Array 1 43-405 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXU01000174.1 Staphylococcus felis strain F15 k127_431, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43 36 91.7 29 ............CT.G.................... AATGGTACTAGAAAGAAAGGGGACGAATT 108 36 97.2 29 ............C....................... TTTGGTTTTTTAACAGAACTGAGCAAGAA 173 36 100.0 29 .................................... TGAAGAAATCGAACAATTAAAATCTGAAA 238 36 100.0 30 .................................... TGATCCAGGGAAAGGTAACTTATACACGGC 304 36 97.2 30 ..............G..................... ATGATGTACGTACCATGTACATTGTCCCCA 370 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.4 30 GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Left flank : AGGAAGTAAAACATAGTAAATTGATAGTGCAGAAATTGAAAGG # Right flank : CATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 19938-21485 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKXU01000175.1 Staphylococcus felis strain F15 k127_432, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19938 36 86.1 29 ..........CGC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 20003 36 97.2 29 A................................... GTATGTACGATATTGTTTCAGTGGACAAC 20068 36 94.4 30 ..............G..........A.......... TTTTGGTACTGTGTTTAGTCAACAAATTAA 20134 36 94.4 30 ........G................A.......... TTGTAGACTGCACTGTAGGTACGTCAGCAC 20200 36 100.0 29 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAA 20265 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 20330 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 20396 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 20461 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 20526 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 20592 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 20658 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 20724 36 97.2 30 ..............G..................... TTCAGTATTATCGTTACCACCATTAACACG 20790 36 94.4 30 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGC 20856 36 94.4 30 ........G......................G.... TCCATAATCTCCGAATTCTGACACAATACT 20922 36 86.1 30 ........GT...............AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 20988 36 97.2 30 ..............G..................... GACATTCAATCTCTTTTCATACGAAGAGTT 21054 36 100.0 30 .................................... ATTAATCCAATTACCTAAAGGGTTAATCGT 21120 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 21186 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 21252 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 21318 36 100.0 30 .................................... CCATCATTTTTATAATAATACTTTTTACGT 21384 36 97.2 30 ............C....................... ATATTAAAGACATATTGCAGAAAGTGAAAG 21450 36 97.2 0 .........................A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 96.5 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCAATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATCATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTATAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : AATGCTAATGTTAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //