Array 1 58503-59202 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFI010000002.1 Enterococcus faecalis strain SCPM-O-B-8937 NODE_2_length_384154_cov_75.519687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 58503 37 100.0 29 ..................................... ATGCCGCTTAGAAGCCATGTTAGAGCATG 58569 37 100.0 29 ..................................... ATTACAGCGACGTAATTACGCTAACGGCT 58635 37 97.3 29 ....................................G GCGCCGTTATCCGTTCCTAGAACGCTATT 58701 37 100.0 29 ..................................... TTACAACCCCCTTTTTAACTTATTGCCAT 58767 37 97.3 29 ....................................T TAAAATTAAAACAGAAATTAAAACAGAAG 58833 37 97.3 29 ....................................G ACACCGTCTGGAAGTGTACCATGGAGGGT 58899 37 97.3 29 ....................................C CTATTATAATTAGTAGGGGTATCATGATC 58965 37 97.3 29 ....................................T CTAGAAGAATATAGAGCTACTAAAAACAA 59031 37 97.3 29 ....................................C GAAGATGGGAACAAGCTTTCTGGCGCATT 59097 37 100.0 29 ..................................... CCAGAAAGAGTTTTACGATACTATGATGA 59163 37 75.7 0 ......T..C.........A.A...AC..T..CC... | A,AA [59182,59189] ========== ====== ====== ====== ===================================== ============================= ================== 11 37 96.3 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : GTATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAATAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAAATAATTCTCCGAG # Right flank : AAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCGATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAATCCAATTTGCGATGACAACAGTTTTCCACTTTTTCTTCGTACCGTTTTCAATAGGATTAGCACTTGTTG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 302832-303922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZFI010000002.1 Enterococcus faecalis strain SCPM-O-B-8937 NODE_2_length_384154_cov_75.519687, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 302832 36 100.0 30 .................................... TCTTGTTAGCGCCGGTCTTTGCACGGGCTT 302898 36 100.0 30 .................................... TCGATTTTTTGCAAGTGTTTTGACACGTTC 302964 36 100.0 30 .................................... AAATTCTAGTGCAAAAATTACGAGCTAAGG 303030 36 100.0 30 .................................... CACTCACTTCGATTTTTCCGTCAACTGCTG 303096 36 100.0 29 .................................... AAGCTACAAATAAAGCTTTGCTAGAATAC 303161 36 100.0 30 .................................... TTGGTCTTTTAAACTACTACACACAGGTAA 303227 36 100.0 30 .................................... AAATTTATTCGAAATCATTTTCTTTAACTC 303293 36 100.0 30 .................................... TATCAGTCCATTGTCCTAAACCTAAGCCTC 303359 36 100.0 30 .................................... TCCTCACTGATACAGTTTCGTTGTGCCGCT 303425 36 100.0 30 .................................... ACACCCCTCGTGTTATAATTGATTTGCATT 303491 36 100.0 30 .................................... ATAACCTGTTGATTTCGATATTCTAATGTG 303557 36 100.0 30 .................................... GCTCCATAAGTTCCTACCATTCCATTTGCA 303623 36 100.0 30 .................................... TTATTCGAGTGTGCCTAGCCTAAAAGCAGA 303689 36 100.0 30 .................................... TTATTCGAGTGTGCCTAGCCTAAAAGCAGA 303755 36 100.0 30 .................................... TATAGGGTTAGAGTATGTAATTCACTACGT 303821 36 100.0 30 .................................... TTAGCGGTATTTTCTTGCGAAGCAGGCATA 303887 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : CCATTACCTATGAACTAGCTTCTGACGTTTAGTTTTTACACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATTTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGTCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA //