Array 1 107866-106389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNP01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1572 NODE_2_length_344494_cov_0.221281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107865 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107804 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107742 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107681 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107620 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107559 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107498 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107437 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107376 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107315 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107254 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107193 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107132 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107070 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106967 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106906 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106845 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106784 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106723 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106662 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106601 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106540 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106479 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106418 29 96.6 0 A............................ | A [106391] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125490-123997 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNP01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_1572 NODE_2_length_344494_cov_0.221281, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125489 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 125428 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125367 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125306 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125245 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125184 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125123 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125062 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125001 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124940 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124879 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124818 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124757 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124696 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124635 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 124574 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124512 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124451 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124390 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124329 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124268 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124207 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124146 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124085 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124024 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //