Array 1 77429-78311 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAS01000003.1 Apilactobacillus timberlakei strain HV_09 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 77429 29 100.0 32 ............................. TTCCGTGGGGTCAATATGCACCTGCAAACTCA 77490 29 96.6 32 C............................ TAATTTGTTCATCACTTAATAATTTACCGATA 77551 29 100.0 32 ............................. CTAGAAAATGTGGAGACTTTCTTTTGTACTTC 77612 29 96.6 32 ..................A.......... TTAATTCATTATTCATGTGTATTGCCTCCTAC 77673 29 100.0 32 ............................. TTAGCTGCAATACTATTTATATTAGGATTTAT 77734 29 100.0 32 ............................. CCTAAATCAATCATCAAATTTTTAGAAAAAAT 77795 29 100.0 32 ............................. CAAGGCAACCTAGTTGATGCAATTAAGAGTGA 77856 29 100.0 32 ............................. TGATGTTTATAGTAGGCTTGTACTCAACTTTA 77917 29 100.0 32 ............................. CCTTATTATCCGAAGTCGTTAACTTAAACCTT 77978 29 100.0 32 ............................. TTGCACTAGCAGAAGCAATCCCAATACTTATA 78039 29 100.0 32 ............................. TGATTATTTGAATTTGATTGTTTGCTAGCATC 78100 29 100.0 32 ............................. CTTAAGTCTTTTCCTAAGCTTCCAACTGTATT 78161 29 100.0 32 ............................. CATATCGTACAGACGATGATCAATATACTTTA 78222 29 100.0 32 ............................. AAAAATGAAACTATTACTAAAACTTATCGAGA 78283 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 AGAATCACTCCCGCGTATGCGGGATAAAC # Left flank : CTAACTTAATTAAAAGTTTGGACCGGAATACCCTGAATAGAGCTATCCGTGAACGCATAATAGCGTGATAACTATTTTGGTCTATATTACTGGAACAGCTTAAATAAAAGAAAAATAAATAATAAAAAAGATAAAAATCTAAAAAGCTATAATGATCATAATAAGATAAAAGACTTGCTGATAAAGCAAGTCTTTTTATTTATCTTTCTTTTTGTTGGAATAATGAATACCTACGCAGCAACCAATAAAGATAACGATAAGTAATGTATATTGACCAACCGTATCCCAATCGACATCATCACCACCCAATAGGTTAAATAAGGCAATACAACATAAAATAAACAAGATAAATTTCCACATTCTAAATATTAAACCAATGCTATTGCCAAATAGTGATAGTAATTTTAAAAAGTCCATATGTATCCTCCGAGATTAATCTACTAATAATTATATTAGAATCAGCTTTTATTGGCAAAGTAAATATAATTATTTTTATGTAT # Right flank : CACTAAAAGAATGCTGAAATATCAAGCTTTTCTTTTTAACTTTCTACTAAATCCATTCACTTTCATTGCCAGTTTACACATTAATTTAGAATCCAATAAAGCTCGATGTGGAACCGTAGTATCAATTCCATAATCAAGCAAAGCAGTTTCTAATTTATAATTAGGTAAAAACATTTTTTCTTTTTTCACTAATGGTAAAAGATCAATATAATTATTCGTCAATGGTTTCAAATTATGTTTTTCTAAATTGTAATTCAAAAATTCAATGTCGAAATTAATATTATAACCAATTAAAATTTTATTTGAAATAAAAGATTGAAATTTTTCTAGTGCTGATGATAAATCTATTCCTTTATTTTCTAACATATCATTATCTATATTAGTAAGATTTATAATTTCTTCAGGCAAATTATATTTACTATTTATCAAATAATTAAATGATTTTTTATCACCATTAGACAAACTTAAAGCCCCAATTTCAATTATATGATTAGTTCTAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGTATGCGGGATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 88753-89149 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUAS01000003.1 Apilactobacillus timberlakei strain HV_09 scaffold_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88753 29 96.6 32 ...G......................... CCAGCAATATAGAGGGATGTTTTTTGCTAATA 88814 29 100.0 32 ............................. TTAAAGTTTTTAAGGGGAATAGTATTTAACTC 88875 29 96.6 32 G............................ ATAAAATACGTTCCAACTTTTATAGATAATAA 88936 29 100.0 32 ............................. TCGTTTTCTACAATACCTTGGGCAGTAGAATC 88997 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89059 29 100.0 33 ............................. TTCGGTAATCGCATTGAGCGGTTGCCCCCTTTA 89121 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 AGAATCACTCCCGCGCATGCGGGATATAC # Left flank : AACAGACTCATATCCTCCATTTGTAGAAATTACGCCATACCAACCATTTTTTAGATGTTTATATTTATATTTTATAGTTAAACCCTTGCCATTATTCTGATTAAAATATGCATAGTTTTTTCTGATTCTATAAACAAAATTTTTACTAAAACCTTTTTTACCATACCAATTGTGTCTATATCTTAATGGAACAGAAATGACTTTAGACTTTGCATTAACATTATTAATGATAAATGATGAACCAAGTGTTAAAACAGAACAAATTGTTATGATAATTTCTAAAGCTATTTTTTTCATTAAATATCACCTTTCTAATTTTATTAATATAATTATACACTCTAGAATCATTAAAAAGATAAATAATAGTTAAATCCATAAAAAGGAGAACTTTATCTTGTTTTTTTATCTAGTTAATAATTATTATTTTTTATTAATATAAAAGCTAAACTAGTAAAGAAGATTTTGAGAATAAAGTTGTATAAATAATTATAAAAATATTT # Right flank : CACTAAAAGATTAGCGGCAAATCAACAATCCAGAATTGCAGATCAAGTATTTTCATTCACTTTTATTATGATAGCATATCCACAAATTAATTAATATAAAGTTATAAATGTATAAAAATTAATTTTGCATATATAATTAATTTTCTTATTTACACCCCACTCAAAAACCGCTATACTTATAAACATACAAAAATAAAACATAGAAAAAGAGCGTTGATCAATAATTACGACCAATAATTATTGACCAGCTAACAAAGTAATCGCACTTACTTGTTAACCTTTAACGCTCCTTAGTTATTATATAAGAGCTGAGGAGTAGTTGCAATATATCTAATACATATATGAGGGGACAAGTTTATTACTTGTGCCCTCTTTTTCTATCCCAAAGGATGGATAATAATGAACCAATTTATTAAATTTGATGTTGAACTACGTAAAGATGACCGTTTAAATAATGATACGCGCTTAGCTTATGCTTACTTATACGATCGGATGCATTC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACTCCCGCGCATGCGGGATATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //