Array 1 1355470-1358979 **** Predicted by CRISPRDetect 2.4 *** >NC_010002.1 Delftia acidovorans SPH-1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1355470 28 100.0 32 ............................ TGGAAGAACGCAGGCCATTCGGGGTTGGTCTT 1355530 28 100.0 32 ............................ CAGCAGCCAGCGTGTCCGGGCTTGGCGCTGTT 1355590 28 100.0 32 ............................ ATGAGGCCGTGGAACTGGTGGGCTATGGCGAA 1355650 28 100.0 32 ............................ AACACGCCGAGGCACTCATTGCGTGCGGCCCA 1355710 28 100.0 32 ............................ TATGTCTGCGGCAGACCACGTGCGGCGCCCGG 1355770 28 100.0 32 ............................ AAATCCAAGAGCACGCCAAGACCGCCGCCGCC 1355830 28 100.0 32 ............................ ATACCCAGCAGCGAGCTGACGCCGTACTGCAC 1355890 28 100.0 32 ............................ ATCGCCGATCCCCTTCACGCCCTTGGCGGCTT 1355950 28 100.0 32 ............................ TCAGGGTCGGGGGTGAAATAGGCGACGGTGGC 1356010 28 100.0 32 ............................ ACATAGTCGAAGATCCGCGCCACGCCGCTGGA 1356070 28 100.0 32 ............................ TGGCCCGTGATTCCAACCCCGAGCCTGCCGGC 1356130 28 100.0 32 ............................ GGCCCCGACGTGGTGGCAGGGCGCTGGTACAG 1356190 28 100.0 32 ............................ TTCCAGAAGCAGGCCGAACTGCGCTGCAACAA 1356250 28 100.0 32 ............................ TTGACCTGCTGATATTCGCCGGGCGGACCACA 1356310 28 100.0 32 ............................ TTGTAGTTACCGGAGCCGACCCACGCCACCTC 1356370 28 100.0 32 ............................ TGACGATGTGATCGAGGGCGTGCCCGAGACCA 1356430 28 100.0 32 ............................ TTCATGCGCTCGGCAGGGATTGTCCAAATCGC 1356490 28 100.0 32 ............................ AGACCTGGGGAGCGTCAAAGCCAGATTACGAC 1356550 28 100.0 32 ............................ ATGCCCCAGCCGCAGACCGTGGCCGTGCTGTT 1356610 28 100.0 32 ............................ AGCACAACAACCTCATCACGCCCGAAGTAAAG 1356670 28 100.0 32 ............................ TTTGGGTGTCTGGGCGGGGTATGAGACGGGCG 1356730 28 100.0 32 ............................ TTCAAAGGCTGGGCCGACACCCTGACCGGCTT 1356790 28 100.0 32 ............................ GTCGCGCGGGTCAGAGCCTGGGCCATCGCGCT 1356850 28 100.0 32 ............................ AAGTCCAAAAGCCGGGCGTGCTGATGCGCTGG 1356910 28 100.0 32 ............................ TATCAAACCGTCGAGCTGGGCGATACCGATAG 1356970 28 100.0 32 ............................ AGCTTGCGGCACAGAGCAATGCTCCACTTCTC 1357030 28 100.0 32 ............................ GAGCAGTCACTGCAGACGCTGCAGGATCTGGT 1357090 28 100.0 32 ............................ TGTAGCGCGCGCGGACTTCCGCTGGCCCGCAC 1357150 28 100.0 32 ............................ CACTGCAGGAATTGCGGTGCAGAGATTTCGGA 1357210 28 100.0 32 ............................ TCTCTCACTCGTTGTTTTGGTTTTCATGCAGC 1357270 28 100.0 32 ............................ ACGCCCGAGCCGCTGGGCTTGAAGATGGTGGA 1357330 28 100.0 32 ............................ AATTCCTGGGAGGCCGCTGACAAGGCCTACCA 1357390 28 100.0 32 ............................ TTGCCGTACTCGACCACCGCCACCATGGCCAG 1357450 28 100.0 32 ............................ AACAAGAACTGCCCGGAGGGCAACAGAACCAT 1357510 28 100.0 32 ............................ GCCGTCATGGCCCACATCGCCAACCGCTATTC 1357570 28 100.0 32 ............................ GACTGCTACCCCTGGACGCGCTGATGGCCGGG 1357630 28 100.0 32 ............................ TGAAAGCCCGCCTCGAATAGCTGGCTCGTGCC 1357690 28 96.4 33 ......A..................... ATGCAACACGCCACCACCGCCATGCGTACCTAT 1357751 28 100.0 32 ............................ AAGGCCACCGGGAGCACGCCATGAACGCCCGC 1357811 28 100.0 32 ............................ TGACCCTGCTGATGGCGCCCCACTCCCTGAAC 1357871 28 100.0 32 ............................ TTTCGTGATGGGCCCTGGGCTTGCCAGGGCGG 1357931 28 100.0 32 ............................ ACGCAGGCACGCGCGCCCAGTCCTCGACCTTG 1357991 28 100.0 32 ............................ AGTGCTGCGTGAAGGGATCGTGGGAGCGACTT 1358051 28 100.0 32 ............................ CGAACGTTCGTCTGCGGATGTTGGTGCGCCTC 1358111 28 100.0 32 ............................ GCGAGTACGCCGCCCAGGCCTTGGGCCAGCCC 1358171 28 100.0 33 ............................ TGGACCAGATCAGCGAACCGCCGGCCCCCTGAC 1358232 28 96.4 32 ...........................G CGCCACCCTGTACAGAGTGCGCGGAGCATACC 1358292 28 100.0 32 ............................ TTCATGGCCCGGATGGCGTCAGCAGCGGCATC 1358352 28 100.0 32 ............................ ATCAAGGCCGTCATCGCCCTGGCCCATAGAGC 1358412 28 96.4 32 ............A............... TGCGAACGTTCCCCTCTGGAAGGAAGCCCCAT 1358472 28 96.4 32 ............A............... ATGCAGTGGCCAGGGCGACAGTGCGCCCGGCC 1358532 28 96.4 32 ............A............... GCCTGGCCGGTGCCGTGCGCGCTGGTCACGGC 1358592 28 96.4 32 ............A............... TGATCCGCGACGTGATGGACGTCACCCTGTTC 1358652 28 96.4 32 ............A............... AATGCCCGATCCCAACAACAGCGACGCTGAAA 1358712 28 96.4 32 ............A............... ATGCCCCCGCCTTCGATCTCGATGCCCATCTG 1358772 28 96.4 32 ............A............... ACGCCGATGCTGCCCACGCTGACGACAGGGCC 1358832 28 96.4 32 ............A............... TGATTCAGGGTTGCGCTGCTCATGCAGCTGTC 1358892 28 96.4 32 ............A............... TGATCCCATCCAGGGGCAGAGCGCTACTAGCC 1358952 28 92.9 0 ............A..............T | ========== ====== ====== ====== ============================ ================================= ================== 59 28 99.2 32 GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Left flank : CCGCGCTGCGCGGCCTGATGGAACAGCCCTGGCTGCAGGGCATGCGCGATCACGTGCACTGCACGCCGCCAGCTTTGGTGCCAGAGGGCGCCGTGCCCTGCCTGGTGCAGCGCCGGCAATTCAAGACCAGCCCCGACCGCCTGCGCCGCCGCCGCATGCGGCGCAAGGGAGAAACCGCAGAACAGGCTGCGGCCGCCATCCCCGACAGCGTGGAGCGCACCCCGGACCTGCCCTACGTTCAACTGCGCAGCGCCAGCACCGGCCAGCCGTTTTGCCTGTTCGTGGAGCAGAAAGCGGTGCAGGGAACGGCGGGCCAGGAAGGCTTCAACACCTACGGGCTGAGCCTGGGAACTGCTGTTCCCTGGTTCTGACCCTTTTTCTGGCGGCCTGCAGACTGCCTTGTAAATCAACAGCTTGGCAGATACCCCGCAATTTGGGGTGTTCGCCAGCTGGAGGTGATAGCTCTTTCAAAATCAATGGATTGGGGAATTTTTTGCCTA # Right flank : TCCCTCAACTTTGACGACCGAGTAGTTTTTGTAGATCGCGGCGTATGGGCTGCATCAAAAATGCTCTCTGCCTAGAGTGGCAGAAGCCGCTCTGTACTCGGTCGGATCTTGCCTTGCATTGCCCGGTACGGCCCAGTCCATGGAGCCGCGCTGCTGTTTCCGCAGCTTTTTCCGCATCCGAGACCTTCTGAACCCTCATTTCATTCCCTGTTCCACAAATTCCACGAAACTCGCACCTTCATCGAACACCCTCAGGGCCAGCGACAGGCGCTTGCCGTAGACAGAGTCGGGCCGGCTGAAGGCTTGCACTGCCAGTGCAACAGCAGAGCGTGCCCGATACCACTCGCTGTCGAACTCGCTGGCACAGCCCAGCTTCATGTCCTTCATTCGCCGGATGTGATGCAGGGCGAGTTCTGCGACCAGTTCTACTTCAACATCGGTTTCGTCCCGTACGTTATCCGTGTCGGTGGTAGCAATCAGGACCTCCAGGCGGTGCTCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //