Array 1 205800-207597 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGLV010000005.1 Escherichia coli strain ME2L-20-54 NODE_5_length_275246_cov_30.657112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 205800 29 100.0 32 ............................. CCAGCGACCGCGACATCTCTCTATATCTCCAG 205861 29 100.0 32 ............................. CTCCCGTTTTTGGGTACATTCGTTTTTGATAT 205922 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 205983 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 206044 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 206105 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 206166 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 206227 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 206288 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 206349 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 206410 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 206471 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 206532 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 206593 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 206654 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 206715 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 206776 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 206837 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 206898 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 206959 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 207020 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 207081 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 207142 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 207203 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 207264 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 207325 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 207386 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 207447 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 207508 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 207569 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTATCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233299-235768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABGLV010000005.1 Escherichia coli strain ME2L-20-54 NODE_5_length_275246_cov_30.657112, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 233299 29 100.0 32 ............................. GAGAGAGTCCAGTATCAATCCCGCAATCCGCA 233360 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 233421 29 100.0 32 ............................. CCACCCTCAGATCGCCCTTGTACATCATGTAC 233482 29 100.0 32 ............................. CGCACCGGCTGAGCCAGCAACAACAGAAACCG 233543 29 100.0 32 ............................. ATCCGTACCGGCTGCGCCGGGCTTCGGCGGCT 233604 29 100.0 32 ............................. GGCGTGAATGAGGAATTGAACTTTGCATTCAA 233665 29 100.0 32 ............................. AAAGAGTTGGGACTGATCAGTTGCCAGCAGCC 233726 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 233787 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 233848 29 100.0 32 ............................. TATTGTTGACTGCTACGAATACGCAGACGAGC 233909 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 233970 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 234031 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 234092 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 234153 29 100.0 32 ............................. CTGGTCGCGGCAGGGCGTTCAATTTTAGGGGA 234214 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 234275 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 234336 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 234397 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 234459 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 234520 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 234581 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 234642 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 234703 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 234764 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 234825 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 234886 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 234947 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 235008 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 235069 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 235130 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 235191 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 235252 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 235313 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 235374 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 235435 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 235496 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 235557 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 235618 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 235679 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 235740 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //