Array 1 24850-25214 **** Predicted by CRISPRDetect 2.4 *** >NZ_VADV01000119.1 Campylobacter coli strain MON354 1012000119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24850 36 94.4 30 T............................G...... AACTTTAATCAGTAGAGACCAAATGAGTAG 24916 36 100.0 30 .................................... CTACTGTGCCGCCTGCTATAAAGTTTGTGT 24982 36 100.0 29 .................................... TATCTTATAATCTATATTATGCTTTAGTG 25047 36 100.0 30 .................................... TATTATCCAAGTAAAAATAAGAAGCAAACT 25113 36 100.0 30 .................................... TCAAAATTAAGAGAACATGGAGTATTAATG 25179 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.1 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : GAAGATTATTTTGCTAGGGTTGCTATAAACTGCGTAGCATTGTTTATTTTTATTTATGCTGCGGTAAACATTTCGATGACTATAGGATTTGCGCCTGTTGTTGGTATCCCGCTGCCTTTTTTTAGCTATGGAGGAAGTTCTTTTACGATTTTTATGATTTTCTTTGGAATTTTACAGCATTTGATTACTTTTAGATATTTTTGGATAGATAGTAAAAATAAAATAAAATAATTTTAAGCAAAAATAAGATATAATTTTATCTTTAAAAATTAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCATTACTTTAAATATCTAATCTTAAATATGCATTAAACTATTCAAACTTTAAATAATATTTAAATCATTTGCTGTCACCATAAGACAAAATAGAAATTAATATTTTTTAAGTAAAATCTTTTATATATAGTGCTTTAGTTGATGATGAT # Right flank : AA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2-627 **** Predicted by CRISPRDetect 2.4 *** >NZ_VADV01000200.1 Campylobacter coli strain MON354 1012000200, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2 36 100.0 30 .................................... TATCAATAATGATACTTTTCCTTTTGGAGA 68 36 100.0 29 .................................... TGGATATTAAAAGAATAATTGTTAAACCT 133 36 100.0 29 .................................... GTAACTATATCAAATGATGACTAATTTGT 198 36 100.0 30 .................................... TGCAGCTGCTTGGCTTACTTTAAAACTTAG 264 36 100.0 30 .................................... AGCTTTCATTTTGTTTCTTTAAGTTACTAT 330 36 100.0 29 .................................... TTCCTTGCGAACATTAATATCTACACTTG 395 36 100.0 29 .................................... GAAGCCCTGCAAAAAGAATTGATTGAAAA 460 36 100.0 30 .................................... GCACAAGATGCTATAGGTGATATTTTAATA 526 36 100.0 30 .................................... CTTGTGTTTGCATTTATAGCAATAATTTTT 592 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Left flank : GG # Right flank : TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTTATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //