Array 1 953689-954671 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP030223.1 Salmonella enterica strain SA20083039 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                                                          	Insertion/Deletion
==========	======	======	======	=============================	=========================================================================	==================
    953689	    29	 100.0	    32	.............................	ACGAGGGCGTCATCCTCAACAGTGCAGGCGAT                                         	
    953750	    29	 100.0	    32	.............................	TGAGTAATTATATACACACTAAATTCAGTGTC                                         	
    953811	    29	 100.0	    32	.............................	CGTCGCTTGCGTCCGGTCAGCGTGCGGGCGGT                                         	
    953872	    27	  93.1	    30	.....-...........-...........	ATCGCGCCCTCATCTCCCAGATTTTGATAC                                           	
    953929	    28	  96.6	    32	.....-.......................	TATCACTACCGGATCGGATCGGCTGAATTGAA                                         	
    953989	    29	 100.0	    32	.............................	AATATATAGTTATATATATGTTAAATAACCTA                                         	
    954050	    29	  96.6	    32	......T......................	CACATCTCCAAACTGGAACGCGCCAACGCTGC                                         	
    954111	    29	 100.0	    32	.............................	GAAAACTCTAAATCCAGCACGATTCGTTGTTT                                         	
    954172	    29	 100.0	    33	.............................	TTTCTGACTGACTGAGCCACCTCGACCACTGGC                                        	
    954234	    29	 100.0	    73	.............................	CTATTAATGCAGATTCTAAAAGAATTGCAGAAGTGTTCCCCGCGCCACCAACTCCTTGGGGGAAAACGGCTTG	
    954336	    29	 100.0	    32	.............................	CGCGAAGCGGCGGCTGCGCTGGCGGACAGTAC                                         	
    954397	    29	 100.0	    32	.............................	CAGGAGGAATCAACTCTCGACCCTGCTGATCC                                         	
    954458	    29	 100.0	    32	.............................	GCTATTGTGATGCAGTCAATGCAATGGGGTAT                                         	
    954519	    29	 100.0	    32	.............................	GCCATACCCACAACCTCCAGACGCCCAAGCCC                                         	
    954580	    29	 100.0	    33	.............................	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA                                        	
    954642	    29	  86.2	     0	TAA.........T................	|                                                                        	A [954666]
==========	======	======	======	=============================	=========================================================================	==================
        16	    29	  98.3	    35	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                                                         	       

# Left flank :   GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTGGT
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTTGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 5.99
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [2-5] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//