Array 1 4982-7209 **** Predicted by CRISPRDetect 2.4 *** >NZ_SULL01000018.1 Dickeya oryzae strain ZYY5 contig18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4982 29 100.0 32 ............................. AACGGAGAAGGGGAGTAGGAAATGCTTATTTT 5043 29 100.0 32 ............................. TCAGCGGCTGGCACGTCAATACGCTGACGAAT 5104 29 100.0 32 ............................. GCTTGATAGTAGTACACCCCTACAACGTAGGG 5165 29 100.0 32 ............................. TCTCGGCATAGTCATTTTCGCGGCGCCTTTTT 5226 29 100.0 32 ............................. TGATGCCTTAGCCCTATCTGCTGGTGGAACCA 5287 29 100.0 32 ............................. AGACTTGGGAACAGAGCGGCCGTCGAGACGGG 5348 29 100.0 32 ............................. CTGACCAGTTAATTGAGGAAAAAGGCGGCGAC 5409 29 100.0 32 ............................. GGGATGCTGACCTGCTGCGGCGTATGTGGGCA 5470 29 100.0 32 ............................. TGGTGGCAGTACCGCTGGTAGATAGCACTGAC 5531 29 100.0 32 ............................. GTCTATGACCGGTTCGTGAGCGAGCTCGGCCC 5592 29 100.0 32 ............................. TGTTTTGATAAAATAAGTATATTCGCTTTCTT 5653 29 100.0 32 ............................. GTTCCCGTTGCTGTGTCTATTTCAGCTTGCCC 5714 29 100.0 33 ............................. AACGTTACCAAGCCCAACGGCACTAGTCCCAGC 5776 29 100.0 33 ............................. TAAAAGGGGATTATAGTAATTTTGTTAGTTTCC 5838 29 100.0 32 ............................. GTGCTAGTAGAGCAGGTTGCGGATGGAGACAG 5899 29 100.0 32 ............................. TGCTCCAGCTATTCAAGTCTGACCGTCTCTGC 5960 29 100.0 32 ............................. CACGCAAAGCGGAGGTGGTGGCCGAAGCGCTG 6021 29 100.0 32 ............................. GCCATTGCGTACCGGGTCGGCCGTATGACGGG 6082 29 100.0 32 ............................. TTCCTCGGTGACGCTATCCGTGATGACCGGCT 6143 29 100.0 32 ............................. TCACTCGCCTTGTCAGTAGTCTTCATGCGGCG 6204 29 100.0 32 ............................. CGTTTTTGGGGCCCTCTCGGTTGTGGCCTGAC 6265 29 100.0 32 ............................. CCCGTTTACATAGCTACGATCATTTTCACAGA 6326 29 100.0 32 ............................. CGCGTCGGCGGCTTCCTCAGCATTATTGATAC 6387 29 100.0 32 ............................. GTGCTCGCGCCCTCAACCGAGAGATATATTCC 6448 29 100.0 32 ............................. GCCCGGATCACCCGCTGCGCCGCGTTGATTTT 6509 29 100.0 33 ............................. CTGTTTATCTGGTCGAGGATGCGGATGAACAAC 6571 29 100.0 32 ............................. ATGCGCTGGATTTATCAATTGGAAGGGCGAAT 6632 29 100.0 32 ............................. CCGAGAAAATCACCCCGGCCCGCGTTGTGGAT 6693 29 100.0 32 ............................. TTCAACTATATCTATACTTGACTGTACTTTCA 6754 29 96.6 32 ............................C CTTACCGCCAGTAAATGGCGACTCCTGCGGCC 6815 29 100.0 32 ............................. CAATCAGCCCAGCTTTCAGAGTCCCAATGATT 6876 29 100.0 32 ............................. CACTCCTCGGGATCGGCTAATTCCCAAATCGG 6937 29 100.0 32 ............................. AAATGGCAGACGAAAATATTAGCATTGAAATT 6998 29 100.0 32 ............................. CAATAGATAAAATAAAAATAAATATTGCTTTC 7059 29 100.0 32 ............................. GAGACAGATACCTAATGAGCGTACCTGTGTGG 7120 29 100.0 32 ............................. GAGACAGATACCTAATGAGCGTACCTGTGTGG 7181 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================= ================== 37 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAAAGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGCTTGATGCGGTATTCCCATTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCTTTTCCGCGCAGTGAGCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATTGGTAGTAATGCCGGTATAAAGCCATCCGCTGCCAGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTTGGTGGAATTTTTCAGGCTTTAAAAATCATTAGAAAACAAGTATATACTTTTAGA # Right flank : TTAACGTAATAGCGCGGCACAATCCGTCGCGATGCGCTGGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTATGTGAATAAAACCACAAAATAGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGACGACGACACTGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCTGCTATTTGCATCTACCCACGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGGACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGTAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTACGGTGCCGACGAGGTGGACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 259922-258671 **** Predicted by CRISPRDetect 2.4 *** >NZ_SULL01000006.1 Dickeya oryzae strain ZYY5 contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 259921 29 100.0 32 ............................. CACTACCCGCGCCCGGTCTACCAGCTCCATTT 259860 29 100.0 32 ............................. ATATAAACTCTGTCTATTTCTATGCTCCCTAT 259799 29 100.0 32 ............................. TCTGGCGCGGTTTAACTGACCGCCGCGCGGTG 259738 29 100.0 32 ............................. TAATTGGCGTACATGAGTTCATAGATATTGTT 259677 29 100.0 32 ............................. GTCAGGAACTGATCGATGCAACCCGAGGTGAT 259616 29 100.0 32 ............................. CAACAGGCGTTGTTACCGATGCACTGCTGATC 259555 29 100.0 33 ............................. TGAGCCACCAACGGGTACACCAGTTGATACAGG 259493 29 100.0 32 ............................. GCACAGGCGTCATGGGCGCTTCGTATGCGCTG 259432 29 100.0 32 ............................. CAGGATCACGAGGTGACAGGTAAGGACGGCGG 259371 29 100.0 33 ............................. TAAAGTGTATCGGCACGGAAAGGGGGCGCTGGC 259309 29 100.0 32 ............................. TTGTATTGAGTAGCAGATAAAGAAAAACCCAC 259248 29 100.0 32 ............................. GGCCGCCTGTGACGCGGTTACTCGCCCCATCC 259187 29 100.0 32 ............................. ACAGCGCTTTAACCAGCTCCGGATGTTGGCCG 259126 29 100.0 32 ............................. ACATTCAATCTCGCATCGACGCGGCTGTAGAA 259065 29 100.0 32 ............................. CCATCATTGCCCGCCTGGACAAGCTGGAAGGA 259004 29 100.0 32 ............................. ACAAATGCAAAAATCGGCAACGATTATTCAGA 258943 29 100.0 32 ............................. TACCGAGAGGCAGAGAAACAACTGTCAGATTT 258882 29 100.0 32 ............................. GCGAGCGACTTTGACGTTATACCGCTCTGCCC 258821 29 100.0 32 ............................. ATTCAGTTCTGGTCGTACTCGCAAGGCCAACA 258760 29 100.0 32 ............................. GGCATCGACACCAGCAAATTTGAACCTGCTGG 258699 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCCATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTACTGGAAGTGCGCGCCGGGGTTTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGAACAGGGCAATGTGGTGATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGGCGGATGCCGGTGGATCTCGATGGTTTGCGGTTAGTCTCTTTTCACCCCGTTGAAAATCAGTGAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : TAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACCGTCAGACAGCGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGAGGTTTTGGCGGCGGCGGGTTTTTTGAGTGCCAGTGTTTTCGCGGCCGGTGCCGATGAAGGGGAAATCATCGGTCGGTTGCCTGCCAGATTGTAAGACCCGCCTCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGTTCAGCCTGCTGTTGCAGGGATTGCGTGGCGTTGTAGCCTTCTCTGACCAGCGAAGCATTTTGCAGTGTGGTTTGTTCCATTTTATTAATCGCCTGGTTGACCTGCTCGATACCCAGTGACTGCTCCTGACTGGCGACGCTGATTTCGCCGACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCGGCTTTTTCCACCAGCCGGTTCCCGGCGTCCACCGTTTCTACCGAATGGCCGATCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //