Array 1 36241-35012 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBY01000067.1 Pseudomonas fuscovaginae strain IRRI 7007 Pf_IRRI_7007_contig_67.67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36240 28 100.0 32 ............................ TGTCGTCCGAGTTCTCGGATCTCAGGCCGCGC 36180 28 100.0 32 ............................ GCATTGGAGGCTGCTGCCTTACTTCTGGATCC 36120 28 100.0 32 ............................ CGACACACTATTGGGCGCATTCATGCTGCAGC 36060 28 100.0 32 ............................ TGCTGCTGACGCGTACCGGAACCCGGCGCGCC 36000 28 100.0 32 ............................ ACGACGGCCAGTATCACGCAGGGCACTATCGA 35940 28 100.0 32 ............................ ATCAGACTGGCGAATGCCTGAGCCTCGGTGTA 35880 28 100.0 32 ............................ TGAAGGTGAAGCCATGACCGACTTCGAACTGA 35820 28 100.0 32 ............................ TAATGTTCCTGATAGCAATCCTAATGATCCGC 35760 28 100.0 32 ............................ TCCTGCAGGCTCAATCCGTGAGCCACCAAATC 35700 28 100.0 32 ............................ ACATCGTTGCGAGACATGCCCGTGTCTTTCGA 35640 28 100.0 32 ............................ TGGGATGTCAATCGAGGACGCTCAGTCATTTG 35580 28 100.0 32 ............................ AGGGGGCTTGCTGGCCGTTGACCAGGCTCAAT 35520 28 100.0 32 ............................ AGCTCGCGGTCGATCTTTGCGCCACCCTCGAC 35460 28 100.0 32 ............................ ATTCGTTGATGGTGCGGGTCTTGCGCCGACGC 35400 28 100.0 32 ............................ ACCTGAGCGCGGACCAGGTTACCGGAACCATC 35340 28 100.0 32 ............................ TGGCGAATGCAGATGCACTTGATTGACCTGAA 35280 28 100.0 32 ............................ AGGCCAGCACGTGCGCGCGGGTGACGACGCGA 35220 28 100.0 32 ............................ AGTGGATTCCCAATGCCGCCTCATAGAAGCGG 35160 28 96.4 32 .........T.................. AACGTGACGGCCGCACTGGAGGAACCAGCGGT 35100 28 100.0 32 ............................ ACCGGCTCGCCTTGGTGCTGCTCGGCTGGCGC 35040 28 78.6 0 ...........C........T...TCTC | A [35015] ========== ====== ====== ====== ============================ ================================ ================== 21 28 98.8 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : AGTGAAGGCAGACAGCGGGGCAGCTGTGCGCGAAGTGAGTAAGGCCCAAAGGGACCTGGGAACAGCAGCGCTTCCATCGACACACGTCGACTGGTCACACTGTTGGAAGCTTGGTGACCTAGTGGTGGATCATGCGCAGTGGCGCATCGTAGCCCTTCGGACCCAAGCTACATTTGCAGAGTGCTGACAATGTCAGCGGTACGCATCCAGATGATGGATAACGACAGCGATGGATGCAAAAGCCCATCTGCTACAAGTCATTTCGGTGCATGGGGACATCGGTGAGATCCGGCGCCACCATGAGCCTTGCTTCGCATGTGCCCACCCCTCATGAGCGGTGACACTACCCTGATCGGAGTACCTGCTTTGACCCTCTTTTTTCGAGGTGAGATTGCGCCCTGTAAAATCAATCACTTACGAGGAGGCCTAAAAAGAGGGTTAAACTGGCCATGTCAGGGAATTTTTCTTTGCCGACAAGACTTTATCTGGAAAATGGTCTA # Right flank : AGCCCCCTGATTTTTGACGTTCCCAACCGCGGTGCCGACGGGGTACCACTCGAAGTCGTCGACAGGCAGACACAGGGTTTTGGCGATGTCTTCGGCGCGTGTGGGGGAGAGGTCGGGGTCGATCCATTCGCGGGCGTGCTCGGGCGACAGCACCAGCGGGCGCCGGTCATGAATGTCGACCATGCCCTGGTCGCTGGCGGCGGTGATGATCACGAAGCCGTCGCCCTCGTGGGGCGCAAGTCCCGGATGCACCTGGGCCAATGCCGCGAAGAACATCGGCGCCTGGCTCTTGAGCCGAATGAAGTACGGCTGTTTCTTCTTCGGGTTGTCCGGATCCTTGACCCACTCGTACCAACCGTCTGCCACCACTAGCGCTCGCCCATTCGGCCAGAGCTGCTTGAAGAACTTGCCGGTGGTGACGGTCTCGACTCGGGCGTTGATCGGGTCAGGGCGTTTGCCCTTGGCCCAGAAGGGCGCCCAGCCCCAGTGCACCGGATCAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 39496-38928 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBY01000067.1 Pseudomonas fuscovaginae strain IRRI 7007 Pf_IRRI_7007_contig_67.67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39495 28 100.0 32 ............................ TTCGGCCCGTTGATGATCGTGTCGATGTATTC 39435 28 100.0 32 ............................ ATGCCTCGAAAACTCGTCCTTGAATACTGCTG 39375 28 100.0 32 ............................ TCGATCATGCTGCCGGCGTCGACACTGAACAG 39315 28 100.0 32 ............................ AGGACCAGGGCGACGTGTACTCGGGGAAGATG 39255 28 100.0 32 ............................ ATCCCGATGCGCTGCCCCGGGGCCTGCATAGT 39195 28 100.0 32 ............................ AGAAACGACAAAGCCCGCCGAGGTGGCGGGCT 39135 28 100.0 32 ............................ AAGTGGCAATGGCCGAGCTGCGCGCACGGGAG 39075 28 100.0 32 ............................ TGTGATCGAGCCAGCTCGAATACGAACATACT 39015 28 100.0 32 ............................ TTAGAACCGGTCGAGGCGCCGGTACGATACTT 38955 28 89.3 0 ......................T..CG. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.9 32 GTGCACTGCCGTATAGGCAGCTCAGAAA # Left flank : CTGACCCTGAATTGGCTCACGGGTATGCGCGATCATGTGCAGGTAGGGGAGGTGACGGCTGTGCCGGCCCAGGTGCGCTACCGACTGGTCAGTCGTGTGCAGGTGGACAGCAATCCGGAGCGCCTGCGCCGGCGGCTGATCAAGCGTCACGGGATCAGCGAGGAGCAAGCACGCGAGCGTATTCCGGACAGTGCGGGTAAACGCACCAAGCTGCCCTTCGTGAGCCTGCGCAGCAATGGTAGCGGCAACGCCTTCCCTCTGTTCATCCGCCATGGCGATATCTTGGAGGTCGCTCAGCCAGGCACTTTCAACAGCTATGGTCTGAGCAGCACCGCTACCATTCCTTGGTTCTGATCCATGGCTTTGCGAACCCTCTTTTTCGGACGATTCATTCCCCTTCGTAAAATCAATGACTTACGGAAGGGCCGAAAAAGAGGGTTCTGGAGCCATGTCTGGGGTATTTCCCTTTGCTGTCAGTACCTTACCGGGAAAATCATCTA # Right flank : CGGTGTCGGAGTAGCCATAAACCATTACAGACACTACATGAGCTTGGATAACCTTCCTACTTCCTGACACCGATACGCTCTGTCTGAGCCCTCTAGTCACTGCCACATGACTCTCTCTGTCGCAGTTCTGAGCCTGCTGCTGGCCGCCCGTGGCCACGATAAAACTGTACGGGTCTCAGCCAGTAGCGGGGGGGCAAGAAACTGTCCCGCCCCCAAGCACGATCTGATCAACCGACGCAGTCCATGAGCTTGATCGCCTGCGAATCTGAAATCTCGAAGACCGTAGCTGTTCGAGTGGTACCGATTGCCAAGCCTGCTTCCGTGCTGCTGGAGTGCGACGGTTTGAACAATTGCTTAGGATTGATAGCTAACAGTCGTGTGTGGGGGCTAGCCCATGTCCGCAGCAGCTATAGACATCGCGCAGCACTATGCGCGCGGCTATGATGCAGAGCACTTCCTCAGTGCTTTTTTTGCCCGGAACGCCGCTGTAACTGCGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 49429-48380 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTBY01000067.1 Pseudomonas fuscovaginae strain IRRI 7007 Pf_IRRI_7007_contig_67.67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49428 28 100.0 32 ............................ TTGTTGCGCTGACACCACTCAAGGAACAGTGA 49368 28 100.0 32 ............................ ATGCCGGCACCAATCACAGCCGTGCCAATGTT 49308 28 100.0 33 ............................ CTAGGGATACGTTCGTCGACGAACTGCTTGGGA 49247 28 100.0 32 ............................ TTGAGACCGCCGACCCGGTCGACGCGCGAAGC 49187 28 100.0 32 ............................ TGGTGTTCGGTTTCGCCGGCCTGTCAGGTGGC 49127 28 100.0 32 ............................ AATTGGCTCCTGACCCGCGCGGGTCTCGAACA 49067 28 100.0 32 ............................ CATTCGTCAGCGGTCCTCGGCGGCGGCGCCTG 49007 28 100.0 32 ............................ TCGATAATCTCGGTCGTGTCACCCTCGCCGGT 48947 28 100.0 32 ............................ AGCAAGGCGCAGCAGCAGACCTTCAAGGCGCT 48887 28 100.0 32 ............................ AGGCGTCACCGCGAGCCCGCCACCGGTCACAA 48827 28 100.0 32 ............................ TGAAGTGCGGGCTCTGGGTGCCTGCTGGTGAG 48767 28 100.0 32 ............................ TATGCGGCGGATCTCGGTCAGCGTGATGTCGA 48707 28 100.0 32 ............................ TTGAGACCGCCGCCCCGGTCGACGCGCGCAGC 48647 28 100.0 32 ............................ TCGCCGTAGCCGGTCACCAGGCTCACCGGTTT 48587 28 100.0 32 ............................ GTGATCGAGGCCCGGAGGCGGGTCAAGAGACG 48527 28 100.0 32 ............................ GCGTCCGCCCCGTCCGCAGATTGCCTATTCAA 48467 28 96.4 32 .............C.............. ATGTCGCCGTCCTCCCAGTCATCGAGGTCCAC 48407 28 85.7 0 ....................T.G.CC.. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.0 32 GTTCACTGCCGTATAGGCAGCTCAGAAA # Left flank : GTGAGTACGAAGATCGGGGAGGATTCTGGGCCGGTGTTGATCTGTGGCACAAGGAGGCCGAACGGTATTCGAATCTCTACTGTAAGGGGATGCGAGTGCTGGTTATTGGGCGCATGATTTTGGAAAAATGGGAAGACGACAGTGGGAACGAATGTCGGGCGATGAAGGTGCAGGCCAGTCGTGTGGGGATATTGCCTCACCGTATTGATCGGATCGTGATGATGGTTCAGGAACGGCCTGTGCCTGAAGTGGATGAGCAGATGGTTATTCGGCTATCTGCCAATGACGGAACGTAGCAACCGTTCAACTACCCACGCTTGGTGGATCTGCTTCTGGTGTTGTATGAGGTGTGCAGTTGCCCTTTTTCTGAACCCTCTTTTCCGGCGGAAATTTGTGGCTTTTAAAATCAAGCGCTTACGAAAGGGCGAAAAAAGAGGGTTAAACTGAAGGGAACAGCGCTTTTGCCTTTATGGACAAGGCCTTACCGGGAAAAGCGTCTA # Right flank : GTCTTCGACGTTCATTTCGAATGCGTTAACGGGTGCACGCCTGAACAGGTATCCCTCTGACTGCAATGTGGTGACGTTGCATTTGGTTTCACGGAGCCTGTTGGCACATTGCCAGCCTTTCCGTTATAACCTCTGCATGATGATTGAATGGATGCAGTCGGTCGCAGGCTTATGGAAGAAATCCGCTCCTCGGATCTCAAGACGATCCTTCACTCCAAACGCGCCAATATCTATTACTTGCAGCACTGCCGAGTATTGGTCAACGGCGGTCGCGTCGAGTACGTGACGGACGCAGGTAAGCAGTCGCTCTACTGGAACATCCCGATCGCTAATACCACAACAGTATTGCTGGGCACCGGCACATCAGTGACTCAGGCCGCCATGCGTGAGCTGGCCCGGGCGGGCGTTCTGGTCGGTTTCTGTGGCGGAGGGGGAACGCCATTATTCAGTGCAAATGAGATCGACATTGAGGTGGCTTGGTTCTCGCCGCAGAGTGAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //