Array 1 109936-107954 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIBE01000002.1 Salmonella enterica strain Kentucky SRC73 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109935 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 109874 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 109813 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 109752 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 109691 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 109630 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 109569 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 109508 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 109447 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 109386 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 109325 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 109264 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 109203 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 109142 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 109081 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 109020 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 108959 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 108898 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 108837 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 108776 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 108715 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 108654 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 108593 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 108532 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 108471 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 108410 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 108349 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 108288 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 108227 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 108166 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 108105 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 108044 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 107983 29 100.0 0 ............................. | A [107956] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129671-127568 **** Predicted by CRISPRDetect 2.4 *** >NZ_WIBE01000002.1 Salmonella enterica strain Kentucky SRC73 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129670 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 129609 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 129548 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 129487 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 129425 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 129364 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 129303 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 129242 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 129181 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 129120 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 129059 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 128998 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 128937 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 128876 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 128815 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 128754 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 128693 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 128632 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 128571 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 128510 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 128449 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 128388 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 128327 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 128266 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 128205 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 128144 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 128083 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 128022 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 127961 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 127900 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 127839 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 127778 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 127717 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 127656 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 127595 28 79.3 0 ..G............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //