Array 1 6228-5995 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000008.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont7.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================== ================== 6227 23 100.0 29 ....................... CACAAGTACCCGCAATCCGTACCGTTTCT 6175 23 95.7 30 .....................A. TACGGATTTCAGGCCAAATGTACCGCTTTC 6122 23 100.0 30 ....................... CACAAACGAGCCAAAATCCGTAGCGCCAAC 6069 23 95.7 29 ...................G... TACGAATAGGGACCATCCGTACCGGATTT 6017 23 95.7 0 ...................G... | ========== ====== ====== ====== ======================= ============================== ================== 5 23 97.4 30 GTACCACCGTGGTACAAACACGA # Left flank : CTCCATCACATCCCCGCGAACCTCGTTTTCCCTAGAAAACAAGCCAAAACCGCCATGTGAAGAAAATGAAAGCGTTTGCCGCAACGAGCGCAACACACCCCCAACCTGTGCACCACCATCACGCTGATTGCCTCCCAATAGCCAACGATTCCTTCTCATTCCTATGCGCCCCCACTCCTGCCTCTTCCCAATCGACCTCTTTCCCGTACCAGACTCTTCCCTACCTCGGCACTGTCCGATCCTTGCCCTTCCCGACCCGCCCTTTCCTCCGCGTTTATCTGTTTCTGCCGATTCCTTGTCCATTTTTATTTCTGACCATTTCCCCTCACCCCTTCTCATTCCTGACCTACCCCTATCTACCCCGGCCTCACCACTTCTCGTTTCCAACCAATCCCATCTCATTCCATCTACTCATACGGGCGAAGTTGAAGTGTGGGATGGAACAATACGCCGACTTGCGACTCCTATGTGCAGACGGCGCCCCTAGGTGTAGCGTCTTC # Right flank : TACACGCACGAGCCATATCCGCAGCGAATCCACGTCACAGCAATGCAAACGCAATACAGAAGCAAGCCAAACGTGAGGCCCCTTACCAGTCCAGCACAACAAACCTCCGCTTTGGCTACGGGAACTGACGTCTACTTGCCGGCCCAGCGCAACAGACCACCATTGTGGTGGCCAAGTGCGGCCTGTTCTGACCGCAACGGATTACAACAGCCATAGTTCCACGCCCAGTTGCTCACTCCTATATCCACTATCCAGCCGCTGCCCAAACCCACCTTGACGCATACGACGCACACACGGATTGCATATCGAATCGCCCGCCCCTACTCTTTCCATCCCTCCCACCAAGTCGAACACGCTTTGGCCCGCGGCACGCACCGCATGTCGCGCCACCCCCATCTGGCGGTCGTTGTCGTTAGTATGGTGGCCAATCGCACAGTGATGCCGAACAACAGCACCGCCATGCAGGCCAGGTGCGGCGGCACTTGGTGCATCGCCGCACC # Questionable array : NO Score: 2.85 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCACCGTGGTACAAACACGA # Alternate repeat : GTACCACCGTGGTACAAACGCGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 233082-232846 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000004.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =========================== ================== 233081 26 88.5 26 ...................G.A.C.. AGATAGGGGCAAAACGTACCGCTTCT 233029 26 92.3 27 .......G.........C........ GGATTTCGAGCAAAAAGTAGCGTCAAT 232976 26 96.2 27 .................C........ AAACGAGCCAAAATCCGTAGCGCCAAC 232923 26 100.0 26 .......................... AAATCCAACCCATCCGTACCGCATTC 232871 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =========================== ================== 5 26 95.4 27 GTACCACCGTGGTACAAACACGATAC # Left flank : CAAGCCAAACAGCACGGCGACGTGCCGATTGGGGCGTGCGTGCTCGACGCGGGCGGCCGTGTGATCGGGCGCGGACACAACATGCGCGAACGCAATCTCGATCCGTTGGCGCACGCCGAGATTGAAGCGATGCGTGAGGCCGCGGCGACGCTCGGAAGCTGGAACCTCGAAGATTGCACGCTCGTGGTCACGCTCGAACCGTGCCCGATGTGCGCGGGCGCTTGCCTGCAAACGCATGTGGGGCGCATCGTGTTCGGTGCGTGGGATGCCAAACTCGGTGCCTGCGGGTCGGTCTGGGACCTGCCGCGTGACCCCCATATTGGCGCGCACCCCGAAGTCTACGGCGGCATCCGCGAATCCGAATGCGCCCAACTGCTCACCGCCTTCTTCCGCCTGCGCGGGTGATGCGGGGGCGGGGCGAATTGGAGGTGGGGTGAAGCGGAAAATCTGCCGTTTTGTCGACTTGTCGTGCGGTTGGGCGCTCCACCTGTATCGTTTCT # Right flank : GGATTTCGAGCCGTTTATGAGTGCAAGGCAACGCGCGGGGCGCCGGCTGCTATCAGCTCACCAAAACGTGGCGTGAGCGGCACGGGGCAAACTGGCAGATAGGGCAAGCTGGCGGCTGCCGCAAGCCCAACAAGTGCGGAATTATTGGATTACGCCGGCGTTGGGGTCGGTGACGGTGCCCGCGTCGCCCGTGTTGCCTGCGTCACCACCGGGAGCGACCTGTTGGACTGGTTGCTGCGGCAGCTGAGCCTGCTGGTTCTGCAGCGCTTGCTGGTTCTGCAGCGCTTGCTGATTCTGCAACGCCTGCTGTTGGGCCAATGCTTGTTGCTGGGCCAATGCCTGCTGTTGCGCGGCAGCGGCGGCTGCGGCGGCGTTCGCGTTGGCGAGGTCGGTGATTGAGGTTTGCACAGCATCATTGGCCTTGGTCAGCGCATCTTTGGCTTGTTTGACCTGATCAGCCGTCAGTTCCTCAGAACCGGCAAGCTTCTTGGCATCGTCGA # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.20, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTACCACCGTGGTACAAACACGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 1-578 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000020.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont19.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1 27 93.1 32 --........................... GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 60 29 100.0 32 ............................. CAATCTTCTCTCTTGGCTTCCCGCTCGATCGT 121 29 100.0 32 ............................. GCGCAGCCGTCCATCATGTCCAGCATGCTTTC 182 29 96.6 32 ............................T CGCGTGGTACTCGTCGTACGTGCGGCCCTTGC 243 29 100.0 32 ............................. CGCAGCGACGACTACGCGCGAGCGCAACTCAC 304 29 100.0 34 ............................. GCAGTCGAGAACTCGCGTCGGCGGGAATGGTGAC 367 29 100.0 32 ............................. CCGGCTTCCTGCAGTGCGGTGACGTCGTCGTC 428 29 100.0 32 ............................. GAAGCAGAAACACTTACGAACGAAGACGAACC 489 29 100.0 32 ............................. GCTCGATGGTTTGAGGCCAAGCACTGCGCATT 550 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 10 29 99.0 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : | # Right flank : GTCGCTTCCATCTGCCCGGTCTGATAGTTCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 82549-82783 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000002.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================ ================== 82549 25 100.0 27 ......................... ACTGATACGGATTGCTCCAATATGTAG 82601 25 92.0 28 ......T...............G.. CACAATACGGATTTTCGCCAGAATGTGT 82654 25 96.0 28 ......T.................. CACGATACAAAAGCGTCAAAATCCGTAT 82707 25 88.0 27 ...CG.T.................. GACAGTACGAATCCGCCTATCATATAG 82759 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================ ================== 5 25 95.2 28 CGCGTTCGTACCACCGTGGTACAAA # Left flank : TTCCGGGGATGCGGTGGGGTCGGATGCGGCTGAGGCGGCTGGCGCGGGGGAGTCGGTGTCGACTTCGCGGACGCAGGCGAACACGATGCCGCCTTTGCGTTGGGATGCGATGAGCTCAATGACGCCATCGGGGATGTGGTCGATGTCTGCTGCGAGCTTCAAGCCCAATACGAGCACTTCTGGCACATGGGGGACTGGTTGCGTATTGGCGGTGCGGTCGGTCAATATGCCGAGCAGATGGATGGATGCCACATGCTGGGCGAGCTGCTGGTAGACGCGTTTGGGCAGCTCCGCCGGATTCTTGCCAGCGAACATGGCCTTGGGCAGCCGGCCCTTCTGCTCAGGCGCCGCCGCTGCGGCAGGCAGCCCCAAATCCGTAATCGTCAGCGAACCGCATGTGCTGAACTCCTGAGTCATGGATCCCTCCTCATGTGCTGTGCTGCAGTGCCGCTGTGCTGCTGTGCTGCAATGGTACAAAACGTGGCGCGCTCAAGGTGTAC # Right flank : ACACGATACGTTTTCTGCGCGTGTTTACTCCCAATTGCTTTGCTTGCTGACTTGATCTGGACGATGAAGCCGCATACATAGCAGGAGCCGTTATTGCAAGCAGTTCGTTCAGGTGCACAGAAGCCGAAAACAGACAAGAGGCCATTTCGTCGTGTGTGATGAACATGGCCTCTTGCCGTTGGTGCCCCAGATCGGATTCGAACCGACGACACCCGCTTTAGGAGAGCGGTGCTCTATCCACTGAGCTACCAGGGCAACAGAGACCGATTATACCATGCTGCACGGTGCTTGCGGCAGCATGTCGTTAGGAATCCACGCATATATGAGCGCGGGCGCGTGAACAGGTGGCGCCATAGGTGGGCTGGGGTGATGCAGGTGACCTGAGTATGCTGGACGCTTGCATTCTTGTGTGGCGCACAGCGTTGCACACGAATGCCGGTGAGTACGCATAACGGATTGGAACGGTGGTTGATGAAACATCATGCGATTGCACGCATGCT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGTTCGTACCACCGTGGTACAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 126320-128120 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000002.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126320 29 96.6 32 ............................T AGTGTCAGCTTCATCCCCCTGAGAGGCCTCAC 126381 29 100.0 32 ............................. CGCTGCCCCACGATGTCCCAGGAGTGTGCACT 126442 29 96.6 32 ............................T CGACGGCCGCGCCGTCGACGTAGATGCCTTCC 126503 29 100.0 32 ............................. CGGGGCAGTCCGGCGCGCTTGTTCATGGGAAC 126564 29 96.6 32 ............................G ACAGCCACACGTCCGGCGTGTCCCCATCATAG 126625 29 96.6 32 ............................T CAGGGGGCTGAAAATAGTGTCAGCTTGCATTC 126686 29 100.0 32 ............................. ACGCCGATCGTGCCCAGCCCAGGCTCATCCTC 126747 29 100.0 32 ............................. AGCCAGAGCCCTGTAGGCGCGACTGTGCACGG 126808 29 96.6 32 ............................T CGTGCACGTCTTGCTCGCTTCGCTCCACCCGC 126869 29 96.6 32 ............................T CCTGTACTGCTGGGATGGTCCGTCGCGTCGTA 126930 29 100.0 32 ............................. ACGACGCTCGTCGCGCAACTGCACGCCGTAGG 126991 29 100.0 32 ............................. ATGCGCTCGAACTGCGCGTGGACGCTGGTGCC 127052 29 100.0 32 ............................. GCGTCGCAGTCCTCCAGATAATGCTTTTTCGC 127113 29 100.0 32 ............................. CAAGACCCGCCGCGTCTGGCAGCGCACACTCG 127174 29 100.0 32 ............................. GCCGGTGGCTCATCGCGTTCGACGTAGCCCCA 127235 29 100.0 32 ............................. TCAGGTTTGGTCGCGCCAATATTTTCAGGCAA 127296 29 96.6 32 ............................T GTTTCATGCGCAAAACTACGCTGTTTTTTCGT 127357 29 100.0 33 ............................. CGGGACGTGACCGCAATGTGCACGTGGACATCG 127419 29 100.0 32 ............................. CAAAACCGCGGAATGTTGCGCATAAGTCAAAC 127480 29 100.0 32 ............................. ACGTGAGAGACGTGCTCGCCATCGTACTCATG 127541 29 96.6 32 ............................T GCGTGGCCTTCGACCTCGATCAGTGGTTCACG 127602 29 100.0 33 ............................. CTGAGAATCACCGCCAAGGCCACCTACATCGAC 127664 29 100.0 32 ............................. AGTTCGGCATCAATGGCGTGCAGGCCATACTC 127725 29 100.0 32 ............................. GGAGCCGCGTCGTGGCTCGATGTGAGCATCCG 127786 29 100.0 32 ............................. AGCCGATGACGGAGCCGGCACAATTCGCGGCC 127847 29 96.6 32 ............................T CGCGATCCACGCGCTTGGGGGGTATGCTCTGT 127908 29 100.0 32 ............................. AGGTGTACGAAGTCACCGACAGCGTGAACCAG 127969 29 96.6 32 ............................T AATCGGGTGAACCCTCAGCTTCTGTGGTGTCG 128030 29 100.0 33 ............................. AAAGACTTCGCTTTCCAATGGCAAGAAGCGGAA 128092 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.8 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : ATGGTCGTGATAGTGCTGACAGCCTGCCCTCCAGGACTACGCGGAGACTTGACACGCTGGCTGCTGGAAATATCTCCAGGAGTATTTGTAGGACACGTCAGCGCCCGCGTGCGAGACAAACTCTGGGAACGCATTGAAGAACTCGTTCGGGAAGGACGCGCCATCATGGTATACAGCGCCCGCAATGAACAGCACCTCGCGTTCCGAACTCTACGCAGTTCTTGGACTCCTGAAGATGAGGATGGGCTTACTTTGGTGCGGCGCCCTTTGGAAAACCGTGACAACAGTTTCTCCGGATCCCGTAAAGATGGATGGAGCAAAGCGTCACGTTATCATCGCGCTCGCAAGTTTGGAGGGCGGTGATGTTGCGTTGCTGGGGGTTTTCCATTCTATTTTGATTTCTGCCTATGCCGCATGAGTTTGCGTGCATCATATACAGACTAAAGGAAAACGATGATCAGCAGGATGTGGTATGGTTGGAACCACTGGGATTTTTTAGG # Right flank : TTGTTAAAGTACACCTATGCGTCATCTAGTAGCAGGCATCGTAGCTCATGTGGATGCGGGCAAGACCACGCTATCCGAAGCGTTGCTGTATCGTGCGGGAGCCGTGCGCAAGCTTGGACGCGTGGACCATGGGGACGCGTTCCTGGACACCGACGCGATTGAGCGCGAGCGCGGTATCACGATTTTTACGGAGCCGGCTGTGTTGCAATTGGATGGCACTGCGGCTACCACAGAAATACACAATAATAAAGCCCAAACCGACCCCTCCGCACCGCAACATCCGCACGATCCTTTCCAAGACGACCCGCTGCAAGTGACATTGCTCGACACTCCCGGCCACACGGATTTCTCGGCGGAAATGGAGCGCGCGTTGACGGCGCTTGACTATGCAGTGCTCGTTGTCAGCGCGACGGACGGTATTCAGGGCCATACGGAAACGTTGTGGCGGCTGCTCAAGCGTTACGACGTTCCGACGTTCATTTTCGTCAACAAAATTGATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 138644-139219 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABXB03000002.1 Bifidobacterium gallicum DSM 20093 = LMG 11596 strain DSM 20093 B_gallicum-1.0.1_Cont1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 138644 28 100.0 33 ............................ CGCGCCAATCAACTGTTATCTTGACGATTTCAG 138705 28 100.0 33 ............................ TGCCACGTTCAGCCTGCGCACCGCGACGGGTGA 138766 28 100.0 33 ............................ TGCCACGTTCAGCCTGCGCACCGCGACGGGTGA 138827 28 100.0 33 ............................ CACAAGCTCGGTGATTCGATACTCGCCAACGTT 138888 28 100.0 33 ............................ TTCATCCGCTGGGTAGCCGACCGCAGAAGCAAA 138949 28 100.0 33 ............................ CTGCATCGTGTTGAACGCGGGGAACACCTTGGA 139010 28 100.0 33 ............................ CAAACGCTTCGTGCAGCCCGCCGAGCCCGTGAA 139071 28 100.0 33 ............................ CGCGGCCACGCGGCGGTCATGTGCGGCGCGGAC 139132 28 100.0 32 ............................ CAACCACAGGTAGCGGAAACCCGAACCGTGCA 139192 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 33 GGTAGCCCCGCACACGCGGGGATGATTC # Left flank : GCGGTGTTTGGCTATCGCGCCGCAATGCGCGCAACGTTTCGTGGTGTCGGATGGATTGACGGGTCGAAGGATGCGGCCGTGTTTGAGCGCTTGCCATTCAAGCGCCTGCTTGGTAGCAGCTATCGCACCGTCGGCGGCTTTCCTTGCCATGGTCGTTTTCGACAGGAACTTCGGTTTGAAGTCCTCGATGGCGATATTGTCATGGTCCTGCACAATGTGGCGCGCCCACTTGTTCGCCGTGTCCTGCCGTTGGCGTTGGACACGGCGTTGGATTTCAGCGGCGCGACGCTTGTTCTTCAGGTACCTGTTGGAGGGTTTCTTGCCTTTCGGGCGTCGTTCCTTGGCCATGCGTCGTTGCAGTCGGGCAAGTTCGAGGTGCGCTTTCCTGCCGTATTCGGGATGGGGCAGGTCGTATGCGCCGGTTTCGTCCACGATGCCGTTTCCGTCGATGGTCGCGCAGGTCATCAGCGTGCTTACACGAGTAGCAGCGACCCCCGTGA # Right flank : CCTACCCCGCCATCCGAGAAACACGCATGCGGGCGCTCGAACAACTCGAACGCGAAGCGGCGAAAGCGGACCGCGTCGTAGAAGCCATCCTCAGCCAAGACGACGCCTTCAACGTGGAAACCCAGCGTCAACACCAGCGACACAAGCGCATCGCCTACGCGGCCCACGAAATCGCCGACAAATACAACTTCCTGCTCACCGACACGGAACAAGCCGAACAGGCCGACCTGCTCCTGCACTACAACATGCTCGACGACTGGAAGCATTGGCTCAGCTGCAAAACCGGCACCCACCCCAGCGCCCAGCGCGTCAAGGACGCGCTCAGCTGGCGCAGCAACGACAGCGTCATGCAGCAGGCAGCAAAGAACGCCCTGAAAACCCTCGACGGCATCACGGAACCCAGCAAAGCCATCATCATGCTCGCCGCAGGGCTTGCGGAGAGTGCACTGTCATGCTTATTTGGCCAGGAATGCTTCGACTTTCGCACCATCCGCGAAGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTAGCCCCGCACACGCGGGGATGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //