Array 1 886-735 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214198.1 Actinopolyspora erythraea strain YIM 90600 Scaffold25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 885 29 100.0 32 ............................. GCACCACCAACCGGACGGCAGCCCCAGCCTAC 824 29 100.0 32 ............................. GAGACCGCGTGAGCACGTGTGCGCGCGAGCCC 763 29 89.7 0 .........................C.GT | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTGCTCTCCACGTGCGTGGAGGTGGACCG # Left flank : GCGGCGGTTGTAACGTCGCAGGTCGCAGAG # Right flank : CACCGGTCTCGACCTCGGCGCCTTCCGCCGCTGGAGTCCGCGACACGAAGCTGGGTGAGGACAGCTCTACCTTCGTACTTCGTGCGTTCGCTATGGGGTTCTTTTCCTGACGCGCTCAAAAGTGACCGCTTCGGTGGCTGACTCCTTCATTTTGATCAGGTTTCCGGACGAGGACACGCTCGCCTTCGTCTGCTTGGAAAGCGACCGTGGCGGGGTTTACCAGGAGAGCCCGGGGATATCGAGCGCTATACCCCCGGTGAGGGAACAGCTCGCGACGTTGGCTCACAGCGAAGATGACGCCCGCGTGCCGCTCGAACAGTTAGTCTCGTCCTGACGGACCACCTCGGGAAGGAGCCAGGGATGACTCCGGACAGTCTTGCGGATGCCGTGTGGCGCAAGTCCACCCGCAGCAACGGCACCGGTGCGTGCGTTGACGTGGGGATCGCGCCTTCCGCCGCTGGAGTTCGCGACACGAAGCTGGGCAATGAAAGCCCCACTCT # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGTGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.20,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 539323-539778 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214174.1 Actinopolyspora erythraea strain YIM 90600 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 539323 29 100.0 32 ............................. ATCGTGCTCGACCGGGTGTTGCTCTGCATATC 539384 29 100.0 32 ............................. CTGGTCGGCCAGTCCTTGAAATTCAGCTCATC 539445 29 100.0 32 ............................. GGCATCCCGAAGAACGCGCTCGTGGGGTGGGC 539506 29 100.0 32 ............................. CTCGTGTTCGAGGAGGAGCGCGAACAGGTTGC 539567 29 100.0 32 ............................. GCCGCGCCCCGGCCGCGATCCGCGCCGCGATC 539628 29 100.0 32 ............................. CCGGTAGTGTTCGATCAGCGCGCGCTGCCCGT 539689 29 93.1 32 ............C.T.............. CGTAGGAGTGGTAACGGCGTTACCACTCGAAA 539750 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGCTCTCCACGGGCGTGGAGGTGGACCG # Left flank : AGCATCTCATGACTACTCCAGACTTCAGTCAGGCTCGCTGGTACAAGTCCGGCCGCAGCAACGGCGGCGGCTCCGCTTGCGTCATGGTGGCGCACGTGCCCACCGCCACCGGTGTCGCCGACAGCAAGCTCGGCGAGGACAGCCCCGTGCTGCCGTTCGGTAAGGCCGCGTGGTCCTCGTTCGTCGAAGCGCTCAAAAGTGACCGCTTCGGTGGCTGATCCGGTTTCATGAAGTCCCGCTCGGTGTGCCATCGGGCGGGACTTTTCGTGTCTCCGGCCGTGCTGGTTTGTCGTGGTGTACGGGGAGTGTGCCGGTGCTCCGGGCAGACAACTGCCCTGCCCTCGCCACGACGTGATCGGGAAGCTCGGTTGCCGAGGCTACGATGGCTCCTGGCCGGAACCGGTCGAGAAGTACTGAGCCCACGGTCGATGTACGGTGTCCCGATGTCGCGGTGGTGTGAAAACGTGCAACGCCGGTTGTAACGTCGCAGGTCGCAGAGG # Right flank : GTGTTTTGTGGAATCTGCCCGGGGCGAGAGGGCGGGTGTCGTGGCTCAGCGCTGAGAACTGGGGCTGGGGGTTTGGGCGTTCGTGCTGTTTCTGCTCAGGGACAGTCGGAGGCCGTTGTTCAGGTGTGAGATCTGGGCCAGTCGGTATCCGTCGGGCAGGTTCGGAAGGTGTGCCGCTTCGTGTGCGCTGTGGGCCTCGATGTGGTCGATCAGGCCGGTGTCGAGGTACGGCTGGGCTGTCACGTGGTCCACGGCCAGTCCGGCGGTTCGGGTTCCGTCGTGGTGGAGCGCGTCGAGGGCGTGGTGCGGATCGTTCGGCAGTGTGAACAGCGGCCTGGAGGTGGGCCACTCGGTGGCGGTGGTCGCGGTTGTGTCGTCGTGGACGAGGGTGTCGATCTCGCGTGGCAGGGCTGTGGCATCGCTTGTCAGGGTTCCTCGCGGGGTGAGGGAACAGCCCCAGGTGAGCACGGGGCGCTGCCGCTCCAGCGCGGCCAGCCACG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 541140-541473 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214174.1 Actinopolyspora erythraea strain YIM 90600 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 541140 29 100.0 32 ............................. TCCTCTTCGTAGTCGCGATTGACGAGCCCGGC 541201 29 100.0 32 ............................. GCCCGGTCCATCTTCATGGCCCTGTCGTTCCC 541262 29 100.0 32 ............................. CGATGCGCGCCAGGCGGGGTTCACGTCATTGG 541323 29 100.0 32 ............................. TCACCAGGTGCGAGTGCGTGACCCCGCCGGAC 541384 29 100.0 32 ............................. TACTTCTCGATGGTGCCGGTGTACGTCCTGGC 541445 29 86.2 0 ...........T.C........C..C... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.7 32 GTGCTCTCCACGTGCGTGGAGGTGGACCG # Left flank : CATGCCGACAGCGCGATCGCGTGACGCATCGCGCGGGCCTCAATCTCAGCCGTGGTGATCGTCATGGAGCTGGTCTAGCAGATCGGCGACAGCCGCGACACCTCGATGATGACGTATCCGGTCGGCCAGAGCTCGAATATCGTCGCGAACTCTGGCCGCTCCGGTTTCTCGCGCGGCTCTGATGTATTCGGAGTGTCAACGGGGCCGCTTGGGGTGGGGTTGGTGTGGAGTCGTCCGGTTGCCCGTGGGATTTCTTCGGTGTGGTTGTGTTCCAGCTGTCCGCCCGCGTCCTCGGGTGCGTGAGTGTCACGCGGCGGCTCTTCGGCTCGCCTCCGCGTGTAGGTAGATCGAGGTGTCGGTTGGGTTCGTTGCCGAGGCTACGATGGCTCCTGTCCTGAGTGGATCGAGAAGTGCCGAGCCCACGGTCGAGGGGTGGTGCCCTGATGTCGTGGTGGTGTGAAAACGTGCAGCGGCGGTTGTAACGTCGCAGGTCGCAGAGG # Right flank : GCGATTGATCAGGAGTGATTCTCCTGTCTCCCGCACCCGCCTTCCCATCACCCGGCCCGCCGCCTCCGAACTCCCCACGGCCGTGCCGGGAGACTTCGGCGACGGCGGGACTCGCGGTGACTCGCGGGTAGGGTTCGGGGCATGTCTACCGCTCTCGTAACCGGCGCCACCGCCGGCATCGGGCGAGCTTTCGCCCGCAGGCTCGCGGCAGAGGGCTACGACCTGGTGCTCGTCGCCCGTGACTCCGAGCGGCTGGCCTCGCTGGCCGAGTTCCTGCGCGACCGCCACGGTACCGCCACCGAGCAGCTGCCCGCCGACCTCACCCGCGAGGAGGAGCTCGCCGGGGTGGAGCGACGCCTCGGCGACGCGACCAGGCCGATCGACCTGCTGGTGAACAACGCCGGGTTCGGCACCTCGGGCGCCTTCTGGGACACCGACCCCGAGACCCTGCGGCAACAGGTGGACCTCAACGTCACCGCGGTGCTGCGACTGACCCGCGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGTGCGTGGAGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 878084-877808 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214174.1 Actinopolyspora erythraea strain YIM 90600 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 878083 30 100.0 31 .............................. CGTCGGTCAGCCGTATGAGCTGTGTGTCCCC 878022 30 93.3 31 ...........A................G. TGACGGTCGGCAGGTCCGCCGCGCCGGCGGA 877961 30 93.3 32 ............................AT CTGATCCGCGGAAATGCGGCCGGGTCGTGACC 877899 30 90.0 31 ............T.............T..G GGCACATGTAGCCCTGCAGCACGAAATGCGC 877838 30 90.0 0 .........................T.G.G | T [877814] ========== ====== ====== ====== ============================== ================================ ================== 5 30 93.3 32 GTAGGCCCCGCGCACGCGGGGATGGACCCA # Left flank : CCGATGAACGCCGCCCACTGAGCGCCGGTCGTGGTGAAGTACCCGGCCGAACGGTCCTTCGTGTCACGCACCGCCGCGCCGTCGTTGAAGCAACCGACCTCGACGCAGTTGCTAACCCGGCCAGAACGGCTCGATTTCCGCCAGTTCGTAGGGTGCGGCTTCATCGCTTACCTCCCGGTCTCCCACCAACCCGGCCATGAACCCAACGGGCCACCCAGGCCCACTCTCACGAACGGTAGCGCACCCATCGCCCTTCCGTAACTCTCCACACCACCCTGCCCCGGAAGACAGATGAAATCGCGACAGCACTCCAAGCACACACAGTCCACACAGGTCATAAACTGACCCGAAGCGCAGCACCCCCGAAACCTTCCGTGCGGCAGCCCGACTACACACCACCGAGCTCACTCACCACGACCCCGAAACACGACCCAGAAAGAGACCAGAACGAAGTGATTCCCACAACGCGCTCCCGCCGCTAGAATCCCAGCGCAGTGAGT # Right flank : CAGGTGGTGGCTGCGAGGACAGCTCGGCGTCGGGGCGAACCGGCGGGAGTGGCACGAAAAAGCGCCTCCGGAACGCATCCGGAGGCGCTGGACCGCTCATCGCGGAATCAGTCGAACCTCTCGGCCTTCACCGCACCGATGAACGCCGCCCACTGAGCACCGGTCGTGGTGAAGTACCCGGCCGAACGATCCTTCGTGTCACGCACCGCCGCTCCGTTCGGGGTACGGCCGACCTCGACGCAGCTCGTACGTTGTCCTGAGCGACTAGACTTCCGCCATCCTTGGGGGTGTATCGTCAATGTCGTTCTCCTTTTCGTCTGCACAGTTGGCGATGAACTCTGCCGACGCCTCGGGGCTCATCGCCACTTCGTGCAGGTTAGTAACCGCATCCTGATACGCCTTTGCGGTACCCGGGTTGTGCAGGGACACCGACGAGTGGTACTGCTCCATGTGCACGATCGGCGTAGCTTTCGGGAACTCGAACAGGATGAACGAGCCCA # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 882376-882226 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214174.1 Actinopolyspora erythraea strain YIM 90600 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 882375 28 100.0 33 ............................ CCGTGAGCGCGGTTTGGATACCAGGGGGATGCC 882314 28 100.0 33 ............................ GTCCCACGACGGCAATGTGTTTGGGAACCCGTT 882253 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GTAGGCCCCGCGCATGCGGGGATGGACC # Left flank : TATCGACGGCACCACCGAAACCGAGGTCACGGTCTCGGACTTCGAAACGACCAACATCCTGCTCGGCAAACTGGGCTACCGCCCGAAGGCGTACCAGGAGAACACGCGAGTGAGGTTCGAGCTCGACGGCGCCGAAGTCACCATCGACGCGTGGCCGCACATACCACCGTACGCTGAGATCGAAGCCGAGAGCACGTCAGCGGTACTCGCCGTCGCCGACCGTCTCGGGTATGCCGAGCAGGACCTCACCGGCGAGAACACGACCAAGATCTACGCTCGGTACGGGATCGACCTCAGCTCGATCAGCTACCTGGCGTTCCCGGAGGACGCCAACGCGAAGCAGTCGTGAACCGCTAGTGCGGCTCCAAGCACACGAACGATGTGCTATTCCCGTGGCGGAGTACCAGAAAGCTCGTCGCTCCAAGCGGACGACCGGAGGAGGTGAGAACGAGGTGGTTCTCACAGCGCTTTCCCGCCGCTAGAATCCCAGCGCAGTGAGT # Right flank : GCCTTTGCTGCCGAGCAGGAACCAGCCGTGGATATAGCCCCCGCGCACGCAGGGGAATCTGTCGCCGCGTGCGCGGGTACTTGACCGGAACCCCACCACCGTTGGCGACGCTCGCCGCGCACGCTGGGCGAGGCAGCGGACCGGCAGCCGGTCAGTCGGGCAGTACCTCGCGCATGACCCGGATCGTGTTGCCGCCCATGATCGCGGCGATGTCGGCCTCGGAATGCCCGCGGTCGCGCAGTTCCTGCGTGATCACCGCGATGTCGCTGGTGTCCCAGCCGACCGTCGTCGACCCGTCGTAGTCGCTGCCCAGCGCGGCCGTCTCGATGCCGCCGACGTCGATGACGTGCTCGATGGCGTCGACGACGGCGGCGGGAGTGGTGTCGCAGACGGCGGCGTCCCAGTATCCGATGCCGACGACTCCGCCGGTGCGCGCCACGCCCCGGATCTCCTCGTCGGTGAGGTTGCGGTTGACGTCGCAGGTGGCCTGCACACCGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 5 1328399-1328123 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214174.1 Actinopolyspora erythraea strain YIM 90600 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1328398 30 96.7 31 .............................C CATCATTAATATCGCTCTTAAATCACTCGGT 1328337 30 100.0 32 .............................. CGTCCGGACTGCACGGATAGTATTCTCCTTGC 1328275 30 93.3 32 ............................GC TCGCTCTCCTGCGCAGCGCCACGGTGCATGGG 1328213 30 90.0 31 A...........................CG CCAACAGCCAGGCCACCTGTTTGGCGTAGCG 1328152 30 80.0 0 ..............G....A..G.C..AC. | ========== ====== ====== ====== ============================== ================================ ================== 5 30 92.0 32 GTAGGCCCCGCGCACGCGGGGATGGACCTA # Left flank : TCGGTGCTCTACCGCCGCGACCTGCGACACGCCCACACCGACGACGAACTCGACGCGCTGGTCCGCGAGATCACCGAGAATCCACCCCGCCCGGTCTGTGAAGTGTTCGTGTGGGACCGACCGTGCCGGTTCGTCCTCGACGGTGAACCGGAATTCCCGGACGCTCGGCTGCTCGTGTCCAGCTCCCCGAACACCGGTTGGGGCGCGCTGAACTACGTAGATCCCCACACTCCACACGGACGTGTGGTCGATTCTTACAACCCCGATGCCGAAGCGAATGCGCCGATCCTGCCCCTCGACCCGGACGGAGCGGACTTCCCCAACTCGGCCGCACTGCCCCTCGAACAAGTCGGCGAAGCCATCACCGAGTACTGCCGGACCGGACAACGCCCCACCCGCGTCGAATGGCAACCCGGCCAGTGGTACTGATCACCCTCCTACCCGGAACAAAAGTGATTCCCACAGCGGGAAAGCACTGTTAAGATCGCAGGTCAACAAGC # Right flank : AAAAGCGTCCCCGGACCGCTTCGGGGACGCTTTCGCCGCTCGCGGAAGCTCAGTCGAACCGGTTGCTCTTCACCCCGTCGATGAACGCCGACCACTGGGTACCGGTGGCAGTGACATCCCCGGCCGTACGGTCCTTGGTGTCGCGCACCGCCACACCGTTCGGGGCGCGGCCGACCTCGACACGGTTGGTGTCCTGCCCGCCGCAGGCGAGCACGCTTCCGTCCGAGCCGGAAGTAGGCCCGAAAGAGGATAGCGCCGCTGATTCTTCCGGAGTCGACGCGGAACTCGCACCCGTTCCGGCGAAAAAGCGGAAGCGGAAGTCGTGTCAAACGATCCACGAAAAACCGTCCGCGAGTCGATCCGCTCCGGCACGGAGATCAGCGGAAAAGTACTCGGTGAGCGATTCGGACGGTCTGACTCGTGGAGCCGAACACGGATTCGAGCCGTGAGACACGAGCGGCCCGCTCCCGGCAGCCGTTGGCGAATAGCTTCAGAAGTCT # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCACGCGGGGATGGACCTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 253099-252886 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214178.1 Actinopolyspora erythraea strain YIM 90600 Scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 253098 28 89.3 33 ..............C.T.......A... GTTGAGGACTTCGAACCTGACGAGATCGTTTTC C [253083] 253036 28 96.4 33 ..............C............. ATAGGCGACGAAATCGATTTTCAGGTCAGGGTC 252975 28 100.0 34 ............................ CACCCGCCCGGGCCGGGCACCGTGCCGACCGTCC 252913 28 89.3 0 ......................G.C..A | ========== ====== ====== ====== ============================ ================================== ================== 4 28 93.8 34 GTAGGCCCCGCGCATGCGGGGATGGACC # Left flank : CCGCGCTCCGCTTGTTCGACTGGCTCCAGTCGTACTCGAAGGCGTACAACTCGGAGCTGGAGTAGCCGCTCATTCTGAACTGCGCCTCAGCGGCGGTCCAGTTGGAGGCGCTGCCCGTGTAGCCGTGCACGAACACCACCGGGTTCGGACCGGCCGCGTTGGCCACCCCGAACGAACCGAACGCCGCCATCGCGACAGTCGCGAGCACAACGCCGAGTATCCTGCGCATGAGTCCTCCTCTGTGATCTCGGACAGGACGCGACGAGTCTGGAACCGACGGCGGGGTGGGCACATCGGTGAAATCACCAGTGTTCGGTTCCGCCGTCCGAACGCGGCGCGAGCGTGGTGCGCCGAGCGTAGGCGGGAAGGCGCTCTCTCAGATGTGGACCGGTTCCCGGTGGTCGGGCCGTTTCGGGGCGTCATCGCCCGGCGCGGCGATTTCTCGCGAAGTCGTCGGGGTCGCGGGAAGCGCGGGAGCCGTGAAGGAGCCCCCCGGGCGA # Right flank : CAAAAAGCGTCCCCGGATCGCTCCGGGGACGCTTTATCTGTTCGCTGGAGTTCAGTCGAACCGCTGGTTCTTCACCGCGTCGATGAACGCGGCCCACTGCTGGCCGGTGGTGGTGAAGTACCCGGCCGAGCGGTCCTTGGTGTCGCGTACCGCCGCGCCGTCGTTGACGCGGCCGACCTCGACGCAGTTGGTTTGATTGCTTGACCGGCTGGATTTGCGCCAGTTGTCAGGGGTCTGCGACAGAGTCACGTCGTACTCTCCAATCGGTTGGCCACGGTGGCGATGTGTCCGATCGAGTCCTCAGGGGTCATCGCCGCACGGTCGAGATGTTCTCTCGCTTCGAGATACGCTGTCGTGTCGTCCTTGTCGCGCAGCGTCGCGCTGGACCTGTGGTGTTCGAGGCGTACCACCGGGGCCGGCCCCGGTGATTTCTCGCGAAATCGTCGGGGTTGCGGAAAACGATGGGAGCTGTGAAGGAGCGCCCCCGGCGAACCGGGGGC # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCCCCGCGCATGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 2 271588-271739 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214178.1 Actinopolyspora erythraea strain YIM 90600 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 271588 30 100.0 31 .............................. GCTCCCGGATTCCCTCCGACCATCAACGGCG 271649 30 96.7 31 ...........................T.. CCCGGCGAGATACACGAGCGGAAGCGTTTCG 271710 30 96.7 0 ..............C............... | ========== ====== ====== ====== ============================== =============================== ================== 3 30 97.8 32 GTCCACCTCCACACGCGTGGAGAGCACCCC # Left flank : AACCACCCCAAGCCGGTGCCGCGCCGGAAATCCTCCCCTCCCCACCCCGGCGCGACACCCCACCCCGGCCGGGGCGGTACCGGTTCTCCACCGCCCCGGCCGGGGGCAAACACCGCACCATCGAACCGAGCAGGACGCATCGTCATGTCCAGAATCTCCCCGGTCACCACGATCCTGCTGCGCGAATGCGCCGGAACCGCCCTCGCCGTAGCCGCCTTCGCCTACAGCGGATGGATCACCACGATCTTGAGCCTGTCATTCCTCACGAAGCTCTTTCACCACAGTGGCTCAGACATCGAACTCCACGCGTTCTTCGGCGCGCTGTCCTGCCTGCTGTGGTGGACGGGAGTCGCCGGAGTGCGCCTCGCCGGATGGCGGCCGAACTGGCCGATTCTCGTCGGCCTGCTCCTCATCGGCGTTCACACGATCGAACTCGCCGTCATGACGGTGATAGTTCACCACCCCGCATGAGACGAAAAAGCTTCCCGAACCGGTTCACA # Right flank : CTCTGCGACCTGCGACGTCACAACCGCCGCCGCACGTTCTCACACCGCCGACACAACGGAAACCCCCACGCACGATTCACGGCTCAACGAGCGGACTACACCAGTACCCACGAACCTGCCACACACCGAGTCACCCCAGCTATCGACCAGACCAGCCTCCATCACAAGCTCACCGGAAACGAGCGGACCGGAGCTTCGGGAAGCACCTCGACCTTCCCGGATGCCGCATTCCCGATTCCCGCGATCACCGTGCTGGAGTTTTCGAACAGCGGCAGAAGATCAGAGAGCGGTGATGCGCAGCACGTCGATCAACAACATCCGCTCCCCCACTGTGTACATGACGATACCGCCGTCGAACGCGGCCTTCCACTGATCACGACCTTTGTCGTAGGTACCGGTGTGTGGCTCGACGCGCAGTTCGTCCAGTCGTTTATCCACCGCCTTCTGAAGCCGTGGCGGGAGATCATTGTAAGTCCGGTCGGCTTGTTCGCCCCAGCGAA # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACCTCCACACGCGTGGAGAGCACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.50,-9.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 535668-536857 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214178.1 Actinopolyspora erythraea strain YIM 90600 Scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 535668 29 100.0 32 ............................. ATTGACAGGAATGTCTTTTGTTAGCATCTCTA 535729 29 96.6 32 ............................T CTTTTATGATAGGTGCAATTCTGGCACTGTGC 535790 29 100.0 32 ............................. GTGGGATCAGCCACCGCCGCAGGCAGCGGGAC 535851 29 100.0 32 ............................. ACCTAGGTGGAATGCATTACACGCCACCGATC 535912 29 96.6 33 ............................A TCGGAGCGCGTGCGCGGAGATGAATATTCGGTA 535974 29 96.6 32 ............................T GGCTCAAATCGAACAAGTCGGTGACGACATTA 536035 29 100.0 32 ............................. GAACCCGGCTACCTCCCGGAGGCTCCCACCGT 536096 29 100.0 32 ............................. CGGGAGGGTTCGCCTATGCCTGACAATCTCAA 536157 29 100.0 32 ............................. ACGGGGTGGACCCGCTGGGGGTGGACCCGGCG 536218 29 96.6 32 ............................G ACGTGTTCCTCGGCCCGGTGTACGTGCCGGAC 536279 29 100.0 32 ............................. CACACACCAGCATCGAGCATCCACAGCAGCCA 536340 29 96.6 32 ............................T GTTGGGTCGGCCCCGCCGACATCGCGATCCCA 536401 29 96.6 32 ............................G GAACGTGTCATGAGCCGCCATTGCGCTCGGAG 536462 29 100.0 32 ............................. CCATTCGGACTCGTTCACCCAGGTGATGCCGT 536523 29 96.6 32 ............................G ATGCTTGATGAGGATGGTAAGGCCCGGTCCAT 536584 29 96.6 32 ............................G TAGGTAAGGGCATATCAGTCCAAGATTTTTTA 536645 29 96.6 32 ............................A AGTTGAACCCTTGCGCGTCGTTGCGCTCGTTC 536706 29 96.6 33 ............................G TACGACCTGGACACCTCCACGATGTTCGTGGAC 536768 29 96.6 32 ............................A TCACGGCTGGTCGACATCATCGAAGCCACCTG 536829 29 79.3 0 .....................T.TCAG.T | ========== ====== ====== ====== ============================= ================================= ================== 20 29 97.1 32 GTGCTCCCCGCAGGCGCGGGGATGATCCC # Left flank : CGAGAAAGACATTACCGACGTAGCAGCTACCACCGGCGCCAAGCCTCAGCGGAATGCGTGAAATCCTTGCAGCTCACCAGGCTGCCTTGCTTACAGTTGCCCCTGAGGTGATGCTTCTGTGATGCCTAATGTCAGGTGGCAACTCATCCTTACTGTCTAGTACTCCACACCGATGCTTGTCACTAGTAATGGCTGGTCGCAGGCGTAAACTCTGCCTCGCAGATGGTGTCGTACAGCACCCTTTTCCATAGACCAGCGGGTCGGAGCACAAGCGCAACTCCACAGGGACTGTCCTGACGCTAAGCTTGACCAACGAACCACTGACTACTTTCGGCCGGAATGTGGTTGTCCTCCGGTTCCGTGGAGGATGTAAGTGGTGTTAAGGAGCGGGTGGTTGTCGGTTGTGTGGTGTGGCGTGGAGGTAGTTTTGGTTGGTGGTTGTTTGACACAAACTGAAGCTATTTTGCTGTGTCGGGCTGTATAGTGCCTGGTCATCAAGT # Right flank : TACAGCACGATGGACAGTCATCCTCAGGGAGGAGAAGTGAAAACCACCCGTCTACGCCGCCATCTTGACGAAGGTGGTCATGAGCTCACCATCAGAATCGCGAACGTCGAGCTCGTAGTCGAGGATCTCGGCGTCACTGCGGCCGTCGCGGCGGACGGCGGCGGTGAGCAGACGCTTGAGGTGATCGGCACTGCCGGGGTCGGCTTCGGCGGTGAAGGTGCGGACGAGTTCACCGAGATAGCGGAGCTCGAAGCTCAACATCCTCGGACCTTCCTCGACTGAGGTGGTCATGGAATCGCTCGTTGGTTCCCAGTTGCGAGGCGGTTCTTCAGGTGACCGGAGGGCTATCTCGTTCGAGTGCTCAGCCTCCGTTGCCAAGGCTTCACATGCCCCGACGGAGACCGTGTTCGGCTGGCCGGCTCCGGTGGTTTCGACGAGCCCCCACGTCTTGAGCAGTGACACGGCGCGGCTGGCGGTGGCCGAGGCGACGTCGTATTCGG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 57712-55420 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214180.1 Actinopolyspora erythraea strain YIM 90600 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 57711 28 100.0 33 ............................ CTCGGAGGGTCCGGTGTCCGGCGCGATCGACGC 57650 28 100.0 33 ............................ TCCGATCCGCGGTCGCGGAGAAACTCGTCATCA 57589 28 100.0 33 ............................ TACGCCGACTCCCGCAGCGCCGTCGCGAACCGG 57528 28 100.0 33 ............................ TGCTCATTCCCTTTCCCTTCAGATCTTGGTCGG 57467 28 100.0 33 ............................ TGTGGTTTCGCTGGTGACCTCGCGCCCCTCGGC 57406 28 100.0 33 ............................ AACGCCGACTACCTGCTCAAACACGCCTCGAAG 57345 28 100.0 33 ............................ ACAGAGTACAAAGACATCATCGGCACCGGATCG 57284 28 100.0 33 ............................ CTTGCGGTTCGGCACGTAGAGCTTCTCGTGGAC 57223 28 100.0 33 ............................ CCCACACCGGTAGAGCTCTCCGAGGACGACAAG 57162 28 100.0 33 ............................ GTCACCACCAGCCGGGAGCGGGACGCTCGCCGT 57101 28 100.0 33 ............................ CTCTGAGGCCCGGCGGTGCGCCACGGTGCGCGC 57040 28 100.0 33 ............................ CTCGGTGCTCGATCCGGTCAGTGCCTTGTCGAG 56979 28 100.0 34 ............................ CTCAGCGGTACGCCCACTTGGCCGATGCTCAGTG 56917 28 100.0 33 ............................ CTACGTGATCGGCATCGACGTGGACAACTATGG 56856 28 100.0 35 ............................ AGATCTCCCGGTATGTAGACGAGCTGGTGTCGATC 56793 28 100.0 33 ............................ CAAGCCGCACTGGTCAGAGAGAACCGTCCCGGG 56732 28 100.0 33 ............................ CTGAGCCAGCATCGTGGCCGCGGACTGGGTGGC 56671 28 100.0 34 ............................ CACTTCGAGTTCCACGACGTTTCGGGCGTAGAGC 56609 28 100.0 33 ............................ TCGCCGGTGACGTCCACCGACTCCGTCGTTGGG 56548 28 100.0 33 ............................ CTGAAAAGACCCCCGTGCTAGCTCCACGGGGGT 56487 28 100.0 33 ............................ CCACACGCGACGGTGACCACGGCCACCGAGGCA 56426 28 100.0 34 ............................ ACCATTGCTCGGGCAACTCTTGCAGCGCGCTTTT 56364 28 100.0 33 ............................ CGGCGAAGTGTCCAAGGACGACGAGTTCCCCCC 56303 28 100.0 35 ............................ ATGGCGACACGACGCCCGCGCCGCCCTCGGTGAAC 56240 28 100.0 33 ............................ CAACGGACTACCGGACATTTTCAAGAACGTAGC 56179 28 100.0 33 ............................ CGCTATGCGTGATCGAGAGCGACAAGGCGCCGC 56118 28 100.0 33 ............................ CGTCGGCCCGAGCCTCGGATCGCTCGCGGTCGC 56057 28 100.0 33 ............................ ACGTTCGGGTGCGGCTCCCACACGTCAGGGCGG 55996 28 100.0 33 ............................ CCTGGGCGGGCTGTCCATGAGCGACGAGAGCAC 55935 28 100.0 33 ............................ CTCAGCGTGCTCCTGGCGATGCGCTGCTTGGCT 55874 28 96.4 33 .........................A.. CCGCCACGGCATCCCCAACAAGTTCGGTCGCGA 55813 28 100.0 33 ............................ CGCGATCGTGGCCGACATCAACGTCGTGATCTC 55752 28 100.0 33 ............................ CAGCGATCCGATCCGCATCACTGCCCCCTGGCC 55691 28 96.4 33 ..........................A. GCTAGAGATCCATTGTGTCTACGTCAAGTCATA 55630 28 100.0 33 ............................ GTTCTTCGGGATCCCGAGCGAAGTGCTGACCGG 55569 28 96.4 33 ........................A... CTCGAGGTGCACTGCTCTCCGTCCGCTGTGCAC 55508 28 100.0 33 ............................ TAGAGTGCGCTGGCTGGGCAGCGGCCTGTACGT 55447 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 38 28 99.7 33 GTTTTCCCCGCGCGAGCGGGGGTGGGTC # Left flank : ATCCGTTATGTGCTGACCGGTGAGGGCACCGCTGACGAAGAGATCAGAACCGGCGTGGTGGACCTGTGGGATCCGGAGGGCAACGTGGCAGCCGGCACCAACTACGCCGACGATGGGAGAGGTGAGTCCTGGTGAGCACATTCGCTGTCATCACCACCAGTGCCATCCCGGACGGAACGCGGGGCGCACTCACGAGATGGATGATCGAGCCGGCTCCGGGTGTCTACGTCGGCACGCTCACCGCCCGAGTACGCGAATATCTCTGGGACGCGGTACGGGAGAGCATCGACGAGCAGTACGGCTGGGTCGCGCTGATTCACGACTCCGACACCGAGCAGGGCTATGCCGTCCGCACCCACGGCACCGGCAACGGTGAGCGTTCCATCGTCGATCTCGACGGGGTCTCACTCGTCTCTTGGCCTGTACTCGAAGGGCAGGGGGAAGAGAGAACCCTGGATCACAAATCAATAACGCATTGGTAGATTACCAGGTCATCACGT # Right flank : CCCGACGTGTCCTACGACGACGCCGCCCGCGCTGTGCGGGACGTACTCACCGAAAAGGTGCACCAGTCCAAGGTGCCCAACTCCGATGTGGTGTTCAGCATCAAGGACGCGATCCTGGACACCAACCGATTCGCCTACGAGATGTTCTCCGCCGGTTCCGAAGGCGTCGGGATGAGCACGGAGCAGCTGTGCCAGGTGGTGTACGACGAGGTCGCCAACGGGCTCTGCTCGGGCTACGAGCAGGCCGCCGACGCCATCGCCCTGCGCGTCGGACAGCGCATCATCGAAGGTGGTGGTGCGAATGAGTCGTGACTTCCTGCGCAGCGTGGCGCGCACCTGGATGCCGATGGTGTGGGGAGCGGTGATGAGCTGGCTGGTCACAGTCGAGATCGTGCCCGCCGGCGCCGCCCCGAAAATCCAGGCCGCCCTGGTGGCGGGCTCGGTGCCAGTCGTAGGGGACTGCTCTACGCCGCGGCGCGATGGTTCGAACTCCGGATGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGGTGGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 66546-67554 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214180.1 Actinopolyspora erythraea strain YIM 90600 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 66546 28 100.0 33 ............................ CGAGGGCGCTCTCTACCGGTGGGACGGCAGCAA 66607 28 100.0 33 ............................ GATTCAGGCCGACAGGTTACACAGGGCCAGTAC 66668 28 100.0 34 ............................ CGCGTTCCGCTCGGTCGGGTTCGTGATCCATGCG 66730 28 100.0 33 ............................ CGGGTTGCCTTTCCGGATGACGCAGAGCCCGCG 66791 28 100.0 33 ............................ CGTTCCGGCGAGCTCGGCAAGGCCGGAGGTGGC 66852 28 100.0 33 ............................ AGGGTGAGCCCGCCGGAATTGATCGTCGCCGAA 66913 28 100.0 33 ............................ AGCACCGCCCATCGTGCACTTCGAGCACCTGTG 66974 28 100.0 34 ............................ CATGCGGGCGTAGGCCAGGGCGGCGTACCAGTCG 67036 28 100.0 33 ............................ CGCATCGAGCTGGTACTTCGGGAAGGTCATTGT 67097 28 100.0 33 ............................ TGACCATCATCGGCAATCTGACCGGTGATCCCG 67158 28 100.0 34 ............................ CAGGGTCACGGTCCCGTCTGCGGCCACCTGCCCG 67220 28 100.0 33 ............................ CCGGGAGGAGTTCTTCTGCCCACCGACCGGGCG 67281 28 100.0 33 ............................ CTGGCAATTCCCGAGCGGCGGGGGGTTTCGTGT 67342 28 100.0 33 ............................ CAGGAGGCGATGATGGCCACCTACCTCGGCCCG 67403 28 100.0 34 ............................ CCCGGGCCGGTCAGCATGTCCCCTGCACGCCACC 67465 28 96.4 34 ..........................G. AGCACAGCTACGCCGAGCATCTGCCTACCGGGAT 67527 28 71.4 0 .G......TA............CTCTG. | ========== ====== ====== ====== ============================ ================================== ================== 17 28 98.1 33 GTTTTCCCCGCGCGAGCGGGGGTGGGTC # Left flank : TCGTCAAGAGAGCCCTGATCGCCGCTGAGCAGTGTAGGAAGCGTCAGGTGTGCGGCCTCTTCGTGTGATATCCAGCCGATCGTTCCCGGTTTGGGGCTCTGGTTCTGGAAACACGGGATGGCTTTGCCGGTGTCGTGCAACCCGGCCAGCAACGCCGCGAAATCACGAGCCTCGCTCTCGGTGCTCCCCAGTTCGTTGGCGATCCACTGTCGTAGCCCGGCGGTAACGTGTCGCTCCCACAGCACGGTGGCGGCGGCAGCGGCATCCGCGAGATGTAGCCGGAGCGGGTAGGGCTTCGGCAGTCCCTCCCACTTCCCCCAAGGTGTTTCGCTCAAAGCTTGCTTTTTCCTTAGAACATGGAACCTTGTTAAGAAACAAGGTACGCCGTCGCTTCCGCAAGCGATCAGCGGGGGGTGGTGTTAGCGTGACTCGTAAGAGGGTGGGGTGCCGCGTTCTGTAACAAATCGATATATGATGCGGAAAGTCCCAGTACAACAAGT # Right flank : CAACCGTGCGGTATCCGGACATACCGTACTTTTTCCCTGCCAGGATGAGGGGCGTGGTGAGGTAACACGCGTTTCGCGTTGGCATGGCTATCTGTTGGTCAGTCCGATCCGTTCTTGACGGTCGTCGTACGAGCTGGAGTCCGTGACAGATCTATTGAGCATAGCTGTGTCCACGCTTGAGTGACTGAGTATTACGATTCTGCGCCCTCGCTGGACAGGCGGCGATGCCCCCAGAGTTCGATCATCGCCTTCAACCCCCACTGGCTTCCAACTTCTCGGTCAGGTTATCGCTACCGTGGCCGAGTCGCTGAAAAACGTGGGGAAACCGGATCAACTGTTTGAAGTGTCGAACAAGGAACCGACACACCCCCGCTTTCGTGGGGAAATCCCGTTGCTCCAGCATAGGAACCATAGCATCGATCGGTCAGGGCGTTATCCAGGTGGTGGGGAGGGGGCCGTTTAAAGTGTGCACTGGCTTGATCTGGTGTGCTTCACTTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGCGAGCGGGGGTGGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 70241-68261 **** Predicted by CRISPRDetect 2.4 *** >NZ_KN214180.1 Actinopolyspora erythraea strain YIM 90600 Scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70240 29 100.0 32 ............................. GCGGCGCTGCGGGAGGTGGAGCGGTGAACCCG 70179 29 96.6 32 ............................T GACACTGGGGTCGCGAAATCGGCTGTCCACAG 70118 29 96.6 32 ............................A CGAGGCACACCATGTCTATCACGAAGACCGCT 70057 29 100.0 32 ............................. GACACAGGAGAGGGCAGAGCCTTAGACGCCCT 69996 29 100.0 32 ............................. GTCGGGCCGTGGCCTCACCCGGTCGCGGCCAG 69935 29 96.6 32 ............................G AGTTCGTTGAGGCACCGGCGGATCCGCGGTGG 69874 29 96.6 32 ............................T TCCGACATGGTCGGATCAGGTCGCACACGGAT 69813 29 100.0 32 ............................. TTCTCATCGTTCGGATCGCCACCGTGCAACTT 69752 29 96.6 32 ............................T ACGCCGTTGAGGTAGGCCCATGCCGCGACGTA 69691 29 100.0 32 ............................. TCGTCGAGACCACCTACGCGACTCGGTTCCAG 69630 29 100.0 32 ............................. AAGTCCTGGCCCCACGTGGACACGATCGCGCT 69569 29 100.0 32 ............................. AGGCAAAAACACCCCACGAAACGACACGGCAC 69508 29 96.6 32 ............................G CCAGATCGATCACCGTCGCTTGATCTTCACCA 69447 29 96.6 32 ............................G AGCATCGTGTTCGGCGACATCGCTGCTGGATA 69386 29 100.0 32 ............................. GCCGCCAGCGCCGCCGTAGCCCCGGCGATCGC 69325 29 96.6 32 ............................T AGTGTTGTCCGGTGTTGTCTGTGATTCCCTCA 69264 29 96.6 32 ............................G GGATGCGCGTGGTGGTGCAGGGACGGTTGCGC 69203 29 96.6 32 ............................T CCGAAACCGGACGGGGCCGTGTCTGCGGCGGT 69142 29 96.6 32 ............................G ATTCGATTGAGCTTGCGGTTGATTCGTTGGCT 69081 29 93.1 32 ...........A................G AGGTGTGTGGATTGTGTGGCTGAGGGAGTAAC 69020 29 100.0 32 ............................. CCACACCCCGCAACCACGAAGGAGAACGTCAT 68959 29 100.0 32 ............................. GCCACAGACGGCCTCGCGCCCTCGCCTTGGTG 68898 29 100.0 32 ............................. CCAGCACCGACTCGCTGCCCCGGCAGATGATG 68837 29 100.0 32 ............................. ACGGCGTGGTCGACGACCTGGCGGGCGTAGAG 68776 29 100.0 32 ............................. TGCGGCGGTACTCCGCGAGCGTGCCGCGACGG 68715 29 100.0 32 ............................. GGCGCGGCCATCAACTACGGCAACATCCGGCA 68654 29 96.6 32 ............................G AACCGCTGATCGGGGCGGACAAGCGGGACGCC 68593 29 96.6 32 ............................G GAGCATCCCGACGTTGAGGATCGCTTGACGGT 68532 29 100.0 32 ............................. TGCACCGCGACGACGAGGGCGGGCAGTCCGAG 68471 29 96.6 32 ............................T CATGACTGTGGCCACGGCGAAAACTGCTGGTT 68410 29 93.1 32 .........A..................T CGGGCTCTCTGGCCGCGCTGGCCGCGTACGGA 68349 29 93.1 32 ........................G...G CACCGCGTCGATCTCACCCGTGGCATCGTCGA 68288 28 89.7 0 ........................-..TA | ========== ====== ====== ====== ============================= ================================ ================== 33 29 97.6 32 GTCTTCCCCGCGCGAGCGGGGGTGAGTCC # Left flank : GAAGCACCACCTGATCCGCGAGGGCGGCGGCATACCGCTGGCCGTCACGCTCACCGGCGGCAACCGGCACGACATCACCCAACTGCCGCCGCTGGTCAAGACGATCCCGCCGGCGCGAGGACGACGCGGGCGACCACGCCGCAAACCCGACGTGCTCGTAGCCGACTACGGCTACGACGACGAGCCCTACCGCGACCAGCTCCGGCAACGCGGGATCACGCCCTTGAGCAGCCGAAAACGCACCCGCGACACCAGCCAACCCGTGCGCTGGGTCGTCGAACAAACCCTCGCGCTGCTACATCAGTTCCGACGACCGGCCACCCGCTGGGAACGCCGCACCGATCTCCACCACGACTTCCTGAACCTGGCCACCAGCCTCATCTGCTGGCGCCGGCTCCCCGAGCAAATACGTTAGGGGGTCTTAGTAGCGTGGGTTCCAATGAGAACCTCCTGAGTCACGAAATGATAACGGAACAGTAGAATCCCAGCACAATACGTGT # Right flank : CAGAAGCGAGTATGCCCTGGCAGGCTCCAGAACTGCAGCAAAGCGCTTCACTAGAACCGCTCCGCGCCGGCCGAGGTTCGAGCCAGTTTGACTCAGCCAGTTTTCACTCATACCAAAATAGGACATGCTGTAACCAATTTAGCACGCAGTGGGTTCGTTCACCCAGAGTGTTCACTTGAATCCAAAAATGCTTCACTTTGCTGGCTCACGAAGTGAAGCACACCAGATCAAGCCAGTGCACACTTTAAACGGCCCCCTCCCCACCACCTGGATAACGCCCTGACCGATCGATGCTATGGTTCCTATGCTGGAGCAACGGGATTTCCCCACGAAAGCGGGGGTGTGTCGGTTCCTTGTTCGACACTTCAAACAGTTGATCCGGTTTCCCCACGTTTTTCAGCGACTCGGCCACGGTAGCGATAACCTGACCGAGAAGTTGGAAGCCAGTGGGGGTTGAAGGCGATGATCGAACTCTGGGGGCATCGCCGCCTGTCCAGCGA # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //