Array 1 5581-6278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOFQ010000005.1 Pediococcus pentosaceus strain FAM 23908 FAM23908-i1-1_scf5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5581 36 97.2 30 ...........G........................ TATCGTCTGAGTGATCATCTTGTAATTTAA 5647 36 97.2 30 ...........G........................ ACCTAGAAGGCGAATTAGCAAACATTCAAG 5713 36 97.2 30 ...........G........................ GTGGTGACACACCGGTAACAAAGAAGTTCA 5779 36 100.0 30 .................................... TGCTACATTCTATGGCCAAGATGTGTCGTT 5845 36 100.0 30 .................................... TAAATTTCGCCATTAAGCTTCCTCCAGTTC 5911 36 97.2 30 ...........................C........ TTCTGCCGGCGGAATCCACTAAATTTGTTT 5977 36 100.0 30 .................................... TTATTAAAAAGTGCCTTATCTCCTGTCACT 6043 36 100.0 30 .................................... TTTGACCCAGTCGTTGCTTGAACCATCTGA 6109 36 97.2 30 ............C....................... CGCGCGCCGTTATATCTGAATTTTCTATCA 6175 36 100.0 30 .................................... TTAAAAACTAAAACGTCTAATGATAATCTG 6241 36 91.7 0 ...........G.................A..T... | C,A [6269,6271] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.0 30 GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTAC # Left flank : CAGAATTTAGTTTTAACAAAATATTTGCGCCAAATTGAAAAGTTATTTTTACGGTCTGTTACAGATGAACAGCAAAATAAAATTCATGATGAAATCAATCGTATATTTAACATAGTTTCCGAACAATTATTTTTACTAGATTTACCGATAGAAGTTAACTTTGATTTTGATCTTAAAAAGTTATTTAAATATTGCGGGATTCGATTTGATCCAATTTTAATTAGTAAACCATATGGTATAATTGAAACAATAATTAAAATTCATGAAACTAGTAATCTTGACTCGTGTATAGCGTTAACTAATGTAGCTCATTATTTAACGCCAGTCGAATTTGAAGAACTTAGCCAGTTAGTCAAAGAGACGAATCAAAAAATACTACTAATCGAATTCACAGAAATAGAAGAGCAGAGCTTCTATGGAAACGCTGAATTCTACTACATTGATACTGATTTTATTGATTGGCACAACTGAAACCATTATTTTTTTATGAGAAATTAATG # Right flank : CAAACTGTACCTCCGCAACAACTTAGCCAGCTGTTGTAATTTTCCACAACTAGTTCGACAGTCCAAAATAACAAATTAAAAAGAATCATTTTAGCCACTAATACTTAGTGAAACTAAAATGATTCTTTTTGTTATTTAATTACTAACGGTAAAATAACGACCGAATTCATTAAAATATGAGCAATCATCGAAGTTTGAATACGGCCGGTCTTTTTGTACAACCAGCAGAATAGCAAACCAATGGCCGCATATAGAAAGATGTGACTATCGTTGTGCATAAATGCAAAGGCTAGACTAGAAATGATGGCCATGACGGTGAATCCTAGTGTGGAATTAGCTCCAAACATCGCACTGAGATTACCAAATAAAACTTTTCTAAAAACCAACTCTTCCATGATTGGAGCTCCCACGGTGATCGCTAAAATGAAAAATGGATTGGTTTTAGCCAAAGTCACCAAGGTTGCGGTGTTTTGAGAAGTAGGATTACTTCCAAAAATAAT # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTAC # Alternate repeat : GTTTCAGAAGAGTGTTAAATCAATAAGTTCAAGTAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //