Array 1 942505-944119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044967.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942505 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942566 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942627 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942688 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942749 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942810 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 942871 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 942932 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 942993 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943054 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943115 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943176 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943237 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943298 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943359 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943420 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943481 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943542 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943604 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943665 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943726 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943787 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943848 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943909 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943970 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 944031 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944092 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960252-961728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044967.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS007098 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960252 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960313 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960375 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960436 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960497 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960558 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960619 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960680 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960741 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 960802 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960863 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 960924 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 960985 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 961047 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961150 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961211 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961272 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961333 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 961394 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961455 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961516 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 961577 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961638 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961699 29 96.6 0 A............................ | A [961725] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //