Array 1 353665-354419 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JXCF01000001.1 Staphylococcus gallinarum strain DSM 20610 contig_1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    353665	    36	 100.0	    30	....................................	GGGTTTTTATTATGTCAAAAAACAGCAGTT	
    353731	    36	 100.0	    30	....................................	GTAATCCAGATAAGTTTAAAGGTCCTAAGG	
    353797	    36	 100.0	    30	....................................	CCTCCATTACTTAAAAACTATAATCGCGCT	
    353863	    36	 100.0	    30	....................................	CAAAAGATAGATATAGATTGATTCATCTAA	
    353929	    36	 100.0	    30	....................................	TCTTCCGTAATTTCTTCCTCGACTTCGACT	
    353995	    36	 100.0	    30	....................................	AAAAGAAAATCATCGGTATGTATTTAAATA	
    354061	    36	  97.2	    30	...................................G	TACAAAAGATTGAAGATTACATTAAGTTTA	
    354127	    36	  97.2	    30	...................................G	GGATTTCTTGAAAGTCTTATTAAACCATTT	
    354193	    36	  94.4	    30	..............................A....G	TAGAAACAATTAAGCAAAATCTTGAGTGTT	
    354259	    36	  97.2	    30	...................................G	ACCCACAACATGTAGCGTATGAGTGTTCAA	
    354325	    36	  88.9	    23	............................G.A.T..A	GTTAGCTTTGACTGAAAAAACAG       	Deletion [354384]
    354384	    36	  91.7	     0	............................G.A.T...	|                             	
==========	======	======	======	====================================	==============================	==================
        12	    36	  97.2	    29	GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC	                              	       

# Left flank :   ATTATCAAGCAAAAGAAAAAGCATTTGTTATTTATTTATATCCAGAAGCTGGTCTTAGTATAAAAGAACAAATGAGGTTTAGGAAAGTGCTAAACGACTTACCTATTCCAGTTATTGTTTTAACTGAATCACCATATTTTTTATCTGAAAGTTTTAAAGGACTAAATTATTTTATTGATAATGTTCAAATGATTACCGAATCATTTTTTGAAAATAGCTATTGGAATGCTCCGATTAATTTGGAAAAAGAACAGATTGAAGAAAGGTTGGAATTTTTATTTGTAAAATATTGTTCAGTTTTAGAAGTTAAACCGACTATTTCCAACTATTTGCTTGCAGATATCATTGTTTTTGATGATGTTGATCTTTATATCATTGTTTCATTTTTAAAGCATTGTAATCTAGAGTATCAATTGGATATTGATAAATCAAAAATTTCATTAGCATTATCGACGTATCTATTTCTTTAATTATTATTCAAGTATATAATTGTGCTAGAG
# Right flank :  CCATTTTCTAGCTTTTTTCTTCGATAATACGGTTTTAAAAGCACCTTGAACATCAACAATTTCCTTGATTGTAAGTTGTTGATGTTCATTTAATAAATTAAATACACCAATTTGTTCTTTAGAAATTGTCAAATCTTCCTTAAGTAGAGAGTTATTGATTGTATCAATTGTTGCAATGAAATAAAAGTTAATAGTTAAGGTAGATATAGATTTTATTATACATTTTTCCCCTCTGTATATACTATGTTTCTCTTGGGTGTACTAAAGTGAAGAAATAGCATGCTATTAGCATATTTGTTTCATTGACTAATTTTCAGATAAAATATATACTATTTTCCAACGGTTAAACTAGTATATATTAGTAAAACTTAATAAAAGGTAATTATATTTGTTTGAAGCATATCAAAAATGATGCGAGTAAAACTTTAGAATTGAGATGAAAAATTACTATGATTAATATGCTCGGGTACAGAGTAAACCATTGGATTATTTCATAAAAT

# Questionable array : NO	 Score: 5.95
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.88,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:74.29%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.60,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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