Array 1 165581-164692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHEE010000002.1 Phocaeicola vulgatus strain CL11T00C01 INE91_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 165580 33 100.0 32 ................................. CCTCCTCGCGTGAGTGGCTTCTCCTCCTCGCA 165515 33 100.0 32 ................................. ATTATTCCCAACTGTATTTTCTGGAACCAAGA 165450 33 97.0 33 ................................T GATGTAAAAAACCTCAAGAAAGCCGACATCTAT 165384 33 97.0 34 ................................T CCTTGTGGACTATGATTTCCCTTACCTGCGTAGC 165317 33 97.0 33 ................................T ATTTTACCTTTGACAAGAAGAAGGACTTCGGAA 165251 33 97.0 34 ................................C GTAGACTTTCTTGTCAAGCTCACAGAACTTGGCA 165184 33 100.0 32 ................................. TCTATCGGGGACTATTTTTTAGTACATATTCC 165119 33 97.0 33 ................................T TATCCCTTCCGGCAAATATATGACAGACAAACT 165053 33 97.0 33 ................................T CATTAACATCCACATCACGATGAGCGTACATCT 164987 33 97.0 33 ................................T CCACAGGATAGGGAACCCCTACCTCTTTCTCCT 164921 33 100.0 32 ................................. TGTACAAAGGGATAGTAGAAAATAGAAGTTAT 164856 33 100.0 31 ................................. TATTCTGAACACATTGCAAATGTACAAAAAG 164792 33 100.0 33 ................................. ATGACGAGGTGAATACGTGTATAGACAACCATA 164726 33 93.9 0 ....................A.........G.. | TA [164703] ========== ====== ====== ====== ================================= ================================== ================== 14 33 98.1 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGAATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAATCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGCGTTCCAGAGTAAATATATTATATTTTTTACTATACTATTCCTTGTTGTTTATTTGTTATATTGTTGATTATTAATGTGTTATTGTCTGTTTGTGTCGATTGTTTTTTCTTATCTTTATAAAATATATTAAAACATAAACTAACATGGAAATTGGTATAATTGACCTTTGTAAACAAATAGAAGATCCTAGTATGAACCGCAAGAAAGTCCATAAAATGGA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 739658-742625 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGHEE010000001.1 Phocaeicola vulgatus strain CL11T00C01 INE91_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 739658 47 97.9 30 ...A........................................... GGCAGCGGAAACAGCACCAATAACAATTTT 739735 47 100.0 30 ............................................... ATGCCTCCGGACAGATAGTTGACCTTGCCA 739812 47 100.0 30 ............................................... CGTCAATTGATCGATAAACGCAAGTAATTA 739889 47 100.0 30 ............................................... GAATGCTGCTCTTACGCCATATAAGATTGA 739966 47 100.0 30 ............................................... CATGAACGGCAGCTGACCTAAATAAGGCAG 740043 47 100.0 30 ............................................... TTCTCGTTTCATTAGGATCCTCAACTATAA 740120 47 100.0 30 ............................................... ACGGCAAGGATATTTTGTTCGCAACGGCTT 740197 47 100.0 29 ............................................... CGGATTGAAAGGGCAGAGAGATCGGAATT 740273 47 100.0 30 ............................................... TTGTATGCTTTCGCCGTCTCGTCCTCAGTG 740350 47 100.0 30 ............................................... TTTTTTTCTCCAAACTTTCGGACTTTAAAA 740427 47 100.0 30 ............................................... TCACCACCTTCAGATATATCTGCCATTCCC 740504 47 100.0 30 ............................................... AGGAAGGAGGTTTAAATTAACACTAGTCCC 740581 47 100.0 30 ............................................... TTCCTTTCCGTTATCTGCTTATTCATGTGC 740658 47 100.0 30 ............................................... CTGTCGTTCCGACATAGTTTGACAATGCCG 740735 47 100.0 30 ............................................... TATCGTAGGAAATTGGCAGGAAATCTTTCC 740812 47 100.0 30 ............................................... ACTATATCGAACATGAGGAAAGTTACACTA 740889 47 100.0 30 ............................................... ATTGATGCAGGTAGTGGACGTATGGTGATA 740966 47 100.0 30 ............................................... TGTATGGATCTACATTAAAATTGTCAGGAA 741043 47 100.0 30 ............................................... TGCTCGATTCTAAGGCTCAACAGATTTTGA 741120 47 100.0 30 ............................................... CTGTTACGTCTGTAGGATCTAATCATGTTT 741197 47 100.0 30 ............................................... TGCTCGATTCTAAGGCTCAACAGATTTTGA 741274 47 100.0 30 ............................................... CTGTTACGTCTGTAGGATCTAATCATGTTT 741351 47 100.0 30 ............................................... TAATAGAGCAATTAAAAGAGAAGGAGGGAA 741428 47 100.0 30 ............................................... TCAATGCAGCAGTGCTTGTTGCTTACACTC 741505 47 100.0 30 ............................................... TAATAGAGCAATTAAAAGAGAAGGAGGGAA 741582 47 100.0 30 ............................................... TCAATGCAGCAGTGCTTGTTGCTTACACTC 741659 47 100.0 30 ............................................... TCTTTTGCGCGAGCCTCCTCAACAATAGAC 741736 47 100.0 30 ............................................... CGTCTTGTCAACGGCTTGCGTCTTACTGAC 741813 47 100.0 29 ............................................... TTATAATTACTAGTAGTAATCTGAGGTTC 741889 47 100.0 29 ............................................... AATATGTTCATTGTCATAAGTAAGAGTTA 741965 47 100.0 30 ............................................... ACTATAATTGTGCGTAGTAATCTGAGGCTC 742042 47 100.0 30 ............................................... TTGGACCAGTCTAAGGAATATCAGGAACTT 742119 47 100.0 30 ............................................... CTTGTTGGTGCTGAACACCAGCAGCGAAAT 742196 47 100.0 30 ............................................... AGTATCTGGCACTGGGCAGCGGCTTTGTGG 742273 47 100.0 29 ............................................... TTGTTTAATAAGTGAGACAGTTGCTTGCC 742349 47 100.0 30 ............................................... TTTGGTTACTTTATGACCTGCATGAAACCC 742426 47 100.0 30 ............................................... GCCAGTATTAGAAGTACCGTTACATCTATC 742503 47 100.0 29 ............................................... TCGTTTCTTCTGATGTCTTACAGAAGATT 742579 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 39 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGGTTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTCTCAGCTAATAT # Right flank : CGGAATATATGTTACAAACTAATTACCAATTAGTTACACATATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //