Array 1 1676245-1674189 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYX01000001.1 Clostridium perfringens strain 2789STDY5608889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1676244 30 100.0 34 .............................. GAAATTATTCTGTAATCTCCTATATCAATTTTCA 1676180 30 100.0 36 .............................. ATTCTAGTTTGAACTGATTCTACCATCTTATCTCCA 1676114 30 100.0 36 .............................. TAATATTCTCCTAGGCTTTTTAAGGTTTAAGCCTAA 1676048 30 100.0 36 .............................. TCTTATGATTTTATTAACAACATAACAACACTTCCT 1675982 30 100.0 36 .............................. ACTATATAAACCTTAACTATATCAAGCTCGCTACAA 1675916 30 100.0 35 .............................. TTATTATTTTTATTAATAATTTCAGTTGAACTTCT 1675851 30 100.0 34 .............................. ATATTAAAAACTGGTTTGGCACAATCCCCTTTTT 1675787 30 100.0 36 .............................. GATATAACTGCAAATATACTTTCCAAAAATAACGTA 1675721 30 100.0 36 .............................. TGAGTATAAATTACCACTTCAATTCCTAGATTACTA 1675655 30 100.0 35 .............................. TATAGGTGTTGTTGGTACATCTTTAAGTGGCAAGA 1675590 30 100.0 36 .............................. AAGTTCATAGTGACATACACAAAAAAAGGAAGGACA 1675524 30 100.0 36 .............................. CCATTCCACTTGAAAAATCTATTTGTAAATGGTCGC 1675458 30 100.0 36 .............................. GTATGAGATATTGCATCTTTTCTTACTTGTTCTGCA 1675392 30 100.0 36 .............................. TAAAAAGAAATTAGATACAGCTAATAAAAATTATGA 1675326 30 100.0 34 .............................. AGATATAAAGGGAAAAATTTAGCGAATCTTGTAG 1675262 30 100.0 35 .............................. GAATAAGCTTTTAAATCTTCAGGAGCTGGTGTCCA 1675197 30 100.0 36 .............................. ATAGAAAGAGTGCCTTGTAATCCCTTAATAAAACAG 1675131 30 100.0 35 .............................. CCTCCTTATCCTTTTAAGATTCTCTCTGCTTTTTC 1675066 30 100.0 35 .............................. TATGGATTTTATAAAATTTTAAGAGAAGCAACAAC 1675001 30 100.0 35 .............................. ATAATGACTATATAGTTGCTATTGAAGTTAAAAAA 1674936 30 100.0 36 .............................. GATGTTGTTCCTAGTTCTTCTCCAGAAGCTATAGCT 1674870 30 100.0 35 .............................. GCGAATTCGTTTTGAGTAAGACCTAGTGATTTTCT 1674805 30 100.0 35 .............................. TAAAATTCACTTGAAGAAGCTGTTCCTTCTGTCGC 1674740 30 100.0 36 .............................. GAAGAAATTAGAGTAGGTACAAATGCGATAGGTACT 1674674 30 100.0 34 .............................. TTACCTAACAAAAATTCTATTAATTTGTAAAAAG 1674610 30 100.0 34 .............................. TCTTTAGTTAGTCCTGAAGGTATGCTTATATTTA 1674546 30 100.0 35 .............................. ATCTTTTCTTCTTGTTCTTCTTCAACTTTCATTAC 1674481 30 100.0 35 .............................. TCTTAGGAATACTATTAGTTATTCCATTGATAATA 1674416 30 100.0 36 .............................. AAATGGACAGCTTGGAAATTTTAATGAAATAGCTTT 1674350 30 100.0 36 .............................. AATATATGAAATGAATTTGGAGGAATCAGTTAATCC 1674284 30 100.0 36 .............................. TGTGTTCTCATATCAAAAGTACATCTTACATACTTA 1674218 30 96.7 0 .................G............ | ========== ====== ====== ====== ============================== ==================================== ================== 32 30 99.9 35 ATTGAACCTTAACATGATATGTATTTAAAT # Left flank : GTAAGATATGAAAAGTAAAATGAATTATAATTATGCTTTTGTATTTTATGATGTAAATGAAAAGAGGGTAAATAGGGTGTTTAAAGTTTGTAAGAAGTATTTATCTCATTTTCAAAAATCAGTTTTTAGGGGAGAAATAACCCCTGCTAATCTTATAAACTTAAGAAAGGATTTAAATAAAGTAATAGAAAAAGATGAAGACTTCATATGTATTGTTAAATTATTAAACGGAAATGTATTTGGAGAAGAAGTGCTAGGAATTCAAGAAGTAATTAACGGAGAAACACTGATACTTTAATAATTAATTCAAAATAACATATAATTTTACCAGTGATTTAAGTGGAAAAAAGTTTGCGAAACTCTTGAAATAACTAAGTTTTAGGCTGATTTTCGATACCCTCTTTAATTCTTAATAAAACACTGGTAAAATTATAGTATAAGTATTGAAATAACTAGATTAAGATATATTTATTAAATTTAAAAATGGCTATTTTACAAGT # Right flank : ATTAATACTGAATTCACTAAAAATTAAGTAACTAATTTATATTGTTTTTCAGTATAATATAATTACTTAATGTCTTTCTATATAAAGTTTTATAATTAAGTAGGGGTATAATATGAAAAAACTAGCTTTTATTATAAAAAATATTTTGAAATTCTGGTGGTGGCAAGATATAGAAAAATCTAATATTTTTATAAGAGCTATGAATCTTGGAATGGCTTTATTTTTAAGTTTTTGTCTCTTAGCATGGATGTATGGAGAAAGCTTGAATATTATATTGAGATCATTTATAAGTATTTATGGAGTTCTATGCTTCATTTCTTTTTGGCCTGTTTCATATTTATTTGATGAAAAGGATAAAGTAAAAGAAAGTACATTTTATATATTTCAAAATATTTCAGTATTTTTCTCTATTATTATATTAGTTGTTTATATACTAAAGAATTATGATAGAGTTAAAAGCTAGTAATATAATCAAAAGCAAATCAATATAATTTAAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACCTTAACATGATATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [85.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1688059-1686339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYYX01000001.1 Clostridium perfringens strain 2789STDY5608889, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1688058 30 100.0 36 .............................. TCATCGACAAATTGATCTTCTCCCATAGCCATGGCT 1687992 30 100.0 35 .............................. ATTAATCTCGGGAGAGAGGGCATGTTGAAAGACTT 1687927 30 100.0 34 .............................. CGCAAGTTCTTCAGGTGCCTTAGATAGAAATTGC 1687863 30 100.0 36 .............................. TTAGTTAAATCACTTCTTTCTCCCCCTAAAGCTTCC 1687797 30 100.0 35 .............................. AAGTCTTTTAAATTATACTTAGCTTTATCTGAATG 1687732 30 100.0 35 .............................. AAGACTCCTTCTCTTATTTTCTTTGCTTTTAATTC 1687667 30 100.0 35 .............................. TACTATGAAATGTATGGCTTTTTGTGAACATGTTA 1687602 30 100.0 36 .............................. AGTTATTATTACTGGCATTGAGAGAAAGACTAATAC 1687536 30 100.0 34 .............................. ATCTGTTCAAAAAGGTTATTTGGTTAGTAAAGAA 1687472 30 100.0 36 .............................. GATTGACCAGTATTATTAGATCCTTCAATATAAGAA 1687406 30 100.0 36 .............................. AAAATTTGCCACATACCAAGTTCTATAGCTAATTTA 1687340 30 100.0 36 .............................. TAAAGCATGGGTATATTCTTACCAAACCATGATGCT 1687274 30 100.0 36 .............................. TCATGTAATTTTGTTTGCTTTTTACCCAAACTTTAT 1687208 30 100.0 36 .............................. AAGGAAAAGAGAGATCTAAATGATTTTGCAGGAAAG 1687142 30 100.0 36 .............................. TCTGTTGTAATTTCCTTTTTATCTGTCTTATCTAAA 1687076 30 100.0 34 .............................. ATTATTTTATCTGTAAGCTCCATAGCTATATTCT 1687012 30 100.0 36 .............................. TAAGCTCATATTCTTTTTTTATAATCATCATAATTT 1686946 30 96.7 37 ............T................. GATGTTAGAATCGACTAATGGTTTATCTGAAATAACA 1686879 30 100.0 35 .............................. AAAGTGGGGTATGGTATATGATATAAATGATGAAA 1686814 30 100.0 36 .............................. AAGAAAACTGATGAAAGAAAAAAAGTTGAAAATATT 1686748 30 100.0 36 .............................. TGTGTTGGATTCTTTAGAAAAGAATATTTATACATA 1686682 30 100.0 36 .............................. CCTATAGAAATAATATTATCAACTGGAATAATCCAA 1686616 30 100.0 35 .............................. CCCAAAATCTTTTTAATGCCTTATAACAGCCATGT 1686551 30 100.0 36 .............................. TGAATAGTACCCTTTTCTGGTAGATAAATACCATTT 1686485 30 100.0 35 .............................. CAATAATTGAGCCTGATATAACAGAAGAAGAAAAC 1686420 30 93.3 22 ............T..A.............. AAGACTTGAGAGCTTGTGCTTA Deletion [1686369] 1686368 29 90.0 0 .C.A..-....................... | G [1686364] ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.3 35 ATTGAACTTTAACATGGTATGTATTTAAAT # Left flank : TAAACTTTTTCATAACAATATACCTCCTTTAAAATAAAAAAGCCAGAGAAATATTATAAAAATATCTCCCAGGCTTTTATCCTTCCGTGTTCACAGTCTTTCTGTGCGTTTTCTCTTGGACCAGACTAGCTAAAAAGCTACGGAACCCTAGAAAACCATATATTATTAAACTTTAATTAACAAATTCAAAATTATAAGTTAATTTTAGCATAGTATAAATGCTAAATCAATTCACTGATAAAAATTTGAAGTTTACTGAATATGTAAATTTTAGTATTCAATTAATGCATTCTTAGAAATATTTATAAATACACAAATAAAATTTTACCAGCCTAAAATCATATAAAATCACCTTTCAGACCTTGAAATAACTAGATTACAAGTTGATTTTATATTGGTGCTTTAAATTAAAGTGAAACACTGGTAAAATAATAAGAGAGGTGTTGAAATAACTAACTTAAAGATAAATATCAAGAAAAAGAAATGGCTATTTTACAAGC # Right flank : ACTTCAGTTGTACAATGAACTGTATTCAATCCAAAAATATTTAAAATAGTTTTATTATTAACTTATTGACTAATATTTTTATTAAACAATTAATACCAGAAATATAGTAAAATTTATACAAATAATTATCTATTTCCTAAAATTTACCGTTTGAAAATTAGAATTATATCTATAATAAGTAATATTTTTATAAAATAAAAAGAAAAAATAGCCTAAGAAAATAAAATTAATAAAAGATAAATTTTGTAAAAATAACTTTTATTGGTATAATATAATCATCAAATGTATTTAATTTATATAATAAAGTTTTTAATAACTCTTGGAGTATTTAAACAATGTATTTAATGCATAAAATATTTTAACCATAACATTAGATGTACTAAACAAAAGATAAACTAAATTATTTAATTTTTCAATTAATTATTTAAAATCAATTTTAATAAAAATAAATTGGATTTTTTATAAGGAGGTGAGTATAGTGAAAGTTTTTCAACTAAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACTTTAACATGGTATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //