Array 1 190703-190063 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATGZ010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5437 NODE_3_323219_29_7299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190702 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 190641 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 190580 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 190519 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 190458 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 190397 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 190336 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 190275 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 190214 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 190153 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 190092 29 96.6 0 A............................ | A [190065] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 208449-206835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATGZ010000003.1 Salmonella enterica subsp. enterica serovar Typhimurium strain HS5437 NODE_3_323219_29_7299, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 208448 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 208387 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 208326 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 208265 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 208204 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 208143 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 208082 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 208021 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 207960 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 207899 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 207838 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 207777 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 207716 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 207655 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 207594 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 207533 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 207472 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 207411 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 207350 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 207289 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 207228 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 207167 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 207106 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 207045 29 96.6 32 ........A.................... CAGGTTATGCGCAAAAATTAATTCATATTATA 206984 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 206923 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 206862 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //