Array 1 4606309-4605366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086599.1 Nocardia farcinica strain SZ 1509 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4606308 29 100.0 32 ............................. ACGATCAGCGGCTGTGTGCGCGAACCGGTGCC 4606247 29 100.0 32 ............................. TCGACGTAGATCCGCGCATCCCCGGCGGCGAT 4606186 29 100.0 32 ............................. AGGTGATCGGCCTCGGCGTGCAATCCTCAGTC 4606125 29 100.0 32 ............................. ATTCCGGAGAGGGTGTCGGGCAGGTCGTAGAG 4606064 29 100.0 32 ............................. ACGCAGAACAGTTGACGGCAGCGGCGGCATCG 4606003 29 100.0 32 ............................. GAGACCACCGACCACAACACCACCGACAGCAA 4605942 29 100.0 30 ............................. TTCACGCACGGCTGCCTGTACGCGGACTGG 4605883 29 100.0 32 ............................. GAGGCGCTGTCCGCGCGACGAGAGCTGGCGCG 4605822 29 100.0 32 ............................. GGGGTGGCGCCGATCTGCCCGCGCAGGAACGC 4605761 29 100.0 32 ............................. GTCGCCGCTGGACTTCCGCCCGACACCGGCCG 4605700 29 100.0 32 ............................. AACGGCACCGAGGGCTGGTCCCCGCGCCAGTA 4605639 29 100.0 32 ............................. CGCGGCGACGTCCCGGTGTGGTGGTACGGGTT 4605578 29 100.0 32 ............................. TTGGCGGACGACGGCCGTGCTGGTGCGGTTCT 4605517 29 100.0 32 ............................. CGCCCCTGAATCCCGATTGGCCGCCACTGTGG 4605456 29 100.0 32 ............................. CCGATCCGGGAGGTGACCCGGAAGGCAGGCAA G [4605448] 4605394 29 93.1 0 .........C................T.. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCAGCGCTGGCAATGGTCGGCGCGCTGCTGGGCACCGCGGGACGGACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGTTGCCTTCGTGCGTCTAGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGGGACGACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : GACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAATCCCGCGACCTGGTCGCGTTCGGGCTGGGCAAGGTCGTACCCGCGCACGCGGAACCGCCTTCTTCGGTCGGCGCGGCAACCGCACCAACCGCCCGCTGGGCTCCGGTCGAATGCGCCGGTCCCACCGGCGTCCCGCGTCCTCGACCCTCGGGTGCGCACACCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGGCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCATGCGCAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4716740-4716230 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086599.1 Nocardia farcinica strain SZ 1509 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4716739 28 100.0 33 ............................ CTCATCCACCACCATCAGCGACGTGCGGCCGTG 4716678 28 100.0 33 ............................ CGACGCGATGGCCCTTCTCGAGCAGGAAGGGTT 4716617 28 100.0 33 ............................ CCAGCCGCAGACGACGACCGCCGAGCAGGTCCG 4716556 28 100.0 33 ............................ CCGCCTGAAACCATCGCAGAGAGGATCGAGCGC 4716495 28 100.0 32 ............................ CTAGGCCACCTTGCGGACCCATCCAACCAACA 4716435 28 96.4 33 ........G................... CGGCGGACCAGCGAGCCCACCGAACTCCCTTGG 4716374 28 100.0 33 ............................ GTAGACGCTGGCGACCGAGTGCCCGAATCCGGA 4716313 28 96.4 26 .............A.............. CTGGGTGGCGACGATGACCTCGGTAC Deletion [4716260] 4716259 28 100.0 0 ............................ | GA [4716232] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.2 32 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGATGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCACGTGCCCGGCCCGACCGAGTCATACCTTCCGTGCTCCCGCCCGTGTGCGGGGGGGGGGGGGTGAGCCCCGAAGCTAGTTGCCCGTGAGTGGGACCGACGCCTGAAACGAGCACTCGGTCGAAGACTGTCGCGACCCGAACCAATACGTTGTCGTCCACAACCGGCGGCGGCGAGACGCGAAAGGTCTTCGTTCATGCGGACTGCTGACTGGGCCGTGGGTCACCGCGATCGGGGATTCTCTGCGATGGGTCCGGTCGCAGCTCCGCGCGCAAAGGCCGGCGTGAGGGTTGCGCGCCGACCCACACCGGCTTGCGGAGGCGGCCGCGCCGACGTAGGTAACGACTGCATACACCTCACCCCACGGAGATAGCTATCTGATTGCGGCGGGGTCGTGTCGAGCCCGGCGGCGTTAGCCTTGGTACTTCGCCAGAGCAGGAGCCTCGAGCAAGGAGGGCCGCCATGCGCGGACGGTTTACCGGATTCGCCGCTGCTTCGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 5495946-5496096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP086599.1 Nocardia farcinica strain SZ 1509 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5495946 29 100.0 32 ............................. GCCTGCGCGTTCGGTGACAGGTCGGCCAGCGC 5496007 29 100.0 32 ............................. CCTCCCGGAAGCGCGTGCACGCCGCCGCCGCT 5496068 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGGATCACCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCCAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGGGGGTGAGTGTAGGGATCTCCGGCTGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGCCCCGTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGACGGCGGCCTGTCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGT # Right flank : CGTCACCAGAGCTAACGGGGCGGTCCGGGTGGTGGTCACCGACGGGAGGGACCGGATTCGGCGCGGTGGGGTCCTCCCGAATCAGGCGGTGGCGTCGAAGTGCGCTATCACCTTGGTCGGGCGCAATCGCACGACCAACTCACCGGGCACCGCGTTGCGCCGACCGAACTCCTCGGCCCGCTCGGCGCCCATGTAGCGCCCGCCCAGCGCGGTGGCGGTGCGCAGCAGCTCGTCCGGATCCTCGGAGAGCGTGACCCGTCCCTGCACCTGGACCGAGGCATACGGCGGCTCTTCCAGGTCGACACACAGCGCCACCCGATCGTCGCGCGCGAACGCCTTGCCCTTCGCCGTGTCGCGGCCGGTGTTGAATACGATCTCGTCGCCCTCGACGAGGTACCAGATCGGTGTGACCACAGGTCTGCCGTCCGACGCGACGAAGGCGATCTTGCCCGTCCGCGTCCCGTGATCGAGGAACTCGCGCACCTTGGGATCCGACAATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //