Array 1 98158-97031 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJQ01000013.1 Escherichia coli strain MOD1-EC6231 MOD1-EC6231_13_length_123540_cov_28.8916, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 98157 29 100.0 32 ............................. CTTGCTGCGACTGCCTGGTACAGCATCTATGA 98096 29 100.0 32 ............................. CAGTTACGGGATGCCTGGCGTTATTCGCCCGG 98035 29 96.6 32 ............................T ATTATGGTTGATCTGTCTGTACAGAATGAGGC 97974 29 100.0 32 ............................. CAATGTTTTATTTTCGAATAGCACTTTTTGCA 97913 29 100.0 32 ............................. TATCCAAATGATAAATAGTGACTCATAAAAAC 97852 29 100.0 32 ............................. GGATCAAATCTTTTGAGAGCAATTAAGGGGGA 97791 29 100.0 32 ............................. TTTATGTGGAGTATCAGTGCCTGGGTGGAAAG 97730 29 100.0 32 ............................. TGGGGCTGAGCATGGCTAAACAACCGAGGCGC 97669 29 100.0 32 ............................. GTCAACTGGCACCACAGGATGATGGCGGCGAA 97608 29 96.6 32 ............C................ CAGGCGCTCGACGCGGCACGCAGTCGGGCACA 97547 29 96.6 32 ............C................ CAGGTCGACCGACTGGAGGCGGAGATTGTCGG 97486 29 96.6 32 ............C................ TGTTGTTTTTCTGCCGGATTAACGCGGTGCGA 97425 29 96.6 32 ............C................ TTTACGTGTTATCGCGCACCGGCGACGGTGTG 97364 29 96.6 32 ............C................ GTGATGAGGAAAAGCTAATAGAATGGCGACGC 97303 29 96.6 32 ............C................ GTCCACGGTTCGACGCCTACCGCCGCAGCTAT 97242 29 96.6 32 ............C................ GCCGTCGTGCCGTGTTCACCTTTACGAACCTG 97181 29 96.6 32 ............C................ TTGTCGGGCTTGTTCGGCGCGGGTTGTTAACT 97120 29 96.6 32 ............C................ CCAGCGAAGGACTTGCTCGTGTGGTTAAAGCC 97059 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGCGATAGCGGTCACCGGGGACGCGGCGGATGAGTATGGTCGTCGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCGATCTGGCTCCTGGAAGTGCGTGCCGGTGTTTATGTCGGAGATACGTCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGGTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCTGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCTTTCACCAGCGGTAGCATTATCCGTATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGTTGTTGATTATCAAGCCTGACATCGTGCCAGCTTGTTCCCGCAGGGAAGGCGGCGGTTTTTGCACGTTGCTGATAGCCATCCTTATTCCCAAGATTCCAGTTAGTTGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCAAAAACTTCCGCGTCGTTACAGCACCCGGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 872-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMJQ01000025.1 Escherichia coli strain MOD1-EC6231 MOD1-EC6231_25_length_76524_cov_30.8909, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 871 29 100.0 32 ............................. GTGATGCCGAACACGCCAAATATCTCGCAAGC 810 29 100.0 32 ............................. CGAAAAAAGGCGCGCTCAAAAACGGTGCGATC 749 29 100.0 32 ............................. GGAAAATAAACGCGTTATTCCTTGATGGGTGC 688 29 100.0 32 ............................. AGCAACAGGTATTTCATATGGCCTGCCGTGCT 627 29 100.0 32 ............................. GCCAGCGGCGCTGAGTACGACGACCTGATTAA 566 29 100.0 32 ............................. TGGTGGGATAGCTGCTCTGCCAGCGTGTCGCG 505 29 100.0 32 ............................. TGGGCGCAGCTCATGTATTCCAATGAGGATAT 444 29 100.0 32 ............................. GGATTCTGCACTCTTTGATGTAATGGTACTGC 383 29 100.0 32 ............................. CCATTCTTGTTGTCGTTCATCAAGCGCAGGGG 322 29 96.6 32 .....T....................... GACGATGAGACGCCCTGGTGTGCCGCGTTCGT 261 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 200 29 89.7 0 ...........A........A.......A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAATTGCTTGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTACACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //