Array 1 469294-479015 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJTA01000002.1 Clostridium perfringens strain FC2 scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 469294 29 100.0 36 ............................. TTAAAAATGTTACATCACGGTATGTTAGGATTTGGG 469359 29 100.0 37 ............................. CAAAGATGGAAACATATGTTAATGACACACTTAAACG 469425 29 100.0 37 ............................. ATGTTTAAAAGCCCTATTATATACCTTGCATAAGTAT 469491 29 100.0 37 ............................. GTTGCAAGAACAACTTATGGAATTGATGGAACTGAAA 469557 29 100.0 37 ............................. CCTTTTGGTGTCCACTTAACAGCTCCGACATCACCTT 469623 29 100.0 37 ............................. TTATAAATATCTTGGTTCATATCTTATAGTCACATCA 469689 29 100.0 36 ............................. ATTATCGATTAAACTTTTCCAAAATTCTTTATTATT 469754 29 100.0 37 ............................. GTTAAATTTCCTACTCCCTTTGTAGTTAAATCGGCTG 469820 29 100.0 36 ............................. TCAAGTGTTTCTAATTCTCCACTTTTTATTAACTTT 469885 29 100.0 36 ............................. ACACGTAAAATTGTTGTAAATATTTCATAATATTCA 469950 29 100.0 37 ............................. CTTGAATTATTAATCTACTCATTTTTACCCTCCTAAG 470016 29 100.0 36 ............................. TATTTGGTATGGATTTTGGTTACACGCATGATCCTA 470081 29 100.0 36 ............................. CGTATAATTTCATATTGGAATTAATACTCATCTTCT 470146 29 100.0 36 ............................. GCTCTATTATATGTCCATCACTTTTTTTAGCTACAA 470211 29 100.0 37 ............................. GGGCTTTCTAATACTATATTAAATTTAAGTTTAGATA 470277 29 100.0 36 ............................. TTTATAAAGGCTATAGATTTTAGTGAGGAATTTGAC 470342 29 100.0 36 ............................. AAGGATGATTTGCAACTATTGTTTTGTTGCTTATAA 470407 29 100.0 37 ............................. CATTTGAGTTAATGGAATACGTACTACCACAGAGTAG 470473 29 100.0 37 ............................. CTAGCATTTTTACTCCCCCTATTTTATTTCCCTTATA 470539 29 100.0 35 ............................. GTAATTCAAGAAGTAAAGGAGAATGAAGAAATGAA 470603 29 100.0 37 ............................. ATTAGGGTATCTCTTTTTATGTGTGTAGGTATAGATT 470669 29 100.0 36 ............................. GATGTAAAGTGTGTTCTTAATATGGAATACTTGGAG 470734 29 100.0 36 ............................. AGTGGTAAATATCTAATAGAGGATAGTATAATTGTT 470799 29 100.0 36 ............................. TCGTAACGGCTAATGCTAGAGTTGAAATCCAAACAA 470864 29 100.0 36 ............................. GAAACTAAATATTTATTCAATCAAATTAATTTATTC 470929 29 100.0 36 ............................. ATCATATGAACGCTTCTAAAAAGCATAATGCTTACG 470994 29 100.0 36 ............................. ATATTTTATGGTAGTAATTTAAACTACAGAATAAAT 471059 29 100.0 37 ............................. TTATGTTATAGATACTGAAACGTGTCGTACTCAAAAG 471125 29 100.0 37 ............................. TAGACTATAAAAAGAGAATGTGTATTATAAATTCAAA 471191 29 100.0 36 ............................. GGGTATGTGGATACTATTTAGAAGTTTTTATACCAT 471256 29 100.0 37 ............................. CATTGTGTTATAGTTGTGTTAATGAATTGTGAACTGA 471322 29 100.0 37 ............................. GTACTAGACCAAAGCAAAGGTGTAATAGATGAAAGTA 471388 29 100.0 36 ............................. GATGAAATAGAAGGTATCTTTAAAGCTTCACTTCTT 471453 29 100.0 37 ............................. CAGGACAAAATAGAAATTAAAAGCTTTAAGGAAAAAG 471519 29 100.0 37 ............................. CTTACACACTCATATTATAATGTCTTTTAAGACAGTA 471585 29 100.0 36 ............................. TTATATATGGGAAAATATTATCATTAGCATCAGCAA 471650 29 100.0 36 ............................. TGTATTGGACAGTAATTTTCTTATTTTTTAATATAG 471715 29 100.0 37 ............................. GGAACAATGACAATAGAGCAAGTTGGTCAGCGTATAG 471781 29 100.0 37 ............................. TAACCACTTATACCATATTGACCAATAGTAGTATAAG 471847 29 100.0 36 ............................. CTTCTGCATCTTCTATAAGTCGCCCTAAAGCACTTG 471912 29 100.0 37 ............................. TAGAAGGTTATTTTATAAAAAAACATTTGCTTGAACT 471978 29 100.0 37 ............................. GGATGCAATACATTTGGGAAACTGTCTTAAAGCGTGG 472044 29 100.0 36 ............................. CAATGGGATGCTTTAGACAATTGGGAAACTGTATGG 472109 29 100.0 37 ............................. AGAATGGAACTTTAAAGAAAATATTCATACAGGGAGA 472175 29 100.0 37 ............................. TAAAAATTATAAAGAGAGCTATATTGGGGCTTATAAA 472241 29 100.0 37 ............................. GGATATAACTGACGTTATAATCGTTAATATAAAGGAC 472307 29 100.0 36 ............................. GTTTTTGCAGGTGATAATTTTCTCTTTACTATAGCA 472372 29 100.0 37 ............................. AATGAGACCAGGCAAGCGGAGCATTTAGTTCGTAACT 472438 29 100.0 36 ............................. AAGGAAATTATCGTACATCATTCGGAGCATAGCACC 472503 29 100.0 36 ............................. GGATACGAATGGGAGGAAAAGATATTCAAGGCTCTT 472568 29 100.0 37 ............................. AAGGCAGATAATGGGTTCATAGGATTAATACCCATAA 472634 29 100.0 36 ............................. ATTTTTATACGCCATTTCTAACACGAAAGTTATTTG 472699 29 100.0 38 ............................. ACGGATATCTGATTTAGTAAACAGATGTGTCTCAACTA 472766 29 100.0 36 ............................. AGGGAAAAATGTTGAAGGTAAAAAACAACGTAAGAA 472831 29 100.0 37 ............................. GTGCTATTTCCTGTGTTACCGCTATAAGCGATAATAT 472897 29 100.0 37 ............................. ATGATGATGTTACAAATGAGTAAAATAACTGACATGA 472963 29 100.0 36 ............................. TCTTTAAATGGTGTGGATGAAATTTATAATGTTCTT 473028 29 100.0 36 ............................. AGTGAAGGTCAAAAGGAAGGATTAGAAGTTATATTA 473093 29 100.0 37 ............................. TACTATTTCTAAAATAAAAAGATAATTTTATTTTAAA 473159 29 100.0 37 ............................. TAGTTTAAAGTTTCTAAAACTCTTACTTTTAAGCTCA 473225 29 100.0 36 ............................. GCTGAAATCTTTATTTCACCAGTATTTAATGAATAA 473290 29 100.0 36 ............................. TTTAATAGCAGGATCTATCACAGCAGATAAGATACA 473355 29 100.0 38 ............................. CTCTATAAATGGACTATATGATTTTATAGTAAATGATT 473422 29 100.0 36 ............................. TTATTATATCAGTCATAATTTCATCTCCTTTTCATT 473487 29 100.0 37 ............................. TTTTAAAAATTATTTCTTATTTTGTTAACTGTATTGA 473553 29 100.0 37 ............................. AATGATAGATTTAATATCTCTCTCAATAGGAGAAGTA 473619 29 100.0 36 ............................. CCTAATATACATACATTAAGATTTTTTCTTGTCTTT 473684 29 100.0 36 ............................. ATAGTTAATTTTGTATTATTTTTTATTGTATATAAT 473749 29 100.0 36 ............................. TTTTTAATTTCTTTATCACTAAATTCCCTTTTTAAA 473814 29 100.0 37 ............................. AAAAAAATTATTTATGCTGAAAAATCAGTTAAAAATC 473880 29 100.0 37 ............................. ACCTTTTATAAATAATTTTAATAGTGCTTCCATGTTC 473946 29 100.0 37 ............................. GGAAGTAAAACTACAGGAACAATAAGACCTTATGGAT 474012 29 100.0 36 ............................. ATTTGGAAAGAGATTCAGAGGATGAAGAATGTGTTG 474077 29 100.0 36 ............................. TTAGGATCTTTAAGCATGTATTTTGCGATTCCTTCA 474142 29 100.0 36 ............................. ACAAATTCATCTATAAATTTTTCTTTATTTATATTT 474207 29 100.0 37 ............................. GCATTTCTAAATTCCATAGCATACTTGAATACACTAT 474273 29 100.0 37 ............................. TATCTATATCTGTTGATACTAAACTTAAAGCTTCTTC 474339 29 100.0 36 ............................. CAAAAATTTTCAGGCAAATTCAAAGAAGGATAAGAA 474404 29 100.0 36 ............................. ATGCCAGTTGTTAATAAAGTTTCTGATGTTGTTAAG 474469 29 100.0 37 ............................. GTAGTTGCTCCAGTAGTTGCTGAATATGGTTTTGAGA 474535 29 100.0 36 ............................. TTGTCATATTGTTTTTGGTGGATTAACTCTTTTATT 474600 29 100.0 36 ............................. ATTACTACTGCTGTTACTAGCAATCTTACAACACTT 474665 29 100.0 37 ............................. GTAAAACAACTTTAGAATTTGTATGTTATGATCCGAC 474731 29 100.0 37 ............................. TTTATTTGTGCTAAATGTACTTTTAAATTTATAGGTG 474797 29 100.0 36 ............................. TAAGAACTATATTTCTTTTTACTAGTTTTCTGCACA 474862 29 100.0 36 ............................. TCCCCTACAAGTAAAGTTAATAGTAAATTCTCCCTT 474927 29 100.0 36 ............................. ATAAAAAAAGTTTCATCTAATAAAGCGATAGTTTTG 474992 29 100.0 36 ............................. TTCGCCAGTTTTGTTACGGCATATGCTAGAGTATAT 475057 29 100.0 37 ............................. CACATATACTGTTAATAATTTCTGTTCTAATAACACC 475123 29 100.0 36 ............................. TAATAATGTTCTCCTTCTTCACAATTATCTGGATCT 475188 29 100.0 37 ............................. GTACAACATAAAAACTTTGAATTAAACAATGGTGTGG 475254 29 100.0 36 ............................. TATATCATTTTTACCACTCCTTAATGACTACAAGTT 475319 29 100.0 36 ............................. TATGTTGACCCCTCATATCAGAACCTTTTTAACTTT 475384 29 100.0 37 ............................. CAAAACCACTTTTATAATACTTTTAGGGTTAACCCCT 475450 29 100.0 37 ............................. GAAATTGAATAAATCTAATGTCATTCTAATGGTGTAG 475516 29 100.0 37 ............................. ACAAATCTTTAAAAAAAAATCAAAATTAATAGAAGCA 475582 29 100.0 36 ............................. AGAAGACGGAGATCTGGAAGAAGTGGAAGAGATTAA 475647 29 100.0 37 ............................. GAGTATAGAGCTAGGGTTCTAAAGAGCCATATGAGTT 475713 29 100.0 37 ............................. AATTCATTAAACATAGAGTTCATATAGGTTGTTGTCT 475779 29 100.0 33 ............................. TGAAACTTTGGGAGAAAGAGTTTAATAAATAGT 475841 29 100.0 36 ............................. AGGTTTAAATAGGAAAGTTAGAGAAGTTAAATTTTA 475906 29 100.0 36 ............................. TAAAAAGAATTGAGGATAGTTTTTATCGCCGAATAT 475971 29 100.0 36 ............................. TTGAGTGTTGATAATTATAATAGTGTTCTAAAAATC 476036 29 100.0 36 ............................. AAATTATTTGGATGCACTTCTACACCCATTTTCTTT 476101 29 100.0 36 ............................. TTCAAATGATAGGATTTGGACAAGCAAAAAAAGAAA 476166 29 100.0 37 ............................. AAGAGTAAAGAGTATGAATTACAAATGATTAGATTAG 476232 29 100.0 36 ............................. TATTCCTTATATCATTCAATTCATCATATACAGTTG 476297 29 100.0 37 ............................. AAATTTAGAAAACTTAGATAACAAAATGGACAGCATA 476363 29 100.0 37 ............................. TCGGCTTCTTCAAAGCCCTCAAGAGTCTTTATTGTAA 476429 29 100.0 36 ............................. ATACTTGTTCCGTCTGATGTTAAAAACGTTGTACCA 476494 29 100.0 36 ............................. ATCTTGTAAAAAATCTTTGTAAATCATTAAAAGCTA 476559 29 100.0 37 ............................. TTCGGATATTCAATAGAAGAATTATTTTTGGAGGACT 476625 29 100.0 36 ............................. CATACATTTAAATCTAAAATACAAGTATCAAATTGA 476690 29 100.0 37 ............................. TATTGAGATAATAAAATATCTTTTTTATTTTCTTTAT 476756 29 100.0 37 ............................. CTTAAATTACCGTTATAATCAAAGCTACTTGCAATAG 476822 29 100.0 37 ............................. CTTAAATTACCGTTATAATCAAAGCTACTTGCAATAG 476888 29 100.0 36 ............................. TCTAATCAAGTAATTTATATTTGACTTGAGAGGAGG 476953 29 100.0 37 ............................. TTAAGAATTACTAGAACACTAACAAGTAGTACAGATG 477019 29 100.0 37 ............................. GGAGATAGAAAGATATTAACTATAGGCAAAATGATTG 477085 29 100.0 36 ............................. TAGTACAAACTGATAATGTTTATTATGGATTGGAAG 477150 29 100.0 37 ............................. TTAGGAAGACAGAAATTACAAAGCGATAAATTAGCAG 477216 29 100.0 38 ............................. GAACAATCTGTACCAGCATCAGAACCTAATGGTGGGTA 477283 29 100.0 36 ............................. TAATGAATAGCTTTATTACCAGTTGCTACTTGTTGC 477348 29 100.0 37 ............................. TTGCTATGACAATGCAGTATATTATTTTCTTTATACA 477414 29 100.0 36 ............................. ATTTCTAGACTACTGGAATGGTACTTACAAAATGAT 477479 29 100.0 36 ............................. GTTAAAAATGCTATGTTAAAAGCTAATATAAATTTA 477544 29 100.0 37 ............................. TGTGTCTTTGCATGGGATGAAGTGCAAAATGAGTTTG 477610 29 100.0 37 ............................. GGGTTTGAAACTTCTGCTGCTGCTACAGAAGTAGCAA 477676 29 100.0 36 ............................. TTATATTTGTGAAAAGAATGTACAATCAATGGATGC 477741 29 100.0 37 ............................. GCGTATGATGGTTGTCTTGTAGAAATGCGAGATAAAG 477807 29 100.0 37 ............................. CCACATCACTCATTTGGTAAAGTTAATAAGATATTAA 477873 29 100.0 36 ............................. GGAACACATTACACTATTACTTAATCCAAAACTAAT 477938 29 100.0 37 ............................. TACTAAACCTATAACATTGTAGCATTTATATATAATT 478004 29 100.0 36 ............................. ACATATTTTGCTAAGTTAGGAGCACCGCCAGTAAGT 478069 29 100.0 36 ............................. TCTAAGCATTTTTTTATGAGAATTATCTATATTTAA 478134 29 100.0 36 ............................. TATACCCATTCATTACTTTCTTTAGACTTTCCTCTA 478199 29 100.0 36 ............................. TACATTACTATAACTATCTACACAACCAGGAACACA 478264 29 100.0 36 ............................. TTATTTCCTTTTGCTCTGTAGATCACTTTGTAATTT 478329 29 100.0 37 ............................. CTCTATTCTTCTGCTTCTTCTGGCATCTTGGTAAATA 478395 29 100.0 38 ............................. CATGCAAAGCGTTAAGGCTAATACAAAGGATACAGTAG 478462 29 100.0 36 ............................. ACTTTAGAAGTATTAAAATCTTTAGCAAATGCATTA 478527 29 100.0 37 ............................. AAGATTGAAGGTGATAACATTGATTAAGAAACTAATT 478593 29 100.0 37 ............................. ATTGGTAAATTACGAACTTTACCATCCGGTGGAGAAG 478659 29 100.0 36 ............................. GATTCAATTTGATTAGCTTGTATGTGTTGAGATTCT 478724 29 100.0 37 ............................. ATATACAACAAATTCAATTAGACAACAATGAAGAAAC 478790 29 96.6 37 .......................T..... TTATAAATTCCCAAACCTCTTTCTCATTACCTAATAC 478856 29 100.0 36 ............................. GGTTTTAATTCAGCTTCACTAACTTCTATACCTTCT 478921 29 96.6 37 .......C..................... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 478987 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ====================================== ================== 149 29 99.8 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACAAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGACTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTAAAATTTGGG # Right flank : AAAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGAACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAATATATATGGTAACATTAAGCTTATTAAGCTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTAAATCTAATAGCTCACTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //