Array 1 426363-425056 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021420.1 Akkermansia muciniphila strain YL44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 426362 33 100.0 34 ................................. TTAATTTGCTGAGCACGACGGAGGTGACTTCTTA 426295 33 100.0 34 ................................. ACTTCCTGGGACAGGCAGATCACGGGGATGCTCG 426228 33 100.0 35 ................................. GATTTTTTGTGTAACAATGTAATTGTGGTCATCAT 426160 33 100.0 34 ................................. ATCACCACACCAACTTTCTATGCCGGATTAACTC 426093 33 100.0 34 ................................. GTTGTTGCGGTCGGCCACATCATCCCCGGCATCC 426026 33 100.0 35 ................................. AGGGGACGGAGCGTTGTTCCACGGAGTTTCCCCTT 425958 33 100.0 34 ................................. TTGGACAGGCTCATGTCAATAGTCCTCCATGTTG 425891 33 100.0 34 ................................. TTGAGGGTTTGAATGTTGATTTTGGCGGGGATCC 425824 33 100.0 34 ................................. TTCTCGGATATATCGTCTTTGATACCCGCACACA 425757 33 100.0 34 ................................. CACGGCATTTGCCGCATAATGTAATCTTTGCACA 425690 33 100.0 34 ................................. GGCTTGGAGCCTCCGCTTCCCATTATCGCCGATG 425623 33 100.0 34 ................................. CCTCTCTTTTTAGGCGGAAAGGCCACGAACAGCG 425556 33 100.0 34 ................................. TCCTACCGTATGGAGACAGTGGAATCGGAATCCG 425489 33 100.0 34 ................................. CGTGTCCTGGTAGGTCACCGGAAGCGTGTCAAAA 425422 33 100.0 34 ................................. CGAGTATGCCTCCACCAGCGCCCGCGAAAAGATG 425355 33 100.0 34 ................................. TCGAATGTCCGGGACACAGCCCGCAACGGATATG 425288 33 100.0 33 ................................. TCTTTGTTGAGCGGGTACCATGAGCCTGTGCTG 425222 33 100.0 34 ................................. CTCGAACGTGCATCCGTAATTGGCAAGGCACCAG 425155 33 100.0 34 ................................. CAGGTGCGGGTGCAGAAAGATACGGAGGGCGCCG 425088 33 97.0 0 ..........................C...... | ========== ====== ====== ====== ================================= =================================== ================== 20 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATTAGGAATAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTTCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGCA # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTTCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGTTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATATGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 435319-434834 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP021420.1 Akkermansia muciniphila strain YL44 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 435318 31 100.0 34 ............................... TTACAAAACTGTTTTATGGATACAAAAATATATA 435253 31 100.0 34 ............................... CTTTACAACCCTTATAGGTTATTATTTCCCTATG 435188 31 100.0 33 ............................... GGCATTCAGGCAGTCGGACGGTTCAACTCCGGA 435124 31 100.0 34 ............................... GGCTAAGTGTTGAGGGTTCCCGTCAACCAGCCGG 435059 31 100.0 34 ............................... TGGAGGGAGTGAGTATGAAAGGGAAGGATTTGAG 434994 31 100.0 34 ............................... GACCAACAACGTACCCGGCACGTGGTGCATCGGC 434929 31 100.0 34 ............................... CTTTTTCCGGCTCCTTTCCGCAATGCGCATCAGG 434864 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ================================== ================== 8 31 98.8 34 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : CGCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCTATCCCGGGGCTCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCCGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGG # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //