Array 1 11071-13722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEN010000009.1 Phytoactinopolyspora limicola strain HAJB-30 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11071 29 96.6 32 ............................T TAGTTGAATTAGCTGCTGACTACTATCAAGAC 11132 29 100.0 32 ............................. CTCGCGAAGATCCTCGAAGACTCGAAGGTGTC 11193 29 96.6 32 ............................C AACCAAGGGGCAACGCGAAGCCTCTGGGCCTC 11254 29 96.6 32 ............................T TTTCTTCGGCATTTTATCGGGTGTGTTTTGGC 11315 29 96.6 32 ............................C CTCTCCCGCTCGACCCCAGAAACGAACACGCC 11376 29 96.6 32 ............................T GGATCGCTGGCCCGACGTCCAGGTGGACAGCC 11437 29 100.0 32 ............................. GTCACGGCGATGAACATCGTCCGCGCCACCCA 11498 29 100.0 32 ............................. ACCGCGCGGTGCTGCGCAACCTCTACAAGGTC 11559 29 100.0 32 ............................. GAGACGCGCCGTGACTGACATCCAACTCTTCA 11620 29 96.6 32 ............................C ACGTCACCACAATGAGCCCATGCTATCTGACA 11681 29 100.0 32 ............................. TGGGACCTGCCGTTCCGCGAGGCGGTCGCGAC 11742 29 96.6 32 ............................C GACACTGCACCGTCGACCAACGCCGCCATCTC 11803 29 96.6 32 ............................T GTGTTTGTGCCGAGTCCGTTTTGCGGCTTCAT 11864 29 100.0 32 ............................. CGGTGCAGCGAGTTCTTGTCGGCCGCCGTGGC 11925 29 100.0 33 ............................. GAGGGCCCGATGGCGGAGTGGATCACGGTCTAC 11987 29 96.6 32 ............................C GTACCCAATCCCCGTACAACAGGTCGGGGTCG 12048 29 96.6 32 ............................C CGGGCATTGTGCGCCACGCGCTTGCCGAAGCA 12109 29 100.0 32 ............................. CGGCGGCGAGTGAGACACGGAATTTGAACTGA 12170 29 96.6 32 ............................T TCGGCACACCGCCAGAAGCGTTGACTCCTACC 12231 29 96.6 32 ............................C TCGCGGCACAGCTTCACGGCGAAGTTGAGAAC 12292 29 100.0 32 ............................. TCGCCATGAATACAGAAGGGTTGTTTGAATAA 12353 29 100.0 32 ............................. CACATAGCCCGGTGGAACCCTGCCCGTGGTGC 12414 29 96.6 32 ............................T AGTCCCCTCCAGGGGGTTGTGGAGCCTGGCCA 12475 29 100.0 32 ............................. AATATGTCGAGCGGCTCGATCCGCTCGGAAGC 12536 29 96.6 32 ............................A CGCCGCCCATCACCAACGAGCAGGCCGAGGCT 12597 29 96.6 32 ............................T AGCCACTGAGATGGAGGCCAGCATTAACGCCC 12658 29 96.6 32 ............................A TCTGGACTCTGGCCGTCGCTGGGCACAGGTGA 12719 29 96.6 32 ............................C TCGGATTACAGTTTCTGATGACGAAGCCTCCG 12780 29 100.0 32 ............................. GTTAACAAGATCAACGCCATTCCATCTAATGA 12841 29 96.6 32 ............................C TTCTCGAACACGCCGGGGACGGTCTCGATGCC 12902 29 96.6 32 ............................T CAACCAACCGAAAGGGAGAGCACCATGACCAT 12963 29 96.6 32 .........A................... GTCCGCGATCGCGTGATCGTCATTACCGGATG 13024 29 100.0 32 ............................. ATCCGTGAGTGGACCTACGCCGCCATGGCGGC 13085 29 96.6 33 ............................C CACCACGCCCTGGTCATGCGGAACAACTCGAGC 13147 29 96.6 32 ............................C TCCTCCACCCACACGTCCCGGCCGAAAACGGG 13208 29 96.6 32 ............................C TCCTCCACCCACACGTCCCGGCCGAAAACGGG 13269 29 96.6 32 ............................T AACGATATCCGCTGCCGCATTTCCCCATGGCT 13330 29 100.0 32 ............................. ACACACCCCCGCACTGCCGCCACCGCTCGCGG 13391 29 96.6 32 ............................C AGCGTCCGGGCGGATCCGTCAGGCAGCTCCAC 13452 29 93.1 30 ..................C.........T GTAAGCCAGAGCTTACATATGGTGCTACTG 13511 29 96.6 32 ............................T GCAGGTGCGGGCCAGTTGAGTTCCCGGTCGAA 13572 29 96.6 32 ............................C CTAGGCCGCGTCTCCCTCTACCTCTATGCGGT 13633 29 100.0 32 ............................. GGCAACGACACTAACAAGTTGTGGCATTAACA 13694 29 82.8 0 ..T............A.......A.C..A | ========== ====== ====== ====== ============================= ================================= ================== 44 29 97.4 32 GTGCTCCCCGCGGACGCGGGGATGATCCG # Left flank : TGGAGACGCATCATGACGGTCGTCATCCTCACCGCAGTACCGCCGGGACTGCGTGGCCATCTGACACGGTGGCTACTTGAGATCAGCCCAGGAGTGTTCGTCGGGTACATCTCGGCCAGGGTGCGCGAACATATGTGGGAACGCGTCGTCGAATTCGTGTCCGGCGGACGAGCACTGATGGTGCATTCGGTCCGTGGCGAACAGCGGTTAGCTTTTGAAGTGCACGGACACGACTGGGAACCAATCGACTACGACGGCATCACCCTGATGCGGCGCAGCACCGTGCCCGACTACGTACCTGCGCCGACCGCTCCCATCCGGAAGACCGGGGCGGGTGCGCCGTCGGAGGACGTGGTGTGGCGGCGACGCAACGCGCGAAAGAAGTTCCGGAAGAAGGAGGAAAAGCGGGGCGATGGTGGGTGATGGCGATTCTCGTTAGCGTCTTTGGAGAAGTGAACAAGATTCGCGGATCACCGAGGTAACTGCACTGGTCAACAAGC # Right flank : ATATCGGCTGCCGTCATCTTGAACGGCGACGACTGTTACTTGCTCAGGCGAGTCGAGGCGGGTTCCGTCGGGCACGTGCTCGGGGTTCGATCGTCGGCTGTGAAGGACCATCCGCGCCGCCGACGGCCAACTGGTCGGTGGATCAGGGTGCTTGCTGGCTTGAAGTTGCGGATGTGGTGGGTTTGGGGGTGGTGGTGCGCAATTTGAGGCCAGGAAGTGGTGAGTGGGGTCGTTGTTCGGGTGGGTTCGCCGGTGGAGGTTGCGTGGGCCGTGCATGTTCGCGCCGTAGGCGGGTTCCGTTGGGTGTGGGCGGGGGTGTGGCGGGTCAGGTGCTTGCTGGCTTGAAGTTGCGGATGTGGTGGGTTTGGGGGTGGTGGTGCGCAATTTGAGGCCAGGAAGTGGTGGGTCGGGGCCGTTGTTCCGGTGGGTTGGCCCGTGGAGGCCGCCCGCGCCGCCGACGGCCAACTGCTAGGTGGATCAGGGTGCTTGCTGGCTTGAAG # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50193-47026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEN010000014.1 Phytoactinopolyspora limicola strain HAJB-30 Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 50192 36 91.7 35 .......CA...........C............... CCTGGCGCCAAGGCCAATCGCGCAAGCATGCGAGA 50121 36 94.4 39 ...A................C............... CCCGGCGTGCCGGCACGAGTGCGATACAAGATCAGACCC 50046 36 100.0 38 .................................... CGGTGAAACAGCGCCCACGTCTCGCGGTCCGCCAGCTC 49972 36 97.2 37 ......................G............. ATGTCTTGGTCCGTCGGATCCGCTCGTGGTCCTGGCA 49899 36 100.0 39 .................................... CCCGGCGTGCCGGCACGAGTGCGATACAAGATCAGACCC 49824 36 100.0 38 .................................... CCCGCCGTTGATACACCTGATCGCCCCAGGGAAGACGA 49750 36 100.0 36 .................................... CTCCTCGATGGCGAGCAGCGCCAGGGCTGACATATT 49678 36 100.0 37 .................................... AATCGACGCGTTCCTCACCCGCCGCGACGGCATCCCC 49605 36 100.0 35 .................................... TTCCGCGGCGTCCCGACCACGGAGTCGTACCTGAT 49534 36 100.0 37 .................................... TCGATCATCCGACGAGCACCCCCGTGTACGGCTGCAT 49461 36 100.0 37 .................................... CCGCCGAAGAGGCTGCGTTCGCCATCTCGCGGATGTC 49388 36 100.0 35 .................................... AAGGACGGCGGCTACCTGGTCGAGGACCGCTCCAT 49317 36 100.0 38 .................................... GCCAGCCACCACTGAGGCAAGGTGCCGGATCGACTTCG 49243 36 100.0 36 .................................... GGCACGACGCGGTCCGACCTGCTTCGCGCTGGCGCC 49171 36 100.0 38 .................................... ATCGGCGCTACCGCACAGGCAGCACACGCCAGCGGCGT 49097 36 100.0 38 .................................... CGACTCGTTTCTGGACCTTCTCTGCTACTCGGCTATTG 49023 36 100.0 35 .................................... CGCGCCGTTCTTTCTCACCGGGAGGTGACCGCCGT 48952 36 100.0 36 .................................... CGTACGACCATCGTTCCGGTGGATGGCGCTTGGCCC 48880 36 100.0 38 .................................... CACCCTGCCCTGCAAGCATCCCTGGAGGCTGCCGTGCC 48806 36 100.0 39 .................................... TCGAAGCCAAGGTGAGGCAGCCCGCATGAGCTGGGATCG 48731 36 100.0 38 .................................... CACCTCGCCTGCCGCAACTGCTGGTACCGACTCCCGAC 48657 36 100.0 39 .................................... CGTGTTAGCAAATGGACAATGGAACCGACCCTGTGAATG 48582 36 100.0 36 .................................... CGGCGGGCTCAATGACGGGTAGCGCATCGACGGGCG 48510 36 100.0 38 .................................... CACAAAACCGTCGATGACAACCGGTGCACCATCGATGT 48436 36 66.7 28 ................AC..G....GG.GCCCGCT. GCTGATGCTGCCACCTCTGGCCCATCGC A [48417] Deletion [48373] 48371 36 100.0 38 .................................... GCTTGGGCACCATGAGCAAACAATCCGCCGCCGAAGCT 48297 36 100.0 35 .................................... CGAGACACCGGGTTCAACCTTGAATCAGTCAGGAT 48226 36 100.0 38 .................................... CGGCCGCCTCGGGGACCCAGTCGTTCGGCGGGATCCCG 48152 36 100.0 37 .................................... GGCGGCCGGCGTGCACCCGGTCATCGCCGGCGGCTCC 48079 36 100.0 39 .................................... TCGACAAATCCAATTACGCAAAAACCTACCTACCCTTTG 48004 36 100.0 37 .................................... CGTGCAGCCGGTAGTGAGGTCCTACGCGTTCACGAGT 47931 36 100.0 40 .................................... CCAGGCGGTGCCGCATCGTGTCCACGCCGACACCGGCGTG 47855 36 100.0 38 .................................... TGGGGGTTGTAGCTCAGTGGCAGGGCTTCGGGAATCCA 47781 36 100.0 37 .................................... GCCACGACTATAGCCATGACCGCCGTGCCATACGCCC 47708 36 100.0 36 .................................... GGGCGACATCAAGGACCCTGAGCGGTGGATGGAACG 47636 36 100.0 36 .................................... TTTCCGGAAGCTGCTAAACGCTGTACTGTTCTTTCC 47564 36 100.0 35 .................................... TGATCTCTCCTACTGTCTCGTTTCTAGCCTGCCTA 47493 36 100.0 36 .................................... CTGCCGACGCGCCGAGCGTCATACCGTGCCGTTATT 47421 36 100.0 34 .................................... TCGAACGCCCAAAGGGAACGAGAAAGCTATTTAG 47351 36 100.0 35 .................................... TTCTCGGCCTCCTGACGCCAGACAGACACTTCCAG 47280 36 100.0 38 .................................... CGCCGTCGAGCGAAGTGGAGTCGGAGATCACCCCGAGC 47206 36 100.0 38 .................................... CATACCGGCAGACTTACGGACCGTCTCGGCCCAAGCTT 47132 36 100.0 35 .................................... CTAGCGCGCCTAGGATGGACTCAAATGGAGCTGTC 47061 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 44 36 98.9 37 GCCGCAATGGAGCCTGGTCGTAATGACCAGGAATGG # Left flank : CGACACGGCTGAGACCGGCCGCACCACCCGCACGGCCATGGCGGGGCTCGCCCCCGCCTGCCCATTTGGCATGCGGGTGGCCGCACCGGCATACCTGCTGACGGCCATCCCGAGATTCTGAGGAGACCGACGCTGGCCAAGTTAACAACGGCCGTGATGGTTCCTAGCCCGCAGCGACCAGGAATGGCGATCTCGGGCCGCCAATCGCGGGTCACAGCCGCATTGGGTGCCCGGTCGTAAAGAGACCCTTCGCAATTGGGGTGCAGTTGGGGTCTGACAATGTGATGTTCTTTTGGGGCATCGTGGCTCGGGCAGGTCGAGTGACATCGCGGGATACCGCACCTAATTGGCACTGTTCCTTGTGACGGTGGAGGGTTTTCGGTGTGACAGTGGAAGGTAGTACTCGCTATAGCAAGGAGACCCCTCCACCGTCGCGCCGAAAACCCTCCACCGATCGGCATCACGGCCGCAGCGAGGAATATCTCCCCATTCAGGGCCCT # Right flank : AGCTCCTGAGATTCTAGCCGTCTGACCTGGGCGAATGGAAGCCTGCGCGAGCGACGGGTTTGACCTCGCCTTCGAGGCTCGGGGTTGACCTCGGTTTCGGCGTGGACCTTGCTGTTGACCTGCGTGCGAGCACCTCCCAGGGAGGGAGTCGACGACCCACCGCTCGCACGGAAGTGTCACACGATTGTCGGGCCTGTCGATGGCAGGGTCCGGGGCCTGCCGAGGGTTCGCACCTCGGCTGCCGCTTCGACCGATCCTAGGTCTATTGTCACGACGGAATCCTCGCCGAGATGAACGACCTCCAGCACATCCCGGTTCCAGCGGGTGAATTCCATGCCGGACAGGTCGCATAGGAAGACCGAGTATTGCAGGCGCTGGCCATACGCTTCCATGACTTTGATGACCCGGCGTAGACGTTTCGGGTCGCTGATGTCGTAGGCGATGAGGTAGCGGCGGCGGCTCACGGTGTCACCTGGTGGTCATCGGCACGTAGTCGGGTA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCTGGTCGTAATGACCAGGAATGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 99161-106094 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOEN010000017.1 Phytoactinopolyspora limicola strain HAJB-30 Scaffold17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 99161 29 100.0 32 ............................. CAGCTCGGATGCACAGAGCCGGTCAGATCGAC 99222 29 100.0 32 ............................. AAACGTACACCCAGGCTGTGAACAGTTCAAGT 99283 29 96.6 32 ............................G CAAGGTTGATCGACACACACTCTCGGATGGCA 99344 29 96.6 32 ............................G TGTGGCAAGGGTGAGCGGTTCGCGTACCAGGT 99405 29 96.6 32 ............................T CATCTGGAAAGCCTTGTCACTCAGGCCCCCGA 99466 29 100.0 32 ............................. ACACCCGACCGGGGAGGCTCATCCACCTCCGG 99527 29 100.0 32 ............................. GTGGTTCGAGGCAAATCAGGACTTTAGGGATC 99588 29 100.0 32 ............................. GCTGGAGTGAATCCGCAGCGCATACGCAGGTT 99649 29 96.6 32 ............................G GCCACCCGGAAATGACCGCGAACCTCACTGTC 99710 29 96.6 32 ............................G GCCGAAGACGACGCCGCGAAATGGCGCCGGGC 99771 29 96.6 32 ............................T TTTCGGCCGAGGTCGACCAGGACTGGGGTCAG 99832 29 96.6 32 ............................A CCCCATGCCCAGCGGTTGACAACGCCCTCGCC 99893 29 100.0 32 ............................. GGCATCGTCACCAGGGCGGCGCGCCTGGCAAC 99954 29 100.0 32 ............................. ACCGACGACCACTGGGTCGACCGGGTCCAGTG 100015 29 96.6 32 ............................G ACATCCGCGCCATCCTCGCCGCATACAACGCC 100076 29 100.0 32 ............................. GCTCGGATCGACGAGGATCGCCTCGACCGCGC 100137 29 96.6 32 ............................G GTGCTAGCACCTTCGACACGCCCGGGGAGTTT 100198 29 100.0 32 ............................. GGGTCATCCGCGGCGGTCGCCGATCCCGAGCA 100259 29 96.6 32 ............................G GAGAAGAGATGATCGTCAACCTAACCCCCCAT 100320 29 96.6 32 ............................T TCATGGGGTCTCAGGTTCGCTGGGAGTCGGTA 100381 29 96.6 32 ............................T TCAACTACGACTGTTACTGCCAGTCATGTCGA 100442 29 100.0 32 ............................. GGGTCGCGTTGATCCTCGGCACGTCCACCAAA 100503 29 100.0 32 ............................. CATTGCCGGGATGCTCGCCGACGCTGGCCTGC 100564 29 96.6 32 ............................T CCCTCCGACGGCAGGGCGGTCAGCTTGAAGCC 100625 29 96.6 32 ............................G CTCGGGAGGGAGCACATCAAGCTCGGGGGAAC 100686 29 100.0 32 ............................. TGGGGCACGCTGGCATCAGAGGTCCGCAACGC 100747 29 100.0 32 ............................. ATGACGGCTCCTAGATGAGTCGGACGAGTTGC 100808 29 96.6 32 ............................G CCAGCGGGACCGCCATCCCAGATGGCGGCCAC 100869 29 96.6 32 ............................G GGGACCTTGGAGGCCTCGAGTTTCTTCGCGAT 100930 29 96.6 32 ............................G CCGCCCTTTTCCAGCGGGCCGCGGAACGGTAG 100991 29 93.1 32 ........T...................G ATCAGCTCGCCGTCGCGAACGAAGCTGACCCG 101052 29 100.0 32 ............................. GTAAGATTCACGATCAATCGTGTGATCTAGGT 101113 29 96.6 32 ............................G AGCCGCTTAACTTTGGCATGGCCACCAGCTCA 101174 29 100.0 32 ............................. TTTCTGGCCGGTACTCCCGCAGCTCGGTGTCG 101235 29 96.6 32 ............................G TTTCGCGCTTGCCTGACGAACGCTGAGTCAGC 101296 29 100.0 32 ............................. TTAAAGGCACGTCTGACGCTCAAGGTGAACTC 101357 29 96.6 32 ............................T AAGCTAATGCGAGAACGACTTCCTATCAAGGA 101418 29 96.6 33 ............................A GTGGCTGTGACCTGCTGGTATCCGCATCGCACC 101480 29 96.6 32 ............................G ACGTGCCGCGCCTTTCAAGCTGCAATCGAGGC 101541 29 96.6 32 ............................T TCGTTGTAGGCCAGGGCGGTGGTGATGTCGTG 101602 29 96.6 32 ............................G CTGACCAACGCGATCTGGTCGTGGCGCGGCAT 101663 29 100.0 32 ............................. CTGCCCACTAAAAGCAGAGCGCATGTTATTGC 101724 29 100.0 32 ............................. TTACGGTGCTTCGCGGGCATCCCGGTGTAGGC 101785 29 100.0 32 ............................. GTGTGCCGGTTGCCAGCCCCGGACGGTGCCGC 101846 29 100.0 32 ............................. CGCAACACCAGTGCCCGGTCCGAGTCGCGTTG 101907 29 100.0 32 ............................. CCCTTGGAGTGGACTATTTTTTGAGATGCCCA 101968 29 100.0 32 ............................. CGGCAGGGACAGTTGATCAGCGAGATGAAACG 102029 29 100.0 32 ............................. GGTAAACCGCTAGCTGCGATGGTGGCGAGCGC 102090 29 96.6 32 ............................G GCACGACGGCTTTCCGTCGTGCACGTAGACGC 102151 29 100.0 32 ............................. TCACCAGGATTCGCTGGAAGGATGTCGGGGAG 102212 29 96.6 32 ............................G CAAGTGAGAACTCCCGAATCTCAGGACCGCGT 102273 29 96.6 32 ............................T GCCACCGGCATAGCCAGCGGCATCACTTCTCC 102334 29 96.6 32 ............................T CGCAGACACTGCGCAGCAGATGGCTCTGGACT 102395 29 96.6 31 ............................G GATGGCGGCAAGGAAACCTTCACGGTCGCGG 102455 29 96.6 32 ............................G TCGCACCCGTCGCACTCCCGGTATGGGCCATG 102516 29 100.0 32 ............................. CAAACAAGAAGGAGTGTACCCGTGCCAGAACT 102577 29 96.6 32 ............................G GTCGCGATGCCCGCGACGCACCCAGTGGGGAT 102638 29 96.6 32 ............................A TCGCACCGAATCCGAGCCGATTGACGGTCCGG 102699 29 100.0 32 ............................. CGCGGCCGCCCGTCCGGGAGTAGTTCCCCCGC 102760 29 100.0 32 ............................. TCGCCGCCGGGATCCGGATCCTGCGGCTGGTC 102821 29 96.6 32 ............................G GCAACGTCAAGGGCTGGCTGCTCCCAGTCCGC 102882 29 96.6 43 ............................G CACGCGGGAACGTACCGGTGAGCTGCGCATCGAGGCCGATTTC 102954 29 96.6 32 ............................G TAGCAAAATCACTCATCGACTCCGCTAACACG 103015 29 96.6 32 ............................G GGCAACGACGGCACATCTCCGCTAGTGGCAGG 103076 29 96.6 32 ............................G GCACTGTAAGGTAGGTGGCGTATACCTTTCTG 103137 29 96.6 32 ............................G ACTGTGGGCATTGTTGATGAGAATTCCGGCGG 103198 29 96.6 32 ............................G CGTGACGAGTGCCTCGTGCATTGCATCGACCG 103259 29 96.6 32 ............................G GTCACCGGGCACCGCCACCCGGGCGGCGTTAC 103320 29 100.0 32 ............................. GAAGGCACCCCGCACTTCCGGGGCTCGTGGTT 103381 29 96.6 32 ............................T CCGCCCTTGCTCAGCCACTCGTCAAGCTTGGC 103442 29 96.6 32 ............................G TAGGTACCCGCGGAGGTCGCGAGCGACGGTGA 103503 29 96.6 32 ............................G GTAAGCCTCTGATCGAAACTCAGGCAGACAGT 103564 29 100.0 32 ............................. GCTCGATGAGATGCGTGAGGCACTCAAGGACA 103625 29 100.0 32 ............................. AGGACGAAATCGTCCGTGACGACGGGTCACTC 103686 29 100.0 32 ............................. GCTCGATGAGATGCGTGAGGCACTCAAGGACA 103747 29 100.0 32 ............................. AGGACGAAATCGTCCGTGACGACGGGTCACTC 103808 29 100.0 32 ............................. GCTCGATGAGATGCGTGAGGCACTCAAGGACA 103869 29 100.0 32 ............................. AGGACGAAATCGTCCGTGACGACGGGTCACTC 103930 29 100.0 32 ............................. GACACCGACCCCGCCAACCCCATGCCGCGGCC 103991 29 100.0 32 ............................. TCAGCGACGACCGTTACGCCATCGCTGTCGCT 104052 29 96.6 32 ............................A CCTCTCCAAACACCGACGACCTCCTCTCGATG 104113 29 100.0 32 ............................. CCGGCGACGTCCGCGGCCGCGGCGTGCTGGAG 104174 29 100.0 32 ............................. GGCACGGCGGCCTGGCGGCCGTCCGGGAGGAC 104235 29 96.6 32 ............................T CCAGCCTCATCGACCCCCTCGACAGCCACGAC 104296 29 100.0 31 ............................. CCCAAGCCACCACCTCAGAAACGCCGCCACA 104356 29 100.0 32 ............................. GCATACTCGGTCTGCCGAAGGTTCAAGATGGC 104417 29 100.0 32 ............................. CCGGACTCTGCTTCGAGAACCTGCTGATGAAG 104478 29 96.6 32 ............................G AATTTAGTTGGCTGGTCAACAGCCAAGGGGCG 104539 29 96.6 32 ............................T CTGGGTCTCGGCCCGCCCGTGACCCAGACCAC 104600 29 96.6 32 ............................T GAGCACGCTACGTCCATCGCGCTTCTCCCAGT 104661 29 96.6 32 ............................G TTTTCGAGCATGCCAAAAAAGAAGCTGCGGAC 104722 29 100.0 32 ............................. ACCGAACCTCAGATGGACCTGGAGAAGGTAGT 104783 29 100.0 31 ............................. GAGCAGCGCGCCGCCGCGTTGCGGTTCATCG 104843 29 100.0 32 ............................. ACAGGAAACCCGCCGAACCGACGACACCAACC 104904 29 100.0 32 ............................. CGCACGTGGATGGCCCTCGATCAGCCAGAAAC 104965 29 96.6 32 ............................T TCGGGGTCGAACAGGACGTGGATGGCGGGGCG 105026 29 100.0 32 ............................. CAAGCACGGACATGGTCGCGGTCCCACACCAT 105087 29 100.0 32 ............................. TCGCCGCGGCCGACGAGGTCCGGGCGGCGTGG 105148 29 96.6 32 ............................G GGCGATCGAGAGCGGTTCGTGCCGCTGCACCC 105209 29 96.6 32 ............................G TTCGCGCCGCGGCCGTCGCTGTAGTCCTCGGT 105270 29 100.0 33 ............................. AGCACCCGCAGGGTGTGGCTGGTGCTGTCGGGG 105332 29 100.0 32 ............................. AGTTCGTCGGAATCGTCGACGTAACGCCACTC 105393 29 100.0 32 ............................. ATGCCAGCAATTCAACGCTTTGTAGAGAACGG 105454 29 96.6 32 ............................G TATGAAGCTCATTCTTGAGAATTCTCGGTTTC 105515 29 100.0 32 ............................. GGCTCAGGTCCAGGCGCGGCAGTGGGTCTCAT 105576 29 96.6 32 ............................G GCGACTCGTTCCGGCTCGATGATCAGGGTCGG 105637 29 96.6 32 ............................G TAGGCAATGCCCACCAGCTCCACGTCCGGCGC 105698 29 96.6 33 ............................G GGGAGCGGCCATGTGTGACTACGAACGGCACCC 105760 29 96.6 33 ............................G GGGAGCGGCCATGTGTGACTACGAACGGCACCC 105822 29 96.6 32 ............................T CGTGACGGCGTCGAGCCTCCAGTTGTTCGCCT 105883 29 96.6 32 ............................G CAGGGTCGCACGCATCCACTCCGCACGGACCT 105944 29 96.6 32 ............................T GACGACGACGTACTGGCGGGCTCCCGAGGTCG 106005 29 96.6 32 ............................G TGCCGTCATCACGAGTGCGCTCATCGGTACGC 106066 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =========================================== ================== 114 29 98.1 32 GTGCTCCCCGCGTAGGCGGGGATGATCCC # Left flank : CCGGACTACCGGCACAACCGTCACAAGCTTCGGCTTCAGCGGTCTTCTGTTGGACCGTCGGATCGGGTGGTGCTGGTGGACGACTGGATAGAGACAGGCAGGCAGGCGGCGGCCACCCGAGCCATGGTCGAGGAGTGCGGAGCTGCCTGGCTGGGGTGCAGCGTCATTGTCGATCAACTGGATCGCGGAATGCACTCTGTGGTGGGTTACGTGCACGGGTTGCTCAAAGCGGACGAACTACCCGCAGATAGTGAACGAGCGTTCGACATCGACAACAGGAACTAGGGGCTTCGGCGGCATGCTCCTCAGCGACGGACATTGCCGCCGCTCCTGCTCCTTGGGTGCTCGTCCGAAGGGGCTAGCGGCAGCGAAACGGGTGCCCACGTCTGGTCCGAGCAGCTGATGTAGTGGAGAAGGTAATGGTGTTGAGTCTCGTTCGCGATTTCTCGAAAGTGAATGAGAATCGTGGCTTGACGTAACAACTATGCTGGTGAAGAAGT # Right flank : GGCGGACGTCAGTTGGGGTGGAACATGAAGGTGCGCTTCCCACGTAGGGCGGGGTCGGCGGCCACGAAAAACTGCCCGGAGACGGCCGAAGCTGCTCGCTGGCGGTCATGCGAACCGCCCGGTGACGGCTATGGGATCTGCCCGACGCGACGTCGTCGGCTTCGCCGCTCTCTGCGGCTGTCCCCCTTCCTGGGTGCGGCGGTGCTGAATCGCTGATCGTTCCTGAGAAAGGGGTGAGCTGGAGTCTGCCGAGGAGATCATGGAAATCTTGAAACGCCTAGTACCTGACCGGGTCGTTGCGTGATGCCGGCGAACTGGTCGGCTGCGACCCCGCCGAGGTAGAGGTGCCGGCAAGGTCGGATGACACCAAACGGCCACCCCGCCATCGCCAGCACCATCCTTCTGACCTTTCCTACATGGCGGTGATCGCGGTGCCCGCCGTCACTTCCTGGCGTCAAGGATGAAGTCCCGCTGGAGGTTCAGCAGCACATCGTCTGCGG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAGACGGGGATGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //