Array 1 8697-10375 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRA01000004.1 Campylobacter concisus strain P16UCO-S2 NODE_4_length_257266_cov_57.9454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 8697 30 100.0 38 .............................. TTCATATAATCCATGTAAAGATTATTTGAAAAATCAGA 8765 30 100.0 36 .............................. GTTTAAACGGGGTTGTATATGTGACAAAAAGCCAAA 8831 30 100.0 35 .............................. CTATGCATGATCTTATCCAGTCAAGGGATATCAAA 8896 30 100.0 37 .............................. GAGTAGTCGCCATTTAAAGCACCCCTAAAACAGCCGT 8963 30 100.0 37 .............................. TACGAGGTAGAAGCACAAATAGATCCGCTAGCAAGTA 9030 30 100.0 36 .............................. TACAGCGTTTCCTATCCTGCGCCAATTCCGATCTAT 9096 30 100.0 35 .............................. TCATCTACATCATCTTCACACTTATCATCATCTTT 9161 30 100.0 35 .............................. ATACGAGCTGGCATTATAAAGTATCCATGTGTGGA 9226 30 100.0 34 .............................. AAAGCTACGAGATCGATATAAACGAGATACAAGA 9290 30 100.0 35 .............................. CCGATTATGAGTGCGTGGCGTATATAGTTTTCGCA 9355 30 100.0 37 .............................. TCGACTCACGCCTTACTTCCACTATTTTGGATAATTG 9422 30 100.0 35 .............................. ATGAAAAAGTAATAGATATAAAAGATAGAGATGGT 9487 30 100.0 36 .............................. GCGTGATCGTGCTTAGGATATACTCATCATCGTATA 9553 30 100.0 35 .............................. ATAGCATTAATAGGCAAAGGGATCATAAATCCGCC 9618 30 100.0 34 .............................. GTTGATGCTGGACTTTGCGAGATGAAAGAGCGCT 9682 30 100.0 37 .............................. ATAGCGTAAGCTCGGTCTTTTATATAGGTTTTTTGAA 9749 30 100.0 38 .............................. ACAAGCAAGGCTAACAATATAGCTATTGTTACCGATGA 9817 30 100.0 38 .............................. GGAAGTTTTACATCACACTTTATAGGGATATAGACCTT 9885 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 9953 30 100.0 36 .............................. AATTTGTTTCGGTAATTGTAAGCTTAAATGTTACTT 10019 30 100.0 38 .............................. TATTTGACAAGAGTTATGCAAAACGGACAACAAAGAAA 10087 30 100.0 35 .............................. GGCTTTAACAAAGATATGATAACGCCACACGGCTT 10152 30 96.7 36 ....A......................... GCATTTGCAAATTTTGCATCGCCATAAAGCTTTCTC 10218 30 96.7 34 ...............A.............. TAAGGGTGATAGCGATGCAGTAAATGCAAAAATC 10282 30 100.0 34 .............................. CGGCTTATCTCAAAGCTGTCAAGTATCTTTTTGT 10346 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.7 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATTGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGTCTTTGCGAAACGCTCACGGTGGGCGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAACAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAGAATGCTTGAAATTTAGGGCTCTGCGTATTTGTACATGGCTAAATTTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTACAAATAGGCTTTTTAGTGCT # Right flank : CAACGCATAAGCGACAAATTTAAAAGTCAAAAATTTTCAAAAAAGAGATTTAAAATAATAGATCAAATAAATAATAGTTGCTATCTTGCAAAGATGTATCAAACGAACGATAATATTGTTTTATATAGATACTTCAAAAAGCCAAAACCCCAGCCAATACAGCAAAAAAACAAGCTAGAAATAATAATGAAATAGACTAAGCATAAACCAGCTTAATATCAAGAGCATTCACAACCTTAAATATACTTTCAAATCTAGGCTTTGAATTCTCTTTAAACATCTTATAAAAGCTTTCTCTATTTAAATTTGCTTTCTTTGCAACGTTTTCAATGCCTTTTGACTTTGCTATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 11222-11585 **** Predicted by CRISPRDetect 2.4 *** >NZ_PIRA01000004.1 Campylobacter concisus strain P16UCO-S2 NODE_4_length_257266_cov_57.9454, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 11222 30 93.3 36 ....................GA........ ATTTAGCCTCTGTTCTATCGCACTTATCAGATCTTG TTA [11230] 11291 30 100.0 36 .............................. CGTGTGATCGTATAGCCTGCTACGCTTGGGTTTTGT 11357 30 100.0 36 .............................. AGCATTCCAACTGGTGTTTGAGCTATTCCTGCACGT 11423 30 100.0 38 .............................. ATATGTCTTGCTCGTGAGCCTTAGCCCAAGCCCATCTC 11491 30 96.7 35 .....................A........ TTCTTTGATCATTTGGAAAGCCGCCTTCAACTGGA 11556 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 98.3 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : ATATAAAATAATGCTCTTTTAAATTCTTCAATATCGCCATCAGCTAAGACTTGATTTAAATACTCTTTTCTTAATTCATCAGTTGTTAAGTAGTCTTCTAAATTAAATTTTGTAAATTCTTCTTTCATCTATAATCCTTTAATATCTCTTTTGCTTTTTTAATATCATCGCTTTGGCTATCTTTATCGCCAGCATTTAATAATATAATTATTTCATCGCCATCAAAGGTAAAAAATATCCTTAACCCACCACGATTGAAAAACCTAAGTTCGTATAAGTCTGTATCTATAAATTTATAATCCCCTAAATGATCTTTTGTTTCTATCTGCTCTAATCTTCTTAATATAGAAACCTTGACAATAGGATTATTTAACTTATGCAACCACTTATCAAATGTTGAACTTTTTAAAACTTTCATAGGGCAAATTTTAACAAATGTAGCTTAATGGCTACTTATAAAAAATAGCGTATAACACTCATAACCCGAAGGTCGGCGGTTC # Right flank : CCCACCAAACATGGTTGACGACAACCGCAATCACTCTTTTGATAGTCGTTTTTTCGGGGCAGTTCCATATAAATTTTTAGTTGGCAAAGTTAGATGGCAGCTGTTTTGACACAATTCAGAAAAACGCCTTGACCAAATATAAAATAAAATAAATTATCGGATCAATGAAATTTAAAGAAGGTTATAATACTTTTTGTCAATTATAATTAAAACAAAAAATATATGAATTTATAAAACCCACTTGTAAAGACAAGCAGGTTTTAAAATGTTTTATTTCTCTAGTTTTTCTTTAAGTTTTTCTTTTTTAGATTTAGCTTTTGAAGCAGCTTTTTCTTTCTTTTCTTTTACTTTGTCAACAACTTTATCTTTTTCATCTTTTGCTTTTTCACCCATACTAGTTTCATCTTCTTTGCTAGAAGCTAGCTCTTCTTTAGTTTTAGAAGCTTTCTTTTTTAATTTATCTTTTTTATCAGAGATTTTATCTTTCATCTCGTCTTTTG # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //