Array 1 31181-27879 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCPD01000003.1 Ruegeria sediminis strain CAU 1488 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 31180 31 100.0 34 ............................... GCGATAGATCAAGTATGCAGCGCAAAGCGCGAAA 31115 31 100.0 34 ............................... AGGTAATCCCCGATCAGCAACTGCTGCGTTGCGG 31050 31 100.0 35 ............................... TACATGGTCGATCTGGCGGGCAACGTTGTGGTCAA 30984 31 100.0 34 ............................... ACGTCAAACCGGCTCAGGTCCATCAGGATTCCTC 30919 31 100.0 33 ............................... CGTGCTGTCCACCCGCGTCCAGTCGCTCCACGT 30855 31 100.0 34 ............................... CTCGCAGACGTAGAAGCGGAAATTCGGTGTGCCC 30790 31 100.0 34 ............................... TGCACCTTGTGCGCGGCCACCACGATCACCAGGT 30725 31 100.0 36 ............................... AATGGCCCCATGTGGGACGGTGACGCGATCCGGTAC 30658 31 100.0 35 ............................... ACGCGCTCTGAAATCGCCATGTTCTTCGGCGTACC 30592 31 100.0 33 ............................... GGCGTTTGGAACAAAACGGACCACAGGTTCATC 30528 31 100.0 35 ............................... AAATCCGTGTGCCCAACCATGCGCGCCAATTCCAG 30462 31 100.0 34 ............................... TGGTGTGCCGGCTGCGCGTTCCCGCAGGACTGGC 30397 31 100.0 33 ............................... TTCAAGAACATCGTTGATACGAAGTTTCTGAGC 30333 31 100.0 35 ............................... GTGTTCAACCAGTTCGACCTTGCCAGCGTCACATG 30267 31 100.0 34 ............................... CAAGGCCAAGAACGGCACGTGGGAGGACACCAGC 30202 31 100.0 33 ............................... TCCCTCTACCGCAAAGGCGTCGGCGCGCCCCCC 30138 31 100.0 34 ............................... GCAAGTGGGGCAGCAGGTACAAAAACCGTGGAAT 30073 31 100.0 33 ............................... CGCAACAACCTGATTGCCTATGACCAGCTAGGC 30009 31 100.0 34 ............................... TGGGCATGGGGGACCGCGTGATGGCTCTCCTCAT 29944 31 100.0 35 ............................... AGCACGGCAGGGCTTGAGCTGGTATCCAGCCACCA 29878 31 100.0 34 ............................... ACCACCAATGTCGGGCTGGTCGATACCGCCAAGG 29813 31 100.0 36 ............................... GAGTTCGATCACGATGACGTTGACGTGTCGGTGAAG 29746 31 100.0 34 ............................... CCCTTCGGATCCGCCGGCGCCAGCGCCTTCGGCC 29681 31 100.0 33 ............................... GCGTGAACAATGAGCGGATATTTCTGGATGAGT 29617 31 100.0 34 ............................... TGGTGTGCCGGCTGCGCGTTCCCGCAGGACTGGC 29552 31 100.0 34 ............................... ATGCACTCGACCGACGGCTCCTGGCAGGGCGCAC 29487 31 100.0 33 ............................... GTGCCCTTCCTGGCGTTTGAACGCTTTGAAGGC 29423 31 100.0 33 ............................... GACGGGGTGGATGACTACCTCGTGACCACGGCC 29359 31 96.8 34 ..........................T.... TCCCGTATCAGGTCAAGGGTTCGGCGGTATTCGC 29294 31 100.0 33 ............................... AGGATCGGCAGCATGTCGGTATCCCCGATCAGG 29230 31 100.0 33 ............................... CATCCGCCCGCGCTGGTAATCCACCGGGCGGCG 29166 30 96.8 45 .............-................. TACAACCGCCTTGCGGGCATGGCCGGGGTCGGGCAGACCGCCACG 29091 31 100.0 35 ............................... CACCATTGGGCTGCGGCCAACGTGGAGTCGCACTC 29025 31 100.0 34 ............................... ACGCAGGACGCCATGCCAGCGGTCAACTTCTCGC 28960 31 100.0 35 ............................... CGGGGCTATGCGCCGCGCCGGAATGGTTGGATCAG 28894 31 100.0 35 ............................... ACCACGTCCGCAGTCGTCGCCCGCCACGTGCCCAG 28828 31 100.0 34 ............................... ATCAAGCGCGCGGACCAATACGTGAGGCAGGGCC 28763 31 100.0 33 ............................... CCGTCAAAGGCGGAAGTTGCCGCCCGTCGCAAG 28699 31 100.0 35 ............................... GGCATGATGGCTCTGTTGCTTTCTTCGGTCTCGGC 28633 31 100.0 35 ............................... GGGATGAAACCGGGTCCGACATCTTGCCCACGGCC 28567 31 100.0 33 ............................... GAGTTCGACGGAGGCGTTGAAGCCCTGCGCCTG 28503 31 100.0 34 ............................... GTCAGCCTGCGCCATCATTTCCAGCGCCACCGCG 28438 31 100.0 35 ............................... GCTGGTTGTGTGGCGAGGCCGCGCAATGTGTGGCT 28372 31 100.0 35 ............................... CACGGCAGACGCATCCAACTGGAGGCCCACGGAAT 28306 31 100.0 34 ............................... ACCTCGAAGTTGGTGGACTAGAGTCGGGCCAAAC 28241 31 96.8 34 ..............................T TCGGCATGGACGCCATCTGGCGCGTTGAGGAGGC 28176 31 100.0 36 ............................... TATGTCGCCTGCATCGACATGTGCCGCCAGGTGGCG 28109 31 100.0 37 ............................... GCGTGGGGCAACCATCACAAGACCCCCCCCCTGCCCG 28041 31 100.0 35 ............................... ATCACGCTCGATGGCGACCGGAACCGCCGGGGAAC 27975 31 96.8 35 ......................T........ GCCTGCAAATACTGCGACGCTGCGATTGCCCTGCT 27909 31 93.5 0 ...............C....C.......... | ========== ====== ====== ====== =============================== ============================================= ================== 51 31 99.6 34 GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Left flank : GCTACCCTGCCTTTATCTGGAAGTGACCCGCGATGTTGGTGCTGATCACCTATGACGTGAAGACTGAAACCTCGCAGGGGCGGAAGCGTCTGCGCCGCATAGCCCGCGCCTGTCAGGACTTCGGGCAGCGTGTTCAGTATTCGGTCTTCGAATGCGAAGTAAACCCGGCACAATGGACCGCCTTGCGCGCCCGGCTGCTGTCTGAGTATGAAGAGTCCGAGGACAGCCTGCGTTTCTACTTTCTGGGCACGAATTGGAAGCGCCGCATCGAGCATTGCGGCGCCCGCCCCGCCACCGATTTCGACGATGTCTTGATCGTCTAGCGCGAACCCAAAGCGCCCAGCAAGTTCCCCGGAGGTTCGCGCGCAGCACAACTCCTTGATATCGTGGGCAAACATCGACACAGCGAAGAAGTTCTCCAGTCGAAGGCAGCTGCGCCCACTCACATTCGCACCAAACAGGGTATTCTCCTCCGGAACTCAATACCTTAGCTTAACACA # Right flank : AGGCGCTTGTCTCCGGAAGCTGCGCGCACGAACGAATATTCCTGCGTAGCGAGCATCAGAAGTCGCCTTTGTTCCATACCAAGCGCATCCGCCAGTTCCGGGAACGCCGCGCATTTGTTTGCCTCTACAAGGATCCACACAGATTTTGGGTTTCTGCGGCGGGACATCCCATTATTCGGACTGTCCTTTTCTAGGACTTCGTACAATCGTTCGCGAAGAACAGCGCCAAAGTGATGTGATCAGTGCACCTGCGCCGATTTAAGATAGTATTAAGTATCAAAGTTGATACCATAATTATTGTTGAGATTCCACAAACTCAGTACTACCTCCAATGCCAGGTACTGAAAGGGTCGCTATATGAAGAACGCATCCAATGACATCAACCAATTGTTCCACGAAAGGTGGCTCGATTTCACCTATAGCTTTGGAAATGACGGGTTCTTCGAGAACGGAGTGGAACGCTCGATGAGAGCAATCGCAGAAATTTGTGCGATCTTCTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCACACGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //