 96.6 31 ............................C AGTCGGCTGGTGCTAATTGAATAAAATCGTT 46100 29 96.6 31 ............................A GATTGAGGCGATTTTTATCGCGGACATTGCC 46040 29 96.6 31 ............................C AGTCCCCGCTTTGAAGCATTCCCATCAGTAC 45980 29 100.0 31 ............................. CACAGCTATCGTCTGGCTGCCGTCGCGTAGA 45920 29 96.6 31 A............................ TATTATTAAACGGGAAAAGTATATTCTTGCT 45860 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 45800 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 45740 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 45680 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 45620 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 45560 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 28 29 97.8 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : | # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTACA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-1883 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000140.1 Acinetobacter baumannii strain ABBL049 contig-77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 61 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 121 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 181 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 241 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 301 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 361 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 421 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 481 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 541 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 601 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 661 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 721 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 781 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 841 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 901 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 961 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 1021 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 1081 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 1141 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 1201 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 1261 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 1321 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 1381 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1441 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1501 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1561 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1621 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1681 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1736 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1796 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1857 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.2 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : | # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 871-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000118.1 Acinetobacter baumannii strain ABBL049 contig-54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 870 28 100.0 32 ............................ ATAGCTCGTAACGCCTCCGAAACGCTAATCAA 810 28 100.0 32 ............................ TTATTGAAAAGCTAAAGAAAACTAAAACTGCA 750 28 100.0 32 ............................ AAAACGTTGAACATTAGTAAGTGTTAGAACAC 690 28 100.0 32 ............................ TTACGATGGCCAACAGAAATATTAGACATATA 630 28 100.0 32 ............................ GATAAAGGTTGTATGCGCTCTAAAGCGTTAGT 570 28 100.0 32 ............................ AATCCAAACAGCAAAACCGATGATACCTGCAA 510 28 100.0 32 ............................ AGTGGGCTTATATCTCTTCTATAAAAAACGGA 450 28 100.0 32 ............................ AATGCTGCTGTTGACGTGGCTGGTCCAGTTGC 390 28 100.0 32 ............................ GGAGTCAGGCACACTATTAGATAGCAGTGTGC 330 28 100.0 32 ............................ ATGATGAACCTGTCTTACCTTCAGATCCTTCT 270 28 100.0 32 ............................ AAGCATTTCAGTTGCACCAAGATGAATACTTT 210 28 100.0 32 ............................ TCAAGTGCAGATGCAGCCTAATTATTCTTCTT 150 28 100.0 32 ............................ AAGAACGTTTGGCAGCAAAAGGAACATTACCA 90 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5961-6768 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000118.1 Acinetobacter baumannii strain ABBL049 contig-54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5961 28 100.0 32 ............................ TTCACCGTCATAACCATCTTGGAGCCATTTGA 6021 28 100.0 32 ............................ TTAGTGATTGAACCAGATGTATTAATGGACTT 6081 28 100.0 32 ............................ TTCTTCGCAGATTTTTTTGCTTGAGTTGAGTT 6141 28 100.0 32 ............................ AAAACGACCTTGTGACTCTGTGAATTCAATCT 6201 28 100.0 32 ............................ AGTTGCAACTTTAACAACTGACGGTACTGCTG 6261 28 100.0 32 ............................ ATAGTGGAAATACACGTAAGTTATTGATTTAT 6321 28 100.0 32 ............................ TGTTGTTAGGGCTATTTCTGCTTTATCCGATA 6381 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 6441 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 6501 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 6561 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 6621 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 6681 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 6741 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [83.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 631-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000066.1 Acinetobacter baumannii strain ABBL049 contig-2000054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 630 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 568 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 508 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 448 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 388 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 328 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 268 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 208 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 148 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 88 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : A # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-689 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLED01000067.1 Acinetobacter baumannii strain ABBL049 contig-2000058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 1 29 89.7 31 ....G.......CC............... TGAGCCGCAACCATACGGTCTATGACTTCCA 61 29 89.7 31 ....G.......CC............... TAGCGCCCTGCTCTATGTTGTCACTTCCGAA 121 29 86.2 31 ....G.......CC..............T CCAAGTGAATCGGCTCCTAATGCAAATGACC 181 29 86.2 31 ....G.......CC..............T GAAAACCAATATGCTGCCTAATTGCCATAAG 241 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 301 29 100.0 31 ............................. TATACAGCACCGCTTAGTGCGACGCGGTCAT 361 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 421 29 100.0 31 ............................. TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 481 29 100.0 31 ............................. GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 541 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 601 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 661 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =============================== ================== 12 29 93.4 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : | # Right flank : | # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //