Array 1 165543-163985 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCJ01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 07-0264 NODE_1_length_612567_cov_4.0824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 165542 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 165481 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 165420 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 165359 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 165298 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 165237 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 165176 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 165115 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 165054 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 164993 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 164931 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 164869 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 164808 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 164747 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 164686 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 164625 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 164564 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 164503 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 164442 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 164381 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 164320 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 164259 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 164198 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 164137 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 164075 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164014 29 96.6 0 A............................ | A [163987] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 175284-174277 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZCJ01000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 07-0264 NODE_1_length_612567_cov_4.0824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 175283 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 175222 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 175161 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 175100 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 175038 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 174976 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 174915 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 174854 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 174793 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 174732 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 174671 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 174610 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 174548 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 174487 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 174426 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 174365 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 174304 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //