Array 1 95515-94877 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBB01000011.1 Escherichia coli strain C056 C056_NODE_11_length_155132_cov_37.9525_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95514 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 95453 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 95392 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 95331 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 95270 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95209 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95149 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95088 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 95027 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94966 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94905 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112570-111016 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWBB01000011.1 Escherichia coli strain C056 C056_NODE_11_length_155132_cov_37.9525_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112569 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 112508 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 112447 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 112386 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 112325 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 112264 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 112203 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 112142 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 112081 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 112020 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 111959 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 111898 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 111837 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 111776 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 111715 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 111654 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 111593 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 111532 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 111471 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 111410 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 111349 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 111288 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 111227 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 111166 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 111105 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 111044 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //