Array 1 73987-75905 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTS01000009.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3308 NODE_9_length_189616_cov_4.8052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 73987 29 100.0 32 ............................. GCGATCGGTCCCCGTACTGGCGGGTAAATCAG 74048 29 100.0 32 ............................. CGTAATTGGTAGTTCATTAGCTCATTTCATAT 74109 29 100.0 32 ............................. GCATTGATGTAACACTCCTTAACTGCGGCGGC 74170 29 100.0 32 ............................. GAACAGATCGCGCTCGGCGACGCGGCGGTTAT 74231 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 74292 29 100.0 32 ............................. ATCGACGTGTACAAAAATGATGCAATTCGTTT 74353 29 96.6 32 ............................C GTAGAAGACGACGTAACAAACCGCATTTACAA 74414 29 100.0 32 ............................. CTCCGGCGCAACCACTTGCTTAACGTCACTTG 74475 29 100.0 32 ............................. CTATCAATGTGATTGCGTTGTCCTTACCGGCG 74536 29 100.0 32 ............................. ACCGCAGGCGAATTCTGGAACAGGCTGCGGAA 74597 29 100.0 32 ............................. CTTAAAAGAGATGTGCTCTCTAATGGGGTTAT 74658 29 100.0 32 ............................. GGTTCAGCGTAGCCCGACCGCTGTAAGCGGTC 74719 29 100.0 32 ............................. CTATTAGCGCGGCTGGCACCCGTGCCGCGCTC 74780 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 74841 29 100.0 32 ............................. ATCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 74902 29 100.0 32 ............................. TTTTCAGGTCTGCAGCGGAAGTCAGGGGAGAG 74963 29 100.0 32 ............................. ACCAAAGGGGTTTTTCCACGTATCGCCGCTGC 75024 29 100.0 32 ............................. CGATATGACTTTTCCTGTATATCTAATAAAGA 75085 29 100.0 32 ............................. CGCTCTCAATATACGACGCGCCTTTAATTGTT 75146 29 100.0 32 ............................. GAGTGAGCATGGCTAAGACACAAATGCAGTTA 75207 29 100.0 32 ............................. CGAAATGTCGCGGTCGCTGGCTTTAATCCAGC 75268 29 100.0 32 ............................. CGGCGCGAACGAGATGATCCAGCGCGAATCGC 75329 29 100.0 32 ............................. CCGGCAATCTCCGCGCCCTGATAGTCAGCGAA 75390 29 100.0 32 ............................. CCGGATGGACCTTCCTTTTCAGGTCCATATAA 75451 29 100.0 32 ............................. GGAATCGTCTTTTCAATGGGCGCGGGAAATGG 75512 29 100.0 32 ............................. CGAAGGGAAGCTAACGGCTGAAAAAGTCGTAA 75573 29 100.0 32 ............................. GTGAAATTGAGCCGCTTCAAGGGCTTCGCATC 75634 29 100.0 32 ............................. ACGTCGAGATATATCAGTCTAAAAGAAATGTG 75695 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 75756 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 75817 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 75878 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTTCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTACGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 84038-85348 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXTS01000009.1 Salmonella enterica subsp. enterica serovar Bovismorbificans strain BCW_3308 NODE_9_length_189616_cov_4.8052, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84038 29 100.0 32 ............................. TTTAAATAGTGGGGTGATCCCGGTGAAAATCC 84099 29 100.0 32 ............................. CGGGAAGCGCAGCAAAACGCCCGGTCGCAGCG 84160 29 100.0 32 ............................. GTGTCCGCCTGCCTTGATTCATGGATGGAAAA 84221 29 100.0 32 ............................. GTCGGGTGGAATGCCTGTCTGACATCAATTTT 84282 29 96.6 32 .............T............... TGCTAACTGGTTCAGGCCAGCAATAACGTTGG 84343 29 96.6 32 .............T............... CGCTGCCGGCTTAAATACGTGACGCATAGTAG 84404 29 100.0 32 ............................. GGCCGGTTTCCAGAGAATCAGAAGAGTATTTC 84465 29 96.6 32 ............................A TTAACGGAGGTCGCCCCATAAGGGGCGATAAC 84526 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 84587 29 100.0 32 ............................. TTATCAGTTGAACCCGATGACGACAGCAGCTA 84648 29 100.0 32 ............................. GCGGCTATGTCGTAACATTCCCGGACATCCCC 84709 29 100.0 32 ............................. GTCTTTTAACGTAGCCTCCAACTGACTGCTTG 84770 29 96.6 32 ............................A AACTGCTGAACAAACGCAGCCGTAATTCTGTC 84831 29 100.0 32 ............................. GCCCGTATATGGATTTAACTTTATCAGCGGCT 84892 29 100.0 32 ............................. TCACTCTTAAATTCCTGAATACGATAGGCTGT 84953 29 100.0 32 ............................. TATGGTCGCTGGGTGTGGTTCATCTTGCCTGT 85014 29 100.0 32 ............................. GTGTTCGTCATCTTAATTGTCAACGTCCCACC 85075 29 100.0 32 ............................. TCTTGGTTTTGGCGCGTCGTTTGTGCACAGTG 85136 29 100.0 32 ............................. ATGATGATGCGATGAGTTTCACCATTAACAGC 85197 29 100.0 32 ............................. GGAACATATCCGGGATTAACCGGAAACCTACG 85258 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 85319 29 100.0 0 ............................. | A [85346] ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATCAATGTCTTTTCTCGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCCCATAAAAAGTCGCTGGCTTCTCGATCGTAACCGAGATCGTAACGTAATAAATTTTGCGCAGCCACTGAACGTTGGCTAAGGACTTTGCCAAAGGCAACGTCAGAGATCGTCTGCAAGCCTGCTGGCGCAGCAATTTTCTGCTCGTATACGCCGTCAACGAGTGCTCTGGCATTATCCGGCATACGGATCTCACCATGTTGACGCAGCAGCGCCTGTGTACGCCACAGGCAGGCATGATCGGCGTAAACAAAGCCGGTACCTTTTAGCTCTTGCCCCAACCAGCCCTCTTCTGCCTGCTCCTGCCAGTGAGGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //