Array 1 50678-51620 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMZO01000034.1 Photobacterium marinum strain AK15 contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 50678 35 100.0 34 ................................... CTAGCGCTTCATAAAGATCGCTTGATGGATAGAA 50747 35 100.0 36 ................................... GTTGCAACCAGCCATGAACTCCTCTTTTGACATTTT 50818 35 100.0 35 ................................... TATTTTGATAAACCGTAAAATCTCGTTTTTACTTT 50888 35 100.0 33 ................................... ATGTGTTCTGTATCTAAACTTTTTTCTCCATTA 50956 35 100.0 35 ................................... AATAACGCAAATATTTAACCTAAAAACAAATCAAC 51026 35 100.0 35 ................................... GTTTGAACAAAGGCTGGGTAACCAACATGCCAGCG 51096 35 100.0 36 ................................... AACTTATTGCAGTAACAACTCCCATATCTTGCATGA 51167 35 100.0 34 ................................... AATATTTGCATATAATAATCGCTCTGTTATGAAA 51236 35 100.0 36 ................................... TTAGCCTAATTTTATTTATTTCGTTGTACACATCAG 51307 35 100.0 33 ................................... TAAAGGCTAAACCCTGCATGTCCGTGAGGAGCT 51375 35 100.0 34 ................................... CATTTGCAATAAAGTTTACATTTCCGATATGTGC 51444 35 100.0 37 ................................... TTTGCATTTAGTGCATTTACTAAGATAGATGTATTTT 51516 35 100.0 34 ................................... TAATGCACTGTTTGTAGCACTATCCCTGGCTTTG 51585 35 80.0 0 .......................A..TT...CTGA | T [51611] ========== ====== ====== ====== =================================== ===================================== ================== 14 35 98.6 35 GTTGCAGCATCATTTGCCGTTAAGGCAGTAGAAAC # Left flank : CGAAGATGATAAGCTGCGCCGACAGGTAGGTGATGAACTACTTGGCTATGGTGAACGGGTACAGTACTCTGTATTCGAAATTAAACTCAGCAATTCAAGCACACTGAAAAAGCTAAAAGCAGAGCTGAAAGCACTGGCTGAACACTATGAAGGAAGTGTTGATATCCGGTTTTACTACCTGAATGAAATAACGCTGGAAAAAAGTACAACGCTGGATAACAAGCCAGTAGCCCGCTTTCCCAGCGCAATAATTCTTTAAGGAAGAACATAAAGGCCCAGGCTGAACCTAGTTCATACTTTCACCGACATAGCTTTTTTATGGGAAATCAAACGGTTACAATAAATCAATGCATGGAGATTCAGCCGTTCTTTAAAATCATAGACTTAATGCTTTTTTTGAGGGCTATATCCCATAAATCACCAGCATTGATTGTTAACCTCAAAGGGTTCAGCCAAATCGCCGCTACAGGCATTGAAATATAAGGGCTAAAAAAGATACA # Right flank : AAAGCTAAAAAACAATTAATTGCCAGATTTTAAGTTTGCTTTGAACAAAAAAAGGGACGATTACGTCCCCTTTTTGCATCTCATGTTTGTTATACCAAACTATTGATCCACATAATTCCAGCTTCTATCCGAAGCCACACCATATTAGTAGATAAAACAGACAGTAAAATACCTACCGCTATACCCGCCTTTGTAATAACTGGAAAAGGTTTTGAATTACTATATGCCCGTCCTATATACCAAGACGTAATAGCAAACACAAGACCAATAACCGTCCAGTGCCAATCACGACTAAAAAAGCTGATCGGCATTCCATCATATAGCATGGTCATCTCAAGAAAGTTTGTGCCAAAAACCCCGGTCAAAAAGATAAATGCAGTCCCAAATGTGGCAATAATCTGCATTTTCCTGTTATGTTCTTTCTGAGCTGCCAACTGCTGTTCTTGTTGTTCCTGCTGTTCTTGCTGATATTTTGCCGCCTTTTGCGCATTCAGCATGAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCATCATTTGCCGTTAAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 67028-65606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMZO01000015.1 Photobacterium marinum strain AK15 contig15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 67027 32 100.0 33 ................................ AAAGTTGATCATGACTCAGCCAGAGATCTAATT 66962 32 100.0 35 ................................ ATGAACTTTTGAGTACCGGGTCACACCATTCTGAG 66895 32 100.0 34 ................................ TCAAATTGTCGATGGAAACATTCACCCAGTCGAT 66829 32 100.0 34 ................................ CGAAAATGAAGTAGGCAGCTCACCATCAGATTTA 66763 32 100.0 34 ................................ AGCTGATGACGACCGAAAGGAACGTCACGAGCAT 66697 32 100.0 36 ................................ ACTGCTTACAATGGGCTTTAGTGGCGACAAAGCCTT 66629 32 100.0 34 ................................ TGAGATGTGATGTAATTGTTATCACGAAGCCATG 66563 32 100.0 35 ................................ TTCAATTACGATTAATTCGTTGCTCATAGGTTTAC 66496 32 100.0 33 ................................ ACACTACAGCTAACCTTTACCCGCTGAATTGTC 66431 32 100.0 35 ................................ TTGAGATGTTAATTGAGTGGAGTGAGAAATGAGTG 66364 32 100.0 33 ................................ TTGAAACTACAGCCAAGGCTACGGTTGCCCTAC 66299 32 100.0 34 ................................ TAGGTAACTGCCATCCTCAACGCCGGGTGCAGAA 66233 32 100.0 35 ................................ ATGGATTGTTACTGGCGATGATCAAACCTATTCAG 66166 32 100.0 35 ................................ ACATCAACATATACAGTAACAGCCTCAGGCCTGAA 66099 32 100.0 34 ................................ AACTTTACGCTTAAACTCTTTCGGTGCTTTGCCT 66033 32 100.0 34 ................................ ACTTTCGGTTCTGGCGGAATGCATGACTACATTT 65967 32 100.0 34 ................................ TCGTGATTACCGAATAAGAGCTGACTGCGCACGT 65901 32 100.0 34 ................................ ACTTATAACACCAACCTCAAATAGAATCTCTCTA 65835 32 100.0 35 ................................ CCGGTTGTCTTGCTTGGGGTTGCGTCGACAGTAAA 65768 32 100.0 34 ................................ CGGATCAAAACCGCAGTAATAATCTGGGTGATTA 65702 32 100.0 33 ................................ CGCACGGTAGCGGTTAATCAGGGCACTGGCTAT 65637 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 22 32 100.0 34 GTCGCTCCCTCCGCGGGAGCGTGGATTGAAAC # Left flank : GTACTTGCCAAAGTCATGAAGTAACCCAAGCAATTTTCCCGAATTGGGTAATCCAATTTTTTGTGCAAAACGAGCTGATAAATCACTTGTTTGCGATAAGTGTTCAAATACAGTTTGCTGACACGCATCATCTTCACGGCAATGGGCTATAAATGACATGACTGCTATTTTCTTCGATCAATAAAACTACAGTCTTAGCATTTGGCAGCTTGATAAAATGAATAAAGATCACAAACTCAACTTGTTTTATATTGCGCTACCACATATGCAATGCAACCCACATAATTATCCGCTTTATTGATAAATAACCTGAATACAAAGCGTGACGCTAACCTCTTGTTCTCATCAAAACCCCAGTAGGTTAGCGCGCAGATAGTCTATTGAAAGTTAAGCTCTTTAATAAATTGAGATATTAAACTGCCCCATATTAATGAGCAGGAGGCCGTGTTAGCGTTTTGTGCTTATTTGGCGTAGATTATTTAAGCCTTCTCCGGAAGGCT # Right flank : TCGTCTAACATATTGCCTCCATGCAATATCAATAGTTACATATCTATCGATTAAGACGCTTTCGAAACTTCATAGCGCTGAGTCTGAAACTTCTTACGCAGATATTTCATGGCTGGTCGCTCTAAGCCATAGTAACTAAGCGAAGAAATTAGGATAGTCACAGCCATAAATGCTGCCATTCCCCACATCCCTGCCGACCAACTGGTTTGAGTAAACCACGAAGCTAGCGCTTCTGGTGCAATCAGATTTAATACTTCAACACCAACTAGCAAGAGCACTGCATGCCACAAGTAAACTGAATAGGAAATATCCCCCAGAAAACGCGTCACCCGGTTATCCATCATTTTAAATACCGGAGTCTGACGTTCTGACTGCTGCGCTGCAATAAATACCATCAGAGAAAACACCAGTACCACATAGACGTTGTGGCTACCTTCTTTAGGCAAATGCATCAACCAAAGAGACATCAGGAATACACTTAATAAAGCAGCATCGTTATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 75626-77649 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMZO01000015.1 Photobacterium marinum strain AK15 contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 75626 32 100.0 34 ................................ CAATTAATGGTACTCCTAGTGCGATGGTATCACT 75692 32 100.0 34 ................................ TCGTCGTCTCTTGCGAACTGATTCCTGAATGGAG 75758 32 100.0 33 ................................ TTCTTTCATTGGTACTTGCTTTACAAGCATAAA 75823 32 100.0 35 ................................ CATTGCTATACTCTCTAAGCAAGACAACATCACCC 75890 32 100.0 34 ................................ AGCAGAATGATGACTTGAGCCAGGATGCAAGTGT 75956 32 100.0 36 ................................ ATATTGTAAACTCATCACTCAAAACTAAAACGATAT 76024 32 100.0 34 ................................ TTTCATGAACTTATGAATATCATGATGGCCTTTA 76090 32 100.0 35 ................................ TCTCTACTCAGTTTGTCACATTCCGCCTGACCGCC 76157 32 100.0 34 ................................ ACCGGAATGATTAAAATCAAAGGGTGGACAGTCA 76223 32 100.0 34 ................................ TTGCTAAGCAAAAAATCAACTGCGTGTTTAACTG 76289 32 100.0 35 ................................ TCTGGGGTGATAAGAAATGCATTCCAAAATACCCC 76356 32 100.0 34 ................................ TAACTAAAGTCCTGGGTAAGTCGTCAGACATGGA 76422 32 100.0 34 ................................ GTAATTACGAGAGATATACGAGATGGGCAAGAAG 76488 32 100.0 35 ................................ GATAATATCTCCTGCCGAATACAACTGCTTGATGG 76555 32 100.0 36 ................................ ATGGTAAGTTTGAAGCTTGGGAGCTTGAAATAAAAG 76623 32 100.0 34 ................................ TCGAATGCATCAATGATCTGCCACTTGTGACCCT 76689 32 100.0 34 ................................ TCGTTAAAGAGTACAGGGGGCAGTAATGCTTTTG 76755 32 100.0 34 ................................ CAGTAAGCGGTAGTGGTTACCGTAATGTAGTTGG 76821 32 100.0 35 ................................ ATCACAGCAAGGGCCTGAACTCTCTCTTTTGCCTC 76888 32 100.0 35 ................................ TTCGACCGCCGGATATTTTAACCGTCATACCATAA 76955 32 100.0 34 ................................ TTGGTGGTGACTATGATGTGATAAGCCTTTTCTC 77021 32 100.0 36 ................................ TAAAAAAGACCCGAGTGTTGGCGGTGTTACTTTTGA 77089 32 100.0 34 ................................ CGTCTACGGTTGGCTTGGACTTGTCCTTTCCGAG 77155 32 100.0 34 ................................ ACGCTACAGCGAACCTTTACCCTCTGAATAGTAG 77221 32 100.0 35 ................................ ACATTCATCCCATTCTTGCTCGGTAAGGTTCCCAT 77288 32 100.0 34 ................................ CAGAAAGGCAAGATTAAATATTCTGACGAAACAC 77354 32 100.0 35 ................................ ATGTTCGCGACCGCGGTCGCATTGAATAGTTTCTG 77421 32 100.0 34 ................................ GGTGTTATTGGGGATATGTGATTAAAGCGGTGTA 77487 32 100.0 33 ................................ CCAGTTGACCGGCGACGAAACTCACTGAGAATT 77552 32 100.0 34 ................................ CGTGATTCCAAGGTGTTGCCGTTGAAAAGCGGAA 77618 32 90.6 0 ................A......A...A.... | ========== ====== ====== ====== ================================ ==================================== ================== 31 32 99.7 34 GTCGCTCCCTCCACGGGAGCGTGGATTGAAAC # Left flank : ATATTATTCTCGATAAGTGAGCGTCTATTATGATGGTATTAGTTACTTATGATGTTTCTTTTGATGATGTTGATGGTAAGAGACGTCTGCGCAAGTTAGCTAAAGCTTGTTTGGATTATGGTGTTCGGGTGCAATATTCCGTGTTTGAATGCGATATTGCCCCCGACCAATGGGTGAAGTTTAAAGCTCTGTTATTGTCGATTTATGATCCAGATGTAGACAGTTTGCGCTTTTATAAACTGGGCAAAAACTGGCGCAATCGTGTTGAGCATCATGGTGCGAAAGTTGCCGTCGATATTTTTCAGGACGCACTTATTCTTTAGTGCGCTAATCCCTTGTTCTCATCAAAATCCTAGGAGGTTAGCGTGTTCTTAATTTATTGAAAAATAAGCTCTTTAATAAATTACCGAATACAAAATGAATGTCACGTTAAGTAAATTGCGGAGGTTAGCGATTTTTACTCATTTTGTGTACATTATTTAAGCCTTCTATGGAAGGCA # Right flank : CTCAAGATTTAAATCTTTAAAATTATTGGCAAATAAAATAACGGGAACGACATAAAAAAACACCCTGGCAAACCGAGAGAAAATAACCAGGGTGTTCGAGAAATTATGAGGTTTTTCTTTCAATCAGCAGCCATAGGCTGCTGATTTTTTTACGTGCTTGTTTTCGCACTGGTTATGTTGCCTTATAGCATGCTTGCTCCAATGGACAGAACTACGCAGTTCAGGGCAACGAAGAAGGCTACCAGTGGGGCAATGAACTTCAGCCAGGTCACATAAGGAATACGTGCAATAGCAAGGCCGCCCATCAATACACCGTAAGTCGGCGTCACAAATAAGATAGTACCGATACCACTCATAAAGGCAGTCACTACCAGGTCTCGACCTGTGTTTGCAAAGTCACTTAGTGGTGCCAGGATTGGCATACTCATTACGGCCAGGCCTGATGTTGAAGGGACGATGAAAGAAAGCAGCATCTCAATCCAGTAAACGGTGTTAATAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //