Array 1 128512-129248 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAJDYJ010000004.1 Corynebacterium diphtheriae isolate YEM0051, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence             	Insertion/Deletion
==========	======	======	======	====================================	============================	==================
    128512	    35	  77.8	    27	.GACAC.C..-...................A.....	TCCTACGGCTCATCTCCGCTGGCGCGG 	
    128574	    35	  94.4	    28	G................-..................	GCAACCCAAGTGAAGGGATCATGAGCAT	
    128637	    36	 100.0	    28	....................................	TGGGTGCATGTATCCCCACTGGGGGCGA	
    128701	    36	 100.0	    28	....................................	TGCAGCAATGGAACTAGCGCAGACGATA	
    128765	    36	 100.0	    28	....................................	CCATCGGTGGTCTTTTCTACTCATGGTC	
    128829	    36	 100.0	    28	....................................	TGGTCGGCTACTTCTGGGCCGTAGAGGC	
    128893	    36	 100.0	    28	....................................	GGTGTGGTTTCTACGCCTATGAGATTGG	
    128957	    36	 100.0	    28	....................................	TATGTGGCAGTTAACGCCGCCGACCTTG	
    129021	    36	 100.0	    28	....................................	CGAAGGTGTTATGGGCTACGGGTCTCGG	
    129085	    36	 100.0	    28	....................................	CCCGCCTCATCGAATGGCACGACAAGGC	
    129149	    36	 100.0	    28	....................................	GTGACCCGCAACCTCCTGGTGTTCCGGT	
    129213	    36	 100.0	     0	....................................	|                           	
==========	======	======	======	====================================	============================	==================
        12	    36	  97.7	    28	ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC	                            	       

# Left flank :   AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC
# Right flank :  CAGGTAGCCCAAAAAATCCTGTTTAACTTGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTATCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAA

# Questionable array : NO	 Score: 6.14
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-1.20,-3.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [10-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,1.05   Confidence: MEDIUM] 

# Array family : II-C [Matched known repeat from this family],   
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