Array 1 1-148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBD01000128.1 Vibrio cholerae isolate V. cholerae BRV8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 61 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 121 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : | # Right flank : AATCTCGATAACTTCAACGCTGTTCGGATCACGTTCACTGCCGCACAGGCAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 48070-46421 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBD01000049.1 Vibrio cholerae isolate V. cholerae BRV8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48069 28 100.0 32 ............................ AATAGCCGCCAAAAACATCTGTTTTGCTTAAT 48009 28 100.0 32 ............................ ATGCTTTTTAAAGGCTTCTTCGACAAAGGCAA 47949 28 100.0 32 ............................ TGACTCCTGTGATTTCATAACCATCACGCTCT 47889 28 100.0 32 ............................ TCATCAACAAACACTACTCGCGTTGGTACTGA 47829 28 100.0 32 ............................ GTTTTGAGTAGACTGATAGAATTTGCTTTGCC 47769 28 100.0 32 ............................ GTTATCCCAAATACGAGATGCGATATTGTTGG 47709 28 100.0 32 ............................ ATTGTAACCGATCATGTGAAGTTCTACTCTGA 47649 28 100.0 32 ............................ ATGATTTGGAAGCAGGTTGTTTCATCCGATTG 47589 28 100.0 32 ............................ ATAAGACGGATGACGTTTACGCCATGAGTCGT 47529 28 100.0 32 ............................ GCACGCTTTGTACGCCGAGTCGAGCCACTGGT 47469 28 100.0 32 ............................ TCGATGCCGTCGTTTTCGTCATCCTCGACTAA 47409 28 100.0 32 ............................ CATAACCTGCGCTTTTGTGCCTTCAGGTGTAT 47349 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 47289 28 100.0 32 ............................ CTCACGGGGCGCAGCAACCTGTAACGATTGAT 47229 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 47169 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 47109 28 100.0 32 ............................ TCCAGCGGCTTACCTTGCATCTTGCGAGCCGC 47049 28 100.0 32 ............................ AAGCCGTGAGAGTCTTTCTTGATAGTGATTTT 46989 28 100.0 32 ............................ TGCACGAAATAGTAAATGAAGCATTGACCAAT 46929 28 100.0 32 ............................ ATTGGCGTTAAATAGTGGGTTCATTATTTTTC 46869 28 100.0 32 ............................ TGTAGACGCATGTTCAGTTTAACGCGGTATGG 46809 28 100.0 32 ............................ GTTTTTAAATTGCCCTTCGAGTTCGCTTTTTT 46749 28 100.0 32 ............................ TCGCTTACTTTCATTCCAGTTACTTCGTAGAT 46689 28 100.0 32 ............................ TTTTTCCCACCCCATTTGCTCGAAAGTTCTTA 46629 28 100.0 32 ............................ AGAACGAACGCGACTCGCTCTAGTATTATTTG 46569 28 100.0 32 ............................ CCTATGCCCGATAAGACAAAGAAAGGTAACGT 46509 28 100.0 32 ............................ AATCTCGATAACTTCAACGCTGTTCGGATCAC 46449 28 92.9 0 ......................G.A... | T [46429] ========== ====== ====== ====== ============================ ================================ ================== 28 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCCTTATATATCTTATGGTTGAAGCTCTCAAAGGTTGAGGGTTATATAAATGACAGTTTGCTTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGGTAGCGTTTCTCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACTAAAATCGACCATTAATGCCACTACGGATATGAGTCAGTCTGCTTTTCTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGTTCACTGGCTGGCCTTGGTGAACTCTCGGAGAACTTCCTTGGTGTGGGTGAGGGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTATCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2004-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBD01000142.1 Vibrio cholerae isolate V. cholerae BRV8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2003 28 100.0 32 ............................ TCTTATCGCTGGTGGACTCGCTTTAGAGCAAG 1943 28 100.0 32 ............................ GTTCTTGTAAATCGCAACGCCGTGCGCTTCTG 1883 28 100.0 32 ............................ TCAGAAATAAATAGCGGGCACTTGGTATTCAA 1823 28 100.0 32 ............................ TGATAAAGTTTCTGCTGACTCATTTCGCCATT 1763 28 100.0 32 ............................ AAACGTTGAGCACTTCTCAAATGAGATAGAGT 1703 28 100.0 32 ............................ AATGATGAGGAACCGACTGGTTGCGCGAGTGG 1643 28 100.0 32 ............................ GATAAAGACGATATTCAGACCAAAGTTTTTAA 1583 28 100.0 32 ............................ TGAATGAAGTAAAGGCGTGTATGTCATCTGGA 1523 28 100.0 32 ............................ TTGCTTGATGGTGAAGTAACCGCGATCGATAA 1463 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 1403 28 100.0 32 ............................ AAGCACATAGCCAGACATCATCGAACCACTGG 1343 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 1283 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 1223 28 100.0 32 ............................ TTTTCTAACGAGTCCATGCGATAAGCAAAAAA 1163 28 100.0 32 ............................ TTCAAATAGAGGGCTCGGGCGGCTTGTCGGAT 1103 28 100.0 32 ............................ TTAGTTTGGGATTGTCGTGTGGTGTGTCCGGT 1043 28 100.0 32 ............................ AAACGAAAGCCGTAGCCATACAGTTAAAGTAA 983 28 100.0 32 ............................ TCTACGTTTACTTCAAAGCAGTATCTTGCTTT 923 28 100.0 32 ............................ TGTAAATAATATTTCTGCCAAAGTGTAGAGCG 863 28 100.0 32 ............................ TGAACGAGTTGGACAAACTCAGGCTCAGGCGA 803 28 100.0 32 ............................ TTAACCAAATAGCTAGGCAGTTAAACAGCGCT 743 28 100.0 32 ............................ TGGCTTCTTGTTGGTGCGTGTACGTGGAGTAA 683 28 100.0 32 ............................ TTTTCTCAGTGCCTCAACAATGCCCACGCCAC 623 28 100.0 32 ............................ ATTTAGCCTAGCCGCCGCCTCTGCGGGTGCTT 563 28 100.0 32 ............................ ACAACAGCAAGGCTTATCCACCCGAGAAGCAT 503 28 100.0 32 ............................ TCAAGCAAATCTCGATAAGCTTGATCGCTGAG 443 28 100.0 33 ............................ ATAATACACCACACAAGAGAAACGCCCCTTAAT 382 28 96.4 32 ...........T................ GAAACTTTCGTTATTAGTGATGGTGAAGGCAC 322 28 96.4 32 ...........T................ ATGACGCAGCTATCGATATTAGTCAAGGTAAC 262 28 96.4 32 ...........T................ ATCACTTTCGGGTTCCGTTTGTTCACCTTCGG 202 28 96.4 32 ...........T................ AAACGATGAGATCTGTAAAAATGGGGTTTTGA 142 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 82 28 89.3 0 ..........AT.............T.. | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.1 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTGCTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGGGCGGGATCGAACTTTAACCACTGAAAATAAAAGACTTTATTTTATTGGGAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //