Array 1 6319-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUI010000021.1 Listeria seeligeri strain FSL L7-1068 NODE_21_length_44959_cov_34.319571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6318 36 100.0 30 .................................... GCTACTTATAAACATGCTTATACAGATGAT 6252 36 100.0 30 .................................... GTGCAGCATCTAGTAACTCCGTGATGGCAA 6186 36 100.0 30 .................................... TCTTTTGGATAATCCTCTAATTTGGCAATA 6120 36 100.0 30 .................................... TTCGCTTCCGGCACGGCCACATAAATGTAA 6054 36 100.0 30 .................................... TATGGAACCAACTATCGCCTATCGTTTCTA 5988 36 100.0 30 .................................... TAAGAAGGGGATTAGGTAAATACATATATT 5922 36 100.0 30 .................................... AGAAGATTACTTACAAAAAAGCATTCTTCC 5856 36 100.0 30 .................................... TGTCCTTGTTTAATCCCGGTTCTAACATGA 5790 36 100.0 30 .................................... TATGGAAGAGGAATTTATTCATGAGGAAAG 5724 36 100.0 30 .................................... CGTCGAATTTGTCATTATTCGGTCGTCGAA 5658 36 100.0 30 .................................... CTCTTCTTTCACTTTCTTCACTTGTCTGCA 5592 36 100.0 30 .................................... AGTGAACATGATGTAGAAGTGAACGTCTTG 5526 36 100.0 30 .................................... AATTTAGCAAACTTTTTGGCTTTGACCATT 5460 36 100.0 30 .................................... GTTCCCCTATCTGTTTTAGTGCCTTCTCTG 5394 36 100.0 30 .................................... TACAATGAATAATCATATTACCGACTTAAC 5328 36 97.2 0 .............................T...... | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAACTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGACTCGAATGCTCTTTGAAAATAAAATATATTTTAGTTAAACCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAAATATCCTTTACATCTATTTTTTTCTATATCTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAATAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTTGCTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAATGCCAAAAGCGCAGTAATGGCAAAACATGCGCATCCGATTATTCCTAAAATATGACCAATAATAGAAATCCCGGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTGCATAAAAGAAAGCACCGACTCCGCTTGTTTCTGATCCATCTCCGCCTGAGAAACTTTCACTGAAAGCCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 198521-199128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUI010000002.1 Listeria seeligeri strain FSL L7-1068 NODE_2_length_257163_cov_31.277829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 198521 29 100.0 37 ............................. AAAATGGACTTTAAAACAAATCCTGTTCGCATGTACA 198587 29 100.0 36 ............................. AGTGAAGGACATGCCCACATGGATGCAAAAAGGATG 198652 29 100.0 36 ............................. TGATACACAGCCTACTAATGCAGCTATTATCAAAAC 198717 29 100.0 34 ............................. TAATTTGTTCGGCTTTTTCAGCTCGTTGTTGTGC 198780 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 198843 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 198907 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 198971 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 199035 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 199100 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 99.7 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTTATTGCCTGCGCAACCCACTCGGTTATGGCCGGAAACGCAACCGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGACTCCATTGACCTACCAGAAGATAGACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 205363-206939 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUI010000002.1 Listeria seeligeri strain FSL L7-1068 NODE_2_length_257163_cov_31.277829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 205363 29 100.0 34 ............................. CCTTTTTATCATTTTTGACAAAGGAGTGATCTAA 205426 29 100.0 34 ............................. AAAAGCCTTCGGTATAGCTCGCTTTCAGATTTTC 205489 29 100.0 36 ............................. ACACAAGTCTTGTATTTTCGATTAACTCTTCTCCTT 205554 29 100.0 35 ............................. GAAATTGACAAATACCGTTTCACTAAACTAGCACA 205618 29 100.0 35 ............................. AATACTTGGGTAAACTGGGAATTCATTGCATCGGC 205682 29 100.0 34 ............................. TCTGGAAGCGTCGCTAAGGTGCTTTGTAGCAATG 205745 29 100.0 37 ............................. TTAATAAATCTTTCGCTGTAATGGTACCATCAGCCCC 205811 29 100.0 36 ............................. TCCTTTATGGCAATGTAGTTATTTACGTCTTTTTGA 205876 29 100.0 37 ............................. TTTAAATGAAAATCGTTTTAACAAAGTACGCACCTCG 205942 29 100.0 33 ............................. GATATCGCTTAACAAGTTGTTTTTAATATTTAT 206004 29 100.0 35 ............................. ACAGTAAAAGGAATTGCAGAAAAATTCGGAGGTTT 206068 29 100.0 36 ............................. AAGCATGCAGTACCAAAACAGACATTGCTTGACGAA 206133 29 100.0 35 ............................. ATATTTTTCGATGGGGAACCGATAGCGATGACAAC 206197 29 100.0 37 ............................. GAAGGGGGTAGCGCTGGGAGACAGTTGTTGTTACTGC 206263 29 100.0 35 ............................. TTTTACTGACCTCGATTCGCTTTTAATTTTTCACC 206327 29 100.0 37 ............................. ACAATTAAAGCATGTGGGGTCTTAGCAATATTCCAAC 206393 29 100.0 36 ............................. ACCGTAATTAATAAAGGCAATGCCGCAATTATGGCA 206458 29 100.0 35 ............................. ATCATTCTCATGTGTTTTAACAGGTTTTAGCTTTT 206522 29 100.0 36 ............................. TCGATTAGCGCAAATATAAGCTTCACACCTGCGTCA 206587 29 100.0 35 ............................. TCGTGATAAACCTTTATCACAAAACCGCCATCGCT 206651 29 100.0 35 ............................. CCCATTAAAATAGCAGAAAACAGCACCGCAAATGC 206715 29 100.0 36 ............................. AAAGTCTTTCGCAAAGTGTGCGTCCCCACGCGATCA 206780 29 100.0 38 ............................. CGAGCTATTGTATCATTTTTGAAGTAATCTAGCTATAA 206847 29 96.6 34 ........................C.... AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 206910 29 86.2 0 ........C....C..A...........G | T [206936] ========== ====== ====== ====== ============================= ====================================== ================== 25 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAAAATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTACGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGTGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGGGGTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAACCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACTAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAAAAAACACTAGTATTTTCAGTGTTTTTTTTTTCGCTAGCATTCACTCATTTTTTATGTTAAATTAAACACAAACAACTGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTAAGTTTATTCAAGACAGGAATTGAGAAATCTAGTCCAGAAAAATATGGAGATTTATTTGGTAGTAACAAGCGGAAAAATTACACTTTTTCGATATACCTGCCTAAGCCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 216743-218006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUI010000002.1 Listeria seeligeri strain FSL L7-1068 NODE_2_length_257163_cov_31.277829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 216743 29 100.0 35 ............................. AAAGGCAAATACCTAACCATTCCAACGCCGGAAGC 216807 29 100.0 36 ............................. ATTGTTGTTGGTATCGCAGGGATTATCGGTGTTTTC 216872 29 100.0 36 ............................. AACTTCGACAGTATCAAATAACGCAACCTGCTCAAG 216937 29 100.0 36 ............................. TAAATAGCTAACCAAGATACACGCAAATTGATGGCT 217002 29 100.0 34 ............................. TGGGAATATACTAAGCGGTTATGACCAACTGCTC 217065 29 100.0 36 ............................. CATTTTGTCCTGCTCTGATATCAGTTGATACGCATC 217130 29 100.0 34 ............................. TGTCTTTTGTAGTTAATCCTATTACTTCGCCACG 217193 29 100.0 37 ............................. ACAAGAATAAGGCTCTTGCCTATGCCATCGTAGGGAA 217259 29 100.0 37 ............................. ACCAAATAATGGTATATTGTCCTCGTCCGCTTTTTTA 217325 29 100.0 36 ............................. CCTTGTCCAGAGCATCTTCTAGCAAGTCGAAAGATT 217390 29 100.0 35 ............................. GGCGAAGTATACACCGTAATAGCGGCAGTTAGTGC 217454 29 100.0 36 ............................. TGATTTCAGTTATTTTCTGCATATCGTTATAGAACT 217519 29 100.0 37 ............................. ATTTGTCCATCTTCTTCTAATAATTCTCGAATAATTT 217585 29 100.0 36 ............................. GGTGCTACATGCATTGGTTCATTTAAAGCATTTAGT 217650 29 100.0 37 ............................. TTTTTTGTCGGTCGCGATGAACAAGGGTTCTTTTTTT 217716 29 100.0 37 ............................. TAGTTCCTAGTTCTCTTTTTTCATCTGTAGTCAAAAC 217782 29 96.6 36 .........................G... TTCGAAGTTCAAACAACAAAAACAGCAATGGCTTAT 217847 29 96.6 36 .......C..................... TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 217912 29 82.8 37 ..A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCTGGTGCGCCCC 217978 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 97.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGTGAGAAAATAAAATAGGTTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCAAAAAACCACACCCCCAACCTCCCATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGTTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAGCGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGGTTTAAAACAGTGGGGTACACAGATGTGACTTCGTATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //