Array 1 5525-4177 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBR01000044.1 Pectobacterium versatile strain A75-S21-O15 Pectobacterium_sp._A75-S21-O15_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5524 28 100.0 32 ............................ TTATGTACTCAATCATAATTACCTCGGCGGCG 5464 28 100.0 32 ............................ TGAGGGCGTGACAGCCAATGGAAAAACAACAC 5404 28 100.0 32 ............................ ATCAGGGAGGTGGAGATATGAAAATGCAAAAC 5344 28 100.0 32 ............................ TCTGAAACTGGATCGTATCAAAAAGGGGCAGT 5284 28 100.0 32 ............................ AGTCCGGCCAGTGCTGCCGCACCACCTCCCAG 5224 28 100.0 32 ............................ GTGATACGTTTCATTTCTAACTCGTCATGCCA 5164 28 100.0 32 ............................ GAACGGATCATCCATCAGAATGTTTGCCAGAA 5104 28 100.0 32 ............................ CTAGTGTTCAGGGCGCAGGCACTCCGAACGAT 5044 28 100.0 32 ............................ AGATAAAGTCTTTGAGGTTTCAACGCCGCAAG 4984 28 100.0 32 ............................ TGATCCGCAGCGCAAGCGCTGACATAACGCAT 4924 28 100.0 32 ............................ TAAGATACTTCTCCACATATTCATCCAGTTCT 4864 28 100.0 32 ............................ GACAGGTGGTTTTTTTACGCCTAAATTCAGGA 4804 28 100.0 33 ............................ AGGCTGCAAAATGATGGTGCAGACTTCCAGCGG 4743 28 100.0 32 ............................ TTAGGCTTTGGCCCCGGCTTCTTGCGTTGAAC 4683 28 100.0 32 ............................ ATTATCGGCAACCCAACTATTCGTCAGGGTGC 4623 28 100.0 32 ............................ GGCATAAACGGCGGGGTGTAGACGGTACGCCC 4563 28 100.0 32 ............................ TGTCCAGTTTCCAGCGCTGCAACACGCACTTC 4503 28 100.0 32 ............................ GCCTGACCCCTAGCGCGATATCAGGAAGTATC 4443 28 100.0 32 ............................ CACACACCAGCATGTGTCAGCGCATCAAGTGG 4383 28 96.4 32 ...........T................ ATGACTGATAATGCGCTGGCTGGGGTATGGGG 4323 28 92.9 32 .G.........T................ CCCGATGCACAGATGTCTGCTGAGACACAGGA 4263 28 85.7 32 T.........T..CG............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 4203 27 71.4 0 ...........TGC......-..C.GGG | ========== ====== ====== ====== ============================ ================================= ================== 23 28 97.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACATTAGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCACCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : CTTATCAGGATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGACTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCCCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6352-6213 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBR01000070.1 Pectobacterium versatile strain A75-S21-O15 Pectobacterium_sp._A75-S21-O15_contig_70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6351 19 64.3 32 ---------....T.............. ACATCAGATCAACCGGCTCGATACCACGCCAT 6300 28 92.9 32 ...C.......C................ AGTCCGATCTTCATCACAGCTGACGCCTCTTG 6240 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 85.7 32 GTTTACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGTATAGGCAGCTTAGAAAAATTGCTATTAGCTGGCGGATTGCTGGCATCAGGTTCACTGCCGCACAGGCAGTTTATCCACGGCCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCT # Questionable array : NO Score: 4.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.29, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 53-983 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBR01000079.1 Pectobacterium versatile strain A75-S21-O15 Pectobacterium_sp._A75-S21-O15_contig_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 ............................ CTCCTGGAAACAAGTGATAACAACCTACCATTT 114 28 100.0 32 ............................ GGCGCAGGGATGGGGTACTTCCTTTTGTCAGA 174 28 100.0 32 ............................ TGAGTCAGCGATTGCTCCCTTAAGCTGTACCG 234 28 100.0 32 ............................ TTCGTCGCTCGGTAGCTCACGCGGAGTGCCGC 294 28 100.0 32 ............................ GTTGAGCAGGCCGCCGATGGCAAATGGGAAGT 354 28 100.0 32 ............................ TCGACCCCGAAGACGTACCTATCAGTGCCAAT 414 28 100.0 33 ............................ CCGATGTGGCGCTTATGCTCGGGCCAGCTCTAC 475 28 100.0 32 ............................ TCTGGCTTGAGTGTGGCGCCAGGGAGCGATGC 535 28 100.0 32 ............................ AAAGAGAGATGATCTAAAGGGATCGATCCTTA 595 28 100.0 33 ............................ GTCTTCGATGGCCTTCTGAATCATCTGATCGAC 656 28 100.0 32 ............................ TTGTCTGTAAGCGTTCGATATCCCTGCACTGT 716 28 100.0 32 ............................ GAACAGGTTGGCACCGCACAGGTTGGCACCGC 776 28 100.0 32 ............................ GTCAATTGAAAGTGTGGGCGATGACTGGACGC 836 28 100.0 32 ............................ AACCTGCGCGGTGCCAACCTGCCTGATCGCAC 896 28 100.0 32 ............................ GACATGCAAGCACGCCAGCGTGATGTCGCTGC 956 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCGTATAGGCAGCTTAGAAAACCAATACCCGTCGCAAGTTTGCTGTATTTCTG # Right flank : GCACAGGTTGGCACCGCGCAGGTTGGCACCGAGTTCACTGCCGTATAGGCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 148879-148119 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBR01000004.1 Pectobacterium versatile strain A75-S21-O15 Pectobacterium_sp._A75-S21-O15_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 148878 29 100.0 32 ............................. CGCTATGGATTCGTCGGGTATGAACCAGAAGC 148817 29 100.0 33 ............................. GGAGCTTATGAAACTCGATGTTTCAAACCCGCA 148755 29 100.0 32 ............................. CCAGGAAGAGTAAGAAAAATAATTGAATGTAA 148694 29 96.6 32 A............................ GGTTCCTGCATAAAACACTGTAGCTGATCGTT 148633 29 100.0 32 ............................. CCGGAAAAATCGGGGCCGGGATAACCAGCGCG 148572 29 96.6 32 ............................C GGCTATCTCAACGCGTCGTTAGTCGTGCTGAG 148511 29 100.0 32 ............................. CAAGAGCCGGATTTATACCTATGTCCGGTAAC 148450 29 96.6 30 .....................G....... TCCTCTCGCAGATGCATACCATCATGGCAT 148391 29 82.8 32 .A......T....C.........GG.... AATAATGATGTTTTCGGAGGGGGTTCGGGGAC 148330 29 96.6 32 ..A.......................... TGAGGACCGTAATCCGTCACCAAATCACTATA 148269 29 96.6 32 ............T................ GATACAGGGCAAATCGAACAGGACTGTGACGT 148208 29 89.7 32 .......T..T..C............... TGCATGGGGCTGGTAAAGGATTGGGAATTGGC 148147 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 96.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAGTATTTTTAACGGGGAAGATTTTTACCGAGAAATAGAAATAAAAACGCAGTGGTATAACTCTTGCCGCAGTGTGCAGCGTTTAATTCAGCAACTGAACGTTTTCCAGATGTATGAAATCAAACCGGCAGATCAGGGAAACGTGGTGATAGCGTGGGTGAAAAACACGGAATCTGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTTAAAATCAATAAGTTAGCGATCTTTAACAACATAGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAATGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTGTTGCATGTTGGTCTAAATATCCCCTGCACGGGAGCAAATCCCGCTTCTGGCTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCATTTTTTGTGCTCACCGTCATGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGTTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAGGGGGGAAGCATTCCACCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 151851-151090 **** Predicted by CRISPRDetect 2.4 *** >NZ_RMBR01000004.1 Pectobacterium versatile strain A75-S21-O15 Pectobacterium_sp._A75-S21-O15_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151850 29 100.0 32 ............................. ATAGCTAATCTGCCGTAGACCCAACTTCTAGT 151789 29 100.0 32 ............................. AGCGGGTGTTGCTATTTCTTGCCGCTAGGGAA 151728 29 100.0 32 ............................. CGTTGTAGGTGGTGTTAAATGCCATAAGAAAT 151667 29 100.0 32 ............................. CTCACGGATGATTAACGTGTATGATTTTCTGC 151606 29 100.0 32 ............................. TAACCAGAGTCATTAGGCCGCTGCCTAGGCTC 151545 29 93.1 32 .....T.............A......... GAATTACGCGCTCAGGGGACTACGCCAGACGC 151484 29 96.6 32 .A........................... TAATGACCGGGTTTCGGATTGCCGGGGGTGTC 151423 29 96.6 32 ............T................ AACCTGTCATAGCACGCAAGGCGCTTTGTCCC 151362 29 96.6 32 ..........T.................. ATGCGTATTGCTGTGGCAAACGGTATTACGCT 151301 29 89.7 32 ............TG..T............ GACACCGGGCAAATAGAGCAGAACTGTGATGT 151240 29 89.7 32 A.......T.......A............ AAGTCGTTACGATTGCCGCCCCATGTTCCCGT 151179 29 100.0 32 ............................. TTTTCAGTCAAAGCGCGTGATGTATATATCGA 151118 29 93.1 0 .............T.............T. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 96.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : ATGTGAAATGTAAATTACACATGTTTCCATATTGTCAACTCGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGATGCAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //