Array 1 1954-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000117.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1953 29 100.0 33 ............................. TTGGTGAGGCTCCGGCATGCGGCGTCGGTCAAC 1891 29 100.0 32 ............................. GCTCTGGTGGGCAGCTCCACCGAGTTCCGGGC 1830 29 96.6 32 ............................T GTGCAGGACGTCGCGCGGCGTGAGGTCGTGCA 1769 29 100.0 32 ............................. CACCTGCACCCTCACCTACACCTGCACCTACA 1708 29 100.0 32 ............................. CGCCGCAGCTTGGCGTCGGCGGACGGTTCGAC 1647 29 100.0 32 ............................. CCGGACCGCTCGTGGCCGCCTCCGCCCTTGCT 1586 29 100.0 32 ............................. AGCCAGTGGACCTGGAGCCGCTCGGCCGCCCA 1525 29 100.0 32 ............................. TCGCCGTAGACCAGATCGCCGTAGCGCCCGCG 1464 29 100.0 32 ............................. CACCGGACCACCACGGAAGCGATCATCGGCGG 1403 29 100.0 32 ............................. GTCGCCAACGGCGAATCCCTGGAGACCAAGGC 1342 29 100.0 32 ............................. GGCCGCCGCGCACCGACGACGAGCAGACGCGC 1281 29 100.0 32 ............................. GTGGCGCGGATGGACGCGTACCGGAAGGCGGC 1220 29 100.0 32 ............................. GTGAAGGGCGCGGTCGGTGCCGACGCGAAGCC 1159 29 100.0 32 ............................. TTCGGCTTCGACCTGATGGTCTGGGAGCCCAT 1098 29 100.0 32 ............................. GCCCCAGCGGAGGCACCCGCTAGGGCCGTCCG 1037 29 100.0 32 ............................. TTGGTGTCCATCGCGGCCCGGTCCGACACGTT 976 29 100.0 32 ............................. CTCCGGTCCCACATGTGCTCGTTCGGGCGCCC 915 29 100.0 32 ............................. CCGATGAGTGACCGCGAAACCAAGGTCATCCG 854 29 100.0 32 ............................. CGGTGCCTCCGGCGGGGGAACGACAACCGCCA 793 29 100.0 32 ............................. CTGAGCCGGGCCGAGCGTGTGGCGCAGGCGGT 732 29 100.0 32 ............................. GCCGGCGCCCTGCTGGCGCTGGCGGGCGGAGC 671 29 100.0 32 ............................. CGGGTGACATCCAGCGGTCCATCCGCCGTGTG 610 29 100.0 32 ............................. CTCGCGGCGGCGCCGCTGGTGGAGGCGCTGCG 549 29 100.0 31 ............................. GTACGACTGTGGCTCCAGAGACGCCGGGCCC 489 29 100.0 32 ............................. ACCTCCGGGCTGGTCGCGACCATGACCCTGCA 428 29 100.0 32 ............................. CCCCCGCCGACCTTTCCGGCGGGGGCTTTGAC 367 29 100.0 32 ............................. GCCCCGACGGAGCACACCGCCGGGGCCACGGG 306 29 100.0 32 ............................. ATGTGGTCCCGGACTAGGTTGATCCCGGTGGT 245 29 100.0 32 ............................. GCGAGAAACCCTCGCCGATTACACCCCGTTCG 184 29 100.0 32 ............................. TCGGCGAGGACCAGGTTGGTTTTCACCGGGGA 123 29 100.0 32 ............................. GCCATCGACGGCGACCTCGGCACCCTCGTCGA 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 32 29 99.9 32 GAGAGCCCCGCGCACGCGGGAGTGGACCG # Left flank : GGTCTACCGGCACCAGCTGCGTCCGGTGCGCCGATCGGCGGCCGAGGCGATGGGGCGGCTCCTGGCCGAGGCGGAGGCGGGCTGAGGGCCCTACTCCACCTGCAAATCCTCCTGGACGTCAGAGAGCCGGTCCCACTTGCGTGAAACCGGCTCTGACCTGCGTCGGGACGGCGGGATTTGAACCCACGACCCCTTGACCCCCAGGCAGCCCCCGCCCTGCCGCCCGGGGGAGCCGAGGGGCACTGAGAGAACCACGCAATATCGCAGGCCGGAGACCGCCTCCGGCCACGAAAAAACGGAAGCAGCCACAGAGGGGCGCCCGCCCGGGCGCCCCTCTTCCAACTCCACCACTTCCGCTCCCACGTCGGCCGGGGCACGATCTGCGGGCCATCGCCTCAGCCGCCATGGGGCAGTATCGTCTTGGGGCGGGCCTTGCCTTTGGATGCCCGACTGGCAGATCGCGATTCGGTAACGCCTCGCGTTTGCCCAGGTCGTTTGCT # Right flank : GAATGCCTCGGCGTGCTGGATGGGACTGGATGGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCGCGCACGCGGGAGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.00,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 19609-19152 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000117.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 19608 30 100.0 31 .............................. AGACCGCGGAGTTCATGATGGCCAACCTCGC 19547 30 100.0 31 .............................. AGTCCGGGGTGGGCCTGGCTGCCCTGCACGG 19486 30 100.0 31 .............................. CGCGGCCCCCGGGGTCGACGTCGGCCGGTTC 19425 30 100.0 31 .............................. AAGACCTCGACGCCTACGCCATGTTGACGAC 19364 30 100.0 31 .............................. CGTCGGCGGCCGCGGCGTCCAGCTCGGTGTG 19303 30 96.7 31 .............................A CGGGGCGGACCATGGTCTACCTCGCGTGCTC 19242 30 100.0 31 .............................. GCTACGTCTTCCCCGCCGCAGCGACGGCGGA 19181 30 96.7 0 ...........A.................. | ========== ====== ====== ====== ============================== =============================== ================== 8 30 99.2 31 GAGAGCCCCGCGCACGCGGGGGTGGACCGG # Left flank : CCCCGCCACACCCCCTGACCCCCCCCGCCCACCCCCGCCACGCCGCCCGAGCCCGACCGGGCGCCCGGCCGGTCACAGGCGGGCCCGCAGGTGCTCGACCACGCTCTCCCGGAACCGGACGACGGCGGACGCGCGAAGCGCGAGTCCCGGCAACCGGAGCCGGGCTCCTCACCACCATGCGCCAACGCGCCCCCGCACCCCACCACCGCATCAGGAGCAGCCTCGCCACACCGAAGACATGCGCGGGAACCGTCACGGCAGCAATCACGGGGCAATATGCTCCGAGACGAGCCAGCCACTGCATGCCCTCCCCTCAGATAGCGATTCGGTAACGCCCCGCGTTCGCCCAGGTCGTTTAC # Right flank : GGTCCTCCGGGTCCACCTGGTCCAGGGACAGGTCGGAGAGGCCGAACGGGGGCAGACCGGACGGCAGCGTGCCGACGATTTCCACGCCGTGGTGGTCCAGGCCGAAGCCCGTGATGGCGGCCACCCCCGCGACCAACGCGAGGTTCCCGCCTCGTCCCGCTCGTAGCGGCCGACGCGGCGCGCCCCGTCGGCCGCTACGAGCGCGCCACCGGGGCGCGGGCGACATGGGCGGCCGAGGACGTCGAGTCCGGGGGCGCCACCAGCGGGGGCCGGCGGAACGCACCGCCGGCCCCCGCAGGGCGCACTCCGTTCGGGGCCGAGGGCCGCCGCCGGACGCCGCCACGACCACGGCGGGTCGCCGGTCACCCCTCCGGGGCCGCTACCCGTCGACGCCGCCCGACCGGGCGGCCGGGCCGGCGGCGCGGACCGCGTCCGGCTCAGGTGACCTCCAGGTTCGCCATCATCCCCATGTCCTCGTGCTCGGCGTTGTGGCAGTGGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCGCGCACGCGGGGGTGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 49469-50352 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000002.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49469 29 100.0 32 ............................. GGTCACCCGCCGTCGTAGCTGGTGAAGGGGCC 49530 29 100.0 32 ............................. CGACTTCGTGAAAAAGACGAGTCGGTTGAAAG 49591 29 100.0 32 ............................. AGGGACAGGTCCGGAATCGACCGGATGGCCTT 49652 29 100.0 32 ............................. ATCCCCAAATCGGTGTCGGTTCTGTACGGGAT 49713 29 100.0 32 ............................. CGGTGCTGGACGCCGTGCTGCGGGTGGAGGTC 49774 29 100.0 32 ............................. AAAGCGCCCCCGGCCTGCTGGCCGGGGGCGGA 49835 29 100.0 32 ............................. GCCGCGGCCGAGGCCGAGGCGCCCGCCGCCCA 49896 29 100.0 32 ............................. GATCCGACTCGTGGGCGGCGGACCGCTGGATG 49957 29 96.6 32 ............................G AGATGGCCATGGCCACGTCGCCGGAGATGAAG 50018 29 100.0 32 ............................. AGGCGTCGTAGCATGGCGGGTGCCTCCTAGGT 50079 29 96.6 32 .....................G....... ACCCGGTCGCGCCAGACGCTGAACGGCCGGGC 50140 29 96.6 32 ........T.................... AACATGATGAGCGCCTCCGACACCGCCGCGTT 50201 29 100.0 32 ............................. TGGGACCGGGTCCGCACCGACATGCTGAAGAT 50262 29 96.6 32 ..........................T.. CGACCTCCTGCGCGGTGCCGTCATCGCGCCCC 50323 29 82.8 0 .......................T.GGTG | A [50344] ========== ====== ====== ====== ============================= ================================ ================== 15 29 97.9 32 CTGCTCCCCGCGCACGCGGGGATGCTCCC # Left flank : GGGGAACATGGAGAACATGAGTGACGAGACGCAGCTCGCGGCGCGCGCCGACGTGGACCATCTGGCGGCCGTACTCGAACGCCGCCGGTCAGAACTGGCCGGTGCCAACGCCGTGATCGGCGGCGCCACGGTGGTGCACGCGGTCACCGAGCACGTCTGGGTCGGGGTCCGCGTCCCGGCGGTCGTCTGCGGAGCGGCGACCGACCCCCTCCGCCTCCGCGCCACCACGGCCCCGATCTCCTGCCGCCGCTGCACCCGCCGCCTCACGGGCTCCAGTGCAGGCGTCTCCGATGGCCAACTCACCCTGGACTAGCGCTACGCCCCGCCCGTTCCGGGCCGCCCGGCATCACTCAACGCCTATGGGGGGCGGCAACCATCCGATGGGATCGCCTCAACCCTCACCCACGGCCCTACCGAACCGAGTACCGTTCCCTGCCCAGCCCCCAACACAAGTTGCAAAAATCGCCCCGACCCACCGGTATGTCCGCAGGTCATCAAGT # Right flank : GGCGTCACCTGGTGGGTTGGGGGGTGTGGGCGGTTCGGCGTTGCCTCTTGGGGGTGGGACGGGACAAGATCGCTGCGCGGGCCATCGGCGCCGTGTGTTCCGAACGTGAGGAGAGCGACAGTGATCACCGATCCCCAGCAGGCCGCGCAGGAGGCCGCCGACGAGCTGCGCACGCGGACCGGAGTCGACTCCTACGACGTCGCGCTCGTCATGGGCTCGGGCTGGGCGCCCGCCGCCGACGCGCTGGGGTCCGCCGGGACCGAATTCCCCGTGACCGACCTGCCCGGGTTCGTTCCGCCCGTCGTCGCCGGGCACGCCGGCACCGTGCGTAGCGTCATCGAGGGCGGCCGCGACGTCCTCGTCTTCGTCGGCCGCACCCACCTCTACGAGGGCCACGGCGAGGCCGCCGTCGTGCACAACGTGCGCACCGCCGCCGCAGCGGGCGCGTCCACGATCATCCTCACCAACGCCGCCGGGTCGCTCCACCCCGACCTGGGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGCTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53353-54299 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000002.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 53353 30 96.7 31 .............................C CGGAACCCGACCCGACCGCCGACCCGAACCC 53414 30 100.0 31 .............................. CCCCCGCGGTGGCCGCCGCTACGGCGATCCC 53475 30 100.0 31 .............................. AGCTGAGGGTGGCGACTCCGGCGCCGACCAT 53536 30 100.0 31 .............................. GCGGGCGCACGGCCACCCCGACCGGCGGCGG 53597 30 96.7 31 .............................C CGGGTGCGCGCCCAGACGGAGAACCGCGTGG 53658 30 96.7 31 .............................A GCCCGGTCAACGCGGCGTTGTGGTTGTCGCG 53719 30 96.7 31 .............................T CAGGGCGATCGGCCCCGGCGGACTCTTCGCG 53780 30 96.7 31 .............................C CCCACGGCCGTGCGGGACCAGCGCCGGGTCG 53841 30 100.0 31 .............................. GTGGCTCACCGGTCGGGCTAGTCACTCTGCG 53902 30 96.7 31 ............................T. ACCGTCCCCAGCGACGACTTCACCGTGAGCG 53963 30 100.0 31 .............................. CCCTGACCAGGGCGTTCACTCACGTACAGGG 54024 30 100.0 29 .............................. CCGAGCGCGTCGCGTTCCGGCGCGGACGG 54083 29 93.3 31 ........-....................C GGGGTGATCCGCCCCGCCGGGGCCGGTGGCG 54143 30 96.7 31 .............................A CGGCAGGCCCAGGCCGCAGCCCCGCAGAGGG 54204 30 96.7 31 .............................C GGCTTGGCTTTCGCCGTTCCGCACGCGGTGC T,GCG [54216,54220] 54269 30 80.0 0 ......A.......G..........GG.GT | A [54292] ========== ====== ====== ====== ============================== =============================== ================== 16 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ACCGGGCAGGTGGCGGTGCGGGTCTCCGCCCTGGACGCGATGACCGAGACGATGCGCCGGCTGCGCGCCGAACCGCCGAAGGCGTTCGGGCCCGCGCGGGTGGCGGAGGTGGTCGACTTCGCCCCGGGCGTGAAGGGGCTGCCGCCGACCGACGCGCTGCGCTACATCCTCGACGGTCCGGTGGAGGGGCGCGTGACCCTGCGCCCCTCGGGGACGGAGCCGAAACTGAAGGCGTACGTGGAGGTGGTCACCGACCCGGGCGACGACCTCGCCGCCGCCCGCACCCGCGCGACCGCCCACTTGGAAGGCCTGAAGGAGGCCGTGCGGGGGCTGTTCCCCTAGCCGGGTCGACGCTCTGACTGGTGGTTGGCCGAAGGACAACGGTGTCTGTCGGGTGCCTCGTCCGAGGTACCGTCCCGACATTGCCGCCCTATTTGTCCGAGTCGCCACTAGTTGCTAAAAACGGCGATGCCGTAGCCTGAACGCCCAGTTCAGCAAGG # Right flank : TGGGGCTGGGTGGGTGGCGTGGGTCAGGTGGGTGGGATAGGGGAGTTTTCGGTTGAGGGGATGTGGGCTTTCTCGGGGGGTGGGGGTGTGATGGGGAAGTGGATGGGGCTGATGAGGTACTGGGTGCGGTCGGGGGTCGGTTCGTTGGGGAGGTGCGGGGCGATCGCCATTCGCATGCCGTCGATCATCTGGTCCAGTTCCCCCGGGCTGAGCCAGACGGCGTGTTGGCGGTAGCCGACCTGGTCGGCCGCCGGGTCGGCCTCGTCGTTGCCCAGGTAGGTCTCGTACTCGGCCGCGAGGACGGCGAGGGCGGTGGTGAAGAGGCGCCGATGGTCGCCGCGCGATAGTGAGGCGGCGGTGTCGGCATCGATCGACGCGCGGTCGTTGCGGAGCCGGTAGCGCCGCTCGACCGCGCCGCGCACCCGCCGCTCCTCGGCCACCTCCAGGACGCCACCGGCCGCGAGCACGTCGACGTGCCGGTAGACCGTGGCCTTGGAGAC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44-1071 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000128.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 44 37 100.0 36 ..................................... CATGACCCTCGTGGCGCCCATGCTCCGTGAGGACAT 117 37 100.0 34 ..................................... GGCTCGTGGCGGGGCTGCTGCACGGGGAGGTGGC 188 37 100.0 35 ..................................... AGGATGGTGAAGCGCGGTAGATCGGTGCCGTGGAG 260 37 100.0 36 ..................................... GTCTTCCAGGAGAAGACGGCCCCCTACCTGGTGACC 333 37 100.0 36 ..................................... GACGCCCCGTGGACCTCGTGCGCGGTCATCGCCCGC 406 37 100.0 35 ..................................... CTCACCCTGTCGGAGCGGTTCCGCGCGGCCATGGG 478 37 100.0 35 ..................................... CGCACGTGGGCGGCCCAGAACCCGTCGACGCGCAA 550 37 100.0 36 ..................................... TACGAGAACCCGGTAGAGATCGCCCACTGCCGACTC 623 37 100.0 36 ..................................... CACGAGGATGGGTTCCTGGTCCATGATGGTGTCCTC 696 37 94.6 37 ...........TG........................ CACACCACGAGTGCGGGGCGTCCCGGCGCAGCGCAGA 770 37 97.3 35 .......................T............. TTCACGACCCCGCGGATGGCGGGGTAGTTGCCCAT 842 37 97.3 35 ....................T................ CAGTCACTACGCGACGACGGTCGGCGTCGTGCTGG 914 37 94.6 34 ..........T.G........................ GAAGTCATGCATGTGCTGATGGCAAAGCCCCGCT 985 37 78.4 11 ..........TTG..CG...T.........C....G. GGGCGCGAGGT Deletion [1033] 1033 37 75.7 0 .........CG.G...G...T.A.C..........GT | AT [1037] ========== ====== ====== ====== ===================================== ===================================== ================== 15 37 95.9 34 GTGGCAGCGGCCCGCAACGGCCGCTGAGGATCGCAAC # Left flank : ATCGCAACCTCGGCGGCCTGGGCGCGGGTGCGCGGCGGCACGGG # Right flank : TGGCCATAGACATGGGCAGACGTGGACCTCGTGATGGCGGCAGAGACCGTATTCATGGCGGGGTCAGGCAGCAGGGGTCCAGGGCCAGGGGCGGGGGCCCTCGTGGCCTTGGAGGCAGCGCAGGCGGAGGACCGCCTCGTCGTGCATGCGGGGGCTGGTGGCGGCGTGCTGGGCGAAGTACAGGGCCATGCGCAGTTCGCGGACGTCGCGCATGACCGCGAACCCTGACCAGTCGGTGACGTCGTGGCCGTAGACCGTGACGAACTCGGCGTAGTCCGACCCGGGGAGCCAGGCGAACGAGGTCAGCTTGATCGCCGTGGAGACCAGGTCCCATTCGGGGCGTCCCAGGGAGCAGCGCTCCAGGTCCAGCAGGAGCGGGGGGCCGCCGTGCGGGCGGGCGACGTTGCCGACCCACGCGTCGCCGTGCACGAGGCGTTCTCCCAGGCCCGGGGGCAGGTCCAGCCACGCCTGCCGCAGCCCGGCCAGGTGGTCCCGCAGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCGGCCCGCAACGGCCGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 11457-12935 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000128.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 11457 37 97.3 37 .................T................... GTCATGCCCGGGGTGGCACCCCCCGCGACCTTGGGGT 11531 37 100.0 37 ..................................... ACCCAGCTCGAACACAACCTGCATGTGCTGAGCCGCG 11605 37 100.0 35 ..................................... TTCGCAGACCAACCTGGTTGTTAAGTTTCCCTTCC 11677 37 100.0 35 ..................................... TGGCCGGACGGCCGACCGATGCAGCAGATCAAGGT 11749 37 100.0 35 ..................................... CTCGTTGAGGCGGGCGATCTCCGCGAGGTCGGCCG 11821 37 97.3 37 ...................................G. GTGGAGGGGGTGGTGTCCATGCGGTGACGGTAGCGCG 11895 37 100.0 35 ..................................... AGGAGCATGGTCCTGAACTGTCCATACGGCCTGTC 11967 37 100.0 35 ..................................... TTGATCATCTTGCCCAGTGCGCCAATCTGCGCCGG 12039 37 100.0 36 ..................................... ATCCGCGTCCGCGCGGCGGTCGACCTGCTGGTCGCG 12112 37 100.0 36 ..................................... TACCTGAACCAGGTGGTGACCGCCGAGGACGGCCTG 12185 37 100.0 35 ..................................... TCGAACGGGTCGTCCGAGGCGCTGGCCGCCGCATC 12257 37 100.0 35 ..................................... GAACCGATGGTGCCGAGCTGGGACAGCACCCCGAG 12329 37 100.0 36 ..................................... TCCAGGGCGGCGGCGAGGTCGGTGAGGAGCGCGGCG 12402 37 100.0 35 ..................................... CGCGTGGCCGGCCCCGGCCGCTGCCCGGGGCCCCC 12474 37 100.0 35 ..................................... GCCGCCTGGCTCGATGAGGCCTGGGAGGACTGGCG 12546 37 100.0 26 ..................................... TCCGGGGTCGACCTGGTGCGCGACGA Deletion [12609] 12609 36 81.1 35 C...-G.T..GTG........................ AGCATCGACCTGGGGGCCGACATCGCCGGCGGACT T [12617] 12681 37 97.3 35 ...................A................. ACCCCGGTGACCAGCTAGTCCGGGAGGATGCGCAG 12753 37 97.3 37 .............................G....... CACATCACCGAGGCCGCGAGGGCCTACAGCATGCGGC 12827 37 97.3 35 .................T................... GCGGGCGACAGGTTGCCGCTGGTGGCGTCCAACTC 12899 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 98.5 35 GTGGCAGCGGCCCGCAACGGCCGCTGAGGATCGCAAC # Left flank : TCACCGACGAACTGGAAACAGACACCGGACGCTTCGCCGAATTGGTCGCCATCACCGAACTCCTGCACACCACCACCCGCGGGGACAACTTCGCCCTGGCGTCGCCTCTGCGCGCCCGAGCCGAACACCTCCTCGGCCGACGTGTCCCCGAGCGTGAGCCGAACTTCGCCCAGCGGGGCGGCGCGCTGTAACTGATCGACTCGCCCCTTGGCGCCGTGCGCTGCGAAGCAGCCCAATCGACACCCGCCCGCCGAGCTGAAATACCGCGGACCAGACACAGCGGCCACCGTTCGACGGCGTACGCGGAGAAGCGGTGTGGGCGGGTGAACATCGTGGTGGGATACTCGGGTAAGAAACGCGCCGAACAAGTTGGGAACCCGGAGTGGACATGAAAAGCCGGAGGGGTTCCCAGGCATGTTCGTCACGACTTCGATATGTCCGTCCTTTTCCTGCGGTGCTCCAGCTGAGTACTCGAGAAGTATTTCCGCTGATGATGGACT # Right flank : CGCCGACGGCACTCAGTATGGCGACAGCATCACTTAGTGGCAGCGAATGAGGGCACCTTCTCGTCACGGCACCGATGTGAAGGCTTGCGTCTTAGAACCGCTTCGGAAGGTGTGGCTCTCGGCTGGTGTCGGTCGCGTTGAGGCGCATTCGAGCAGGCGGAGTAGGGCGCGCGTCGTGCCGGTTCGTGCCGTCAATTCCCGGGTGGCTGGCGCAGGGAGAAGGCGGTGAGGGCGTCGGGGGCGAGGTCAGCGTGGTGGGCGTAGGTGTGGACGAGCGTGCGGACGGTGTCGGGGCCGGGGCGGGCGGTGCCGATGGTGCCTCCGCGGTGCAGGCGGCGGAAAAGCGCCTGTCCGGTGCGGGGGGTTGCTGTGGTCGCCCGGCGGCAGGTGTGGGCGCCTCCCGATGTGGCGGGTGTGTCCGGGTGCGGACGGGTGCGCAAGGCATCGGCGCCCTGGGCGTCGGCGATGTCGAGGAGTTCGCGCCAGTCGGCGTAGGCGCA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCGGCCCGCAACGGCCGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.90,-15.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 3952-4895 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000147.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3952 29 100.0 32 ............................. GCCCGCGCAACCGCCGCCGCTGCGACCCCCGG 4013 29 100.0 32 ............................. GCCGCGCGCAGCTGCACCGGCTGCGCCCCCTC 4074 29 100.0 32 ............................. GAGGTCCGGCGCGCCCTGGCCGCCGCCAAGCT 4135 29 100.0 32 ............................. AACGAAGACCTCTCGCCCTACACCATACGCAA 4196 29 100.0 32 ............................. GGCAAGCTGGCCGCTGTCGCGCGACAGGCCGC 4257 29 100.0 32 ............................. CCTGGTAGTCGAGGTAGTCGTGGATGCGATAC 4318 29 100.0 32 ............................. GCCGGCACCACCACGGCCGACGTCGCCCGCTT 4379 29 100.0 32 ............................. GACCACCGTGACCACCACCCTCACCCCCGCCC 4440 29 100.0 32 ............................. CGCGCCGGGGTGGAGGGTGTGCATCCGCACCG 4501 29 96.6 32 .....T....................... CCCCACACCTCCGTGCCGAAGTCGCGGACGGC 4562 29 96.6 32 .....T....................... AACGCCGGCATCGTCAACGGGCTCTACGTCCT 4623 29 96.6 32 .....T....................... GGGGTCGCGGACGACGAGGGGCAGGGCTTCAA 4684 29 96.6 32 .....T....................... CCGAGCGCGCCCGCATTGTCGCCCGCACCGTC 4745 29 93.1 32 ..C..T....................... GGCGTGCGGAACACCTCGCGCTCCCAGATGTC 4806 29 96.6 32 .....T....................... AGGCCGCCGTCCTCCTCGACAAGGCCGTCCAC 4867 29 89.7 0 .....T....................TG. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 97.9 32 GTGAGGCCCGCGCACGCGGGAATGGACCG # Left flank : CCGACCTGCTGTCGGCCATCCGCGTGATCGCTTCGGGCGAGGGCCTGCTGGCGCCCACGGTCACCCGCCGCCTGATCGCGGAGTTCGCCCGCCGCCCCGAACCCGCCCGCCCGCTCACCCGGGTCCTCGACGGGGTGACCGAGCGGGAGCGCGAGGTGCTGGGCCTGATCGCACGCGGCCTGTCCAACGCCGAGATCGCGGAACACCTGCACCTGAGCATGGCCACGGTCAAGACCCACATGGGCCGTCTCCTGTCCAAACTCCACGCCCGCGACCGCGCCCAACTGGTCATCATCGGCTACGAGACGGGCCTGGTGACCCCGTCCGGCGGCTGTTGATCCGCCGCCCGGCGGCGACCGACCCTCCGGTCACGACGAGAGAGCTAGAGTGTGCGCGACCCGGCGTCTCCCACAGCACCATGACCAAGGGCAAGGGCCTTTCGCCCACCATTCCCCATATCTCGAAAAGGTAACGCCCCGCGTCTGCCCAGGTAGATTGCT # Right flank : GATTGCCGTGGTGGGTTCGTGTCGACCGGGAACGGCCGCCTGACGCGCGCGGCCCGGCCCCCGCTTTGCGGGGCCGGGCCTCGCAGGGGTGCGGCGCGGACGAACCGCGCATCGCACAGCGCGCCGACGAACCCGACTTCATCCGCCCGCAGTGGCGCCGCCACTCCAGCCCCGGGACGGTCGGCCCGTCACCGCAGCGGGCACCCGGCCTCCGGGTCCCAGTGGTTCGGGGAGCACACCGCGATGCAGGCGAACGACCTGCGGGGCCCCGTGAGGTGCCAGGACCAGGCGAGGTCGCGTCCGGCGGCGAGGTGGGCGATCGCGGGGCCGTGCTGCTCCTCGGTCCAGAGGTTGGGAACGGTGATGTCGTCGGCGATGCGCCGGTACTGCTCCACCGCCCAATCGGCGGCGTCGGCGGGCTCCGTGAAGGAGGCGGCGATCATCGCGGCCGGTTTGCGCAGCCACCAGCAGATCTTGAGCGGTACGGCGGGCGACGCCCG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGGCCCGCGCACGCGGGAATGGACCG # Alternate repeat : GTGAGTCCCGCGCACGCGGGAATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 55446-56023 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000016.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55446 29 100.0 32 ............................. ATCACCATCGAGACCGACTTGGCCGAGGACAC 55507 29 100.0 32 ............................. TCTATATGCAGCAGTAAATCAAAGGAGAGTGT 55568 29 100.0 32 ............................. TATTTCAGTGCCGGGATTCGGCGATACTCCTA 55629 29 100.0 32 ............................. CGCTTCCGTGCGCTCCTGCTCCAGGGCCAGCA 55690 29 100.0 32 ............................. TCCGCAATGACAGCCTCGGTCTCGGGCGTGGT 55751 29 100.0 32 ............................. GCGCTGGCCAGCTCCTTGCGCTTGGACTGCAC 55812 29 100.0 32 ............................. GGGCGGGCGGGCGCCGGCGCCCCCTTGGTCTG 55873 29 100.0 32 ............................. CAGGCGTAGGCCACGATGCCCACCACAGCCGC 55934 29 100.0 32 ............................. TCCGCGATCTGCTCGGCGCTGACGCCGGCGAC 55995 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 CTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GGTGCGGGCCTACCGGTGCCTCGCCCTCTTCGCGTCCGCCGAGGACAGCGGCGGAAGGATCGCCACCATCGACGTCGCCCCGGCCAGGTTCGCGGCCTTGGAGCGGATCGACCGCGACCCCGACGTCCGCACGGCGCTCGCCCGGCTTTTCACCCTCGCGGCGGGCGGCATCTCACCCATCACGAAGAGGTGACCGGGCGCCCCCGAGCCCGCACGACGCACGGCCACCGGACGCCGGACGCCGGACGGCCGGACGCCCGCGCCCACCCTCCGACGCCGGACGCTCACGCATGCACCCGCCCTCGAACGTCAGGTGCCCGTCGGCTTCTCCCCGGATGCCCCTGTCCACAGGCCGTTCAGGCTCGGCCACGGCTCTAGCAGGGCACGGTGTCATGTCGGCATGCGTCCGCCACCATTTGAGGTCTTTGTGCCGTTTGCCCCATTCGAAAGAAGTGGTCAAAAACCGGGATGTCGTAAGGTGAAGCCCCAGGTCATCAAGA # Right flank : GACAACACGAGTTCAGCGACGCCGTCTTCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3397-3116 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000173.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 3396 29 100.0 32 ............................. TACTTTCTGCGTAAGCAATGGCGGCGCCCACA 3335 29 100.0 32 ............................. AGGGCGATCGCGGCGAGAGAAAGGGTGTCGAC 3274 29 100.0 33 ............................. GTCGAGCTCGACCCGGAGAACCTGTCCGGGTTC 3212 29 100.0 35 ............................. GCCCGGATGATGTCGGCCGCGAGCTTTTCCGCCTA C [3203] 3147 29 89.7 0 ..C...G..........A........... | T,A,G [3118,3124,3139] ========== ====== ====== ====== ============================= =================================== ================== 5 29 97.9 33 CTGCCCCCCGCGCACGCGGGGATGAGCCC # Left flank : GTCCGGCCGGGCTGCGCGGATACCTCACGCGGTGGCTGGTGGAGATCTCCGCGGGCGTGTTCATCGGTGGGCCGTCGGCCCGCATCCGTGAGGCGCTGTGGCAGGAGGTGAAGCAGTATGCGGGCACGGGCCGGGCCCTCCTCGCGTACAGCACCGACAACGAGCAGGGGTTCGCCTTCGAGACCTTCGACCACAAGTGGCGCCCGGTGGACCACGAGGGCCTGACCCTCCTCCTCCGCCCGCATCAGCAGTCGGCGGACGCCATCCAGCCCACGAAGGGCTGGAGCAAGGCGTCCCGCCGCCGCCGCTTCGGCGGCCGGTGAACAGCAGGGCGACTCGCGGCCTCGCCTGAGGACGTGCTGAGGCCGGCCGAGGCCGCTATCCAGGTGTCGTCCCTTCACGGAAGCGGCCAGTCCAGCGGTGGCTTCGTTCGGCCTCCCGGCCGCCATGAAGTTGCTCAAAACCGCCCCCCGGCGCAGCATCACCCCAGGTCAACAAGA # Right flank : CGATCGCGCCCGAGGAACTGGCCGCCGTGGGAGACCTAAAGGGCGGTAGGCCGGATGTCTCCGACCTACCGCCCATTTTTGTCCCGAATGCCCGGTCCACCAGTGGTCCACAGAGGTCCGGGGAACGTGGAGGAGGATGGCGAAGGGCGGCACAGAAAGACCAGCGGACGAAGGTGTATCGCCGCTGGTCAGTGCTGTGATTCGGCTAGTGCCGCGAGGGTGCCCCCTGCAGGATTCGAACCTGCGCACACGGCTCCGGAGGCCGTTGCTCTATCCCCTGAGCTAAGGGGGCGCGCTGCGTGGACAACATTAGCAGGGCCGCGAGGGTGGATCGCGCAAATTTCCGGGGGGTTCGGCCATACGCCAGCGGGGGCCGGGGTGCGGCGGCTAGTCTCGCGCCCGTGGGTGGAGATGCGCTGGCACGGGTCCTGGTGGTCGACGACAACGAGGTGATCAGGCAGCTCATCGCCGTGAACCTGCAGCTCGAGGGCTTCGAGGTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCCCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26518-25510 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000024.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 26517 30 96.7 31 .............................A AAGAGATTGACCTTGGAGATAATCTCGGACA 26456 30 100.0 31 .............................. CGCTCACGATTCTGAAGAACGGGCTAAGGAC 26395 30 96.7 32 .............................C TGAACCTGTACCAATTGATGAAGAGCCACAAA 26333 30 96.7 31 .............................A CGCGCCATGGACGCAGGAGCACCGGGCTGTT 26272 30 96.7 31 .............................T AGTGGGTCGCCTAGTGGGTCAACCTCCAGGT 26211 30 100.0 31 .............................. AGCACATGTGGGACCGGAGCTTCAACTCATG 26150 30 96.7 31 .............................T GGGAGCAGTACGACGCCCCGTTCACCCTGCT 26089 30 96.7 32 .............................C GGGAGAGTGACGCTTCGGCGCGGGTGACGCCG 26027 30 96.7 31 .............................T GATCCGGATACCACCGCCACGACGGCGACGT 25966 30 93.3 31 .........................C...A CGCGGCTGCCCGGGACGGCGCCGAGCACGGT 25905 30 93.3 31 .........................C...A TGTTGGAGAGGCGTCCGCGGGCCTGCCGTGC 25844 30 93.3 31 .........................C...T GCGTCCCATAGGCATTCATGCCGTCCGGCAT 25783 30 96.7 31 .........................C.... CGCCGTGAAGGCCGAGAAGCGGGCGCTCATC 25722 30 100.0 31 .............................. ACAGCGGGGCGAGCCGGTCCATCAGGTCGGC 25661 30 86.7 31 .....T......T............C...T GGTCGCGGATGCGCTCCCGCAGCACGGTGCG 25600 30 96.7 31 .......G...................... ACGACACGATGCAGAGCTGGCTCGGCATGGA 25539 30 80.0 0 ........T...T.....C........GTC | ========== ====== ====== ====== ============================== ================================ ================== 17 30 95.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCCTTCGGTTTCACCCCCGAGGCGAACCTCGATGACGGCAGCGGTGTGTGGGCGACGTCCTTCGCCGTCGCCGAGCTGAGCGACGAGGCCGAGAAGACGATCACCGCCCTCGTCAAGAAGGCCGTGAGCTGACACCGGCACTGCGATCCACCTCCGCCGGGCCTTTGGAGTGACCGGTGGGGCTGGTGGGGCGAGCGGGATCGCCGCGCGGGGCGGAGTCGATCCCTCCGCCCCAGTGCCCCGGCGGACCACCTCACGCCCCTACGAACTCAGCCAGGTGTCGGACCGCGAGGGGTGCGGGCGGGCAGCAGGCGAACGAGGCGAGCATCCGCGCTCAGGAGCACGGATGCCCACCGAGGCCAAGGGCGGCGCGATGCGACCGCCGATAGCGGCCAGAGTCGCGCTCAGCCCTGCCTTCCGTCACTCCGACGCCCTAGGGTGTCGCCATGAAAGTTGCTCAAACCAGCCCTTCGCCCGCCTGAACCCCCAGTTCAGTAAGG # Right flank : AAGGCGTACTGGTGGATGTAGTGAGGCCCCAACGCTCACGCTGAGCGGGGATGCGGCCCTCGCCCGCCGCCCTACGCTCCCACGTACTCCGCCAGGTGCTGGGCCGTCAGGGTGGAGCGGGCGGCCACCAGGTCCGCCGGGGTGCCCTCGAAGACGATGCGGCCGCCGTCGTGGCCCGCTCCCGGCCCCAGGTCGATGATCCAGTCCGCGTGGGCCATCACCGCCTGGTGGTGCTCCACCACGATGACCGACGTCCCCGACTCCACCAGCCGGTCCAGCAGCCCCAGCAGCTGCTCGACGTCCGCCAGGTGCAGCCCCGTCGTCGGCTCGTCCAGGACGTAGATTCCGCCCTTGTCCCCCATGTGCGTGGCCAGCTTGAGCCGCTGCCGCTCGCCGCCTGACAGCGTCGTCAGCGGCTGCCCCAGCGTGATGTACCCCAGCCCCACGTCCGCCAGCCGGTCGAGGATGCGGTGCGCCGCCGGCGTGTGCGCCTCGCCCGC # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGCCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29871-29415 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000024.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 29870 28 90.0 31 ...........--................C CTCCTTGTGACCCTCCCCAGGAACCCTCCTC 29811 30 96.7 31 .............................A CGAAAAGCAGCTGTTCGGCGTGGGCGCCCTC 29750 30 96.7 31 .............................T GGGCGTGTCGCAGCCGGTCGTCAACCGGGCG 29689 30 100.0 32 .............................. CGCTGGTGGCGTCGGCCGTGCCGTCGAAGACG 29627 30 100.0 31 .............................. CATCGGTGGACATGACCAGGACGGTGATGGA 29566 30 93.3 31 .........................C...A GAGCGGCGAACTGGCGGCGGGCGTCCTCGCG 29505 30 93.3 31 .........................C...A CCAGCGACACGTCCTCCCTGGAGGCGCGCAG 29444 30 83.3 0 ..............T..........C.TTC | ========== ====== ====== ====== ============================== ================================ ================== 8 30 94.2 31 GTGCTCCCCGCGCACGCGGGGATGGACCCG # Left flank : ACGCGCCGCCGACCGTGCCGATCCCGGGCTTCCCGGCGGGCGCGGTGCACGCGAGCGACCTGCCGTACCAGTTCGACGTGGCGGGGGCGCCGCTGGCCGGGGCGCAGCGGGGGTTGGCCGACGCGATGAACCGCTACTGGGCGGCCTTCGCGGCCAACGGCGACCCGGCCCGCCCGGACCTCCCGGACTGGCCCGACGTCGACACCGGCCATGTCCAGTCCTTGGCGCCCGACCGGATCGGTGGGGTCGACTACGCGGCGGAACACGCCTTGGACTTCTGGGCGCGCATGCCCTGACCGGTCCGACCCCAGGTGAACGGCGGCGGGCATCCGCGCCCAAGAGCACGGATGCCCGCCGGGCCAGAGGTGGCGCGGTGTGACCGCCGATAGCGGCCAGGATTTCGCTCAGCCCTGCCTCCCGTCACACCGACGCCCTAGGGTGTCGGCATGAAAGTTGCTCAAAACAGCCGTTCCCCCGCCTGAAACCCCAGCTCAATAAGG # Right flank : CGGCGCAGGCCCTCGGGCGCCGGGCTTCTCCACGACGGGCGCCCGCTCACGCGCGGGCGGTCAGTCTCCAGTGGTAGCCGTCCGGGTCGGTGAAGTGGCCGGTGTAGGTGCCTTCCCCGGTCGTGGCCGCCGGGGCGGTGATTCGGCCGCCCGACTCGGCGGCGGCCGCGAGAAGGGCGTCCACGTCCTCCCGCGACGTGGCGATGTGGGTGAGGACGAGGGCGGAGAAGCCGTCGCCCGCCCCCTCCACCCCCACGTCCTTGGCGAGGGCCTTGCGGGTCAGCAACCCCAGGCGACCCGCCCCAACGGCCGCGTCGAAGTCGATGTACTTGTCCCCGTAGTCGTGGCGGACCCCCATCCCGAGCGCCTCGTAGAACGCCCGGGACGCCTTCGGCGCGGCGACGCCGAGGTAGACGGTGGTCTCGGTCGGCTGCGGCGGTTCGGGCACCGGAGGCGTGTCCTTCTTGCCGGCGGCGGCCAGTTTCCACACGGCCCCGTCC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 34012-33005 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000024.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34011 29 100.0 32 ............................. TTCTGCCACCCGCCCGCGCGGGCGGCCGCGGC 33950 29 100.0 32 ............................. GCAATTTCGAACGAATTCAGAATGCTCGAATT 33889 29 100.0 32 ............................. ACCCCCGTGGAGACCCCGCAGGAGGCGGCGGC 33828 29 100.0 32 ............................. GCGCGGGGGCGCGCGACTTTCCGCGCGGAATC 33767 29 100.0 32 ............................. GTCACCACGCTCACGTCGCCGCCGTCGAGGTC 33706 29 100.0 32 ............................. CGGTCGCGGCTGTACCGGCTCACCTCAGCAGA 33645 29 100.0 32 ............................. AACCGCCCGCCGCTCCCGAGACGGGATCGGCG 33584 29 100.0 32 ............................. TTGCTCCGGTAGCTGCGCAGGGTGGTGGGGGA 33523 29 96.6 32 ..............C.............. CGGCGGAAGAAGGTCGCCGCGGGCGCGGCCGG 33462 29 96.6 32 ..............C.............. GGCGAGCCCGAAGTTCGACCGCCGGTCGACCA 33401 29 96.6 32 ..............C.............. GGCGGCCACGGAGGGCTCCCGGGACAGCCGCG 33340 29 96.6 32 ..............C.............. TGCGTCCCCTCGGGCAGCTCCCCGTCAAGGAT 33279 29 96.6 32 ..............C.............. GGGATCGGGTCGCCGCTGGACTTCCAGCGCTC 33218 29 96.6 33 ..............C.............. GCGCACCAGCTCAGCATCATCACGGACGGGGTC 33156 29 96.6 32 ..............C.............. GCAGCGGACGGCGCCTCTTTCCCCCGCTCGAT 33095 29 93.1 32 ..............C..........C... ACGCTCGTGCCGAGATCGCGCGGCCGGGTGTA 33034 29 82.8 0 ...........ATGG.............T | C [33008] ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CTTCGCCTCCGTCGCCAGGGACACCGAGGTACGCCACCTGATGCACGACGCCCGACTGGTCCCGCACCCGCCGACCCCAGGCGTTCGCCTGCGCGCCGACCGCCTGCTCGTCTACGACGACACCACCGCCCCTCGAATGACCGACCCCGCTCAAGGGACTCCACCCGACAAGCAGAGATGAGCATGCTGCCCTCTGAGGTTCGGTCGGCCGTCCTCTACACAGCAGGGAGGGCGCGCAGCGGTCTCCCGTACGGCATTCGCATCGTGATTCGGGCTGCTCGGCCGTCTCCGGGCGGCCGGTCGGGCCTCTTGTCGGGCGAGTGTACGACCCGAGCCCGGCACACCCCGACTGCTGCCTAGCGACGGCGATCACGAACGTAACTATTCCCCTCGAAACCGCGACGCCGGGGTAGTGGACTCCGATAATTGCCCGGAAGGAGCCGCGATCGAAAGTGGTCGAGAACGCTCCTTCTCGGCCCAAGCGTCCCAGGTCAAGAAGG # Right flank : GGGCGGTGGCCATGTCCGGGCCGGCTCCGTACTCCGGCGCAGGCGGGGATGGCGTCGCCTGCCGGGCATGCCTCGCGGTCACCGGCCCCGGCCACCCCCGGGAACACGGCTGGCCGTACGCCCGTCACCCCCTGTCGGCTGCCAGGTACCGCCCCAGCACCTCCGCCTCCGCCTGGACCCGGGCGGCGGCGTCGGGGCGGTCGAGGCGGGCGTATTCCTCCGCCGCCTCCGTCCGGTCCCGGACCTCCTTGGCGACGATCGCCCGCACGTCGGCCTCGGTGAGGTGGCGGCGCTCCGCCTCGGTCGCGCCGACGCCCAGCGCCGCCCCCGCGACGTGCTCGCTCCCGCTCCCGCTGCCGCCCGCCACCGCCTCACCCGCCGGAAGCGCCTCGGCGTTCTCGATCGCCGCCAAGGCCGAGCGCAGCGCCGCCACCGCGACGCGGTCCCGCGCCTTGAGCGCCGCTTTCAGGTCGTCACGCATGGTCGAGCGCATGGTCCGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 35703-35062 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000024.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 35702 30 96.7 31 .............................A ACATGTACATCGGCGCGCTCCTGCACCCGGA 35641 30 96.7 31 .............................A CCGTCCGCCGCAGCAACTCCTCCTCCGCGAG 35580 30 96.7 31 .............................C GGGTCTGGCCGGGGTCGATGCGCACATCGTA 35519 30 96.7 32 .............................T CGACGCCGGGGAACGCGGCCTTGAGGTCGGCG 35457 30 100.0 31 .............................. GCGACGGGTCCTTGGCCGCGCTCGCGGTGCG 35396 30 96.7 31 .............................T CCGCCGGGATGGACGCGTGGGGGCGGGAGAA 35335 30 100.0 31 .............................. ACTGGCCGGACCGGAAGACCTACACCGGGTG 35274 30 100.0 31 .............................. CCCGGAGCAGCCAGACGTTCATCGTGCCGCA 35213 30 93.3 30 ...........A.G................ AGTCGGGGCCCTCCTCCTTGGCGAGGGCAC 35153 30 80.0 31 ...........A.G..........AA.T.A CATCCCGATAGCGCCAACACCAGCCCTTTTC 35092 30 73.3 0 ......TT...A.TT..........G.GG. | A [35067] ========== ====== ====== ====== ============================== ================================ ================== 11 30 93.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : ATCGACCCGCACACCCACCTGGCGTGGGACGACTGGGGACGGTTCTGGGACAACTCGACCGGCTGGAAGCTGGACGTGAACTTCCCCGAGGCCCGGCACTTCTCCTTCGCCGACCACCAGGTGCTCCTCCCGCAGATCGCGGAGGAGTACGGGCTGCCGGACGAGGTGGTGCAGGGCACGATCGGCACGGCCGACGACCCCGACCGCCTGCACGCGTCGCAGCGGGCGTACGTGTCGGCGTTCTTCGATGAGATGCTGCGGGGCCGCCCGCAGGCCATCCTCGACACGGAATCGCCGGACCACCCGGACGCCCACTTCGTGGAGTAACCGGAGGGTGCGCCGGGCGGGCGAGCGTGCCACGCCCGGCGCATCCCGATTCCTTCTGTGCCGCCGAGGCTCATCCAGGTGACATTGGAATCCGGTACTTTTCCCGAAGGCCGTCTCGATAACTAGTGGTCAGAAGCGCTCCCTCCCGACCGAAGACCCCCAGGTCAAGAAGG # Right flank : GTGGGGGTGACCATCTGCGGCGTTCGTGTTCTGTGGTCGGTGCGGGGCAGGTGGAGCGGGGAAGGGCATCGGACGAGAGATGGGATGAGGCCGAAGTGGGAGACCGGAGCGTCGCCCGGGGGAACGCGGACGCGGCGCGCGCTGTGACCGGGCCCGGCACCCTGCTCACCTTTGGCCACAGCACTGCAGGGCACGTCCGGCTGACCGAGCTGCTGCACGGGGCCGGCGTGGAAGCCGTGGTGGACGTGCGCATCGGGCCCGGCAGCCGCCGGGACCCCGACCTCCACCGCGACCGCCTCGCGGAGTGGCTGCCGGAGGCCGGCATCGACTACCGCTGGGAACAGGCCTTGGGCGGCTTTCGCAAGGCACTGCCGGACTCGCCCGACGTCATCTGGCGCAACGCCTCCTTCCGGGGCTACGCCGCCCACACCCGCGAACCGGAGTTCGTGGCGGCCATGGACCGCCTGCTCCGGGGGGCCTCCTCGGCGCGCACCGCCGTG # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 40043-39465 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000024.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40042 29 96.6 32 ..T.......................... GACATCCGCCGCCGCGAGGACGAGGACCCCAT 39981 29 96.6 32 ..T.......................... GTGTTGACCAGGGCCTCGGCGGGGCAGTAGGA 39920 29 96.6 32 ..T.......................... CTGGCCCGGTGGCTGCGGAGCGTGGAGCAGGG 39859 29 96.6 32 ...........A................. GCCTGCACACCCATCCCCGGCCCGAACACCTC 39798 29 100.0 32 ............................. GACGTCACCGAGGCGCACACCAGCCGCGCCGT 39737 29 96.6 32 ...........T................. ACGTCGGCCACGCACGGCCCCCACGGCGTCGT 39676 29 93.1 32 .....G.....A................. TCCGCCGTAAAGCGCTGAGAAGAAACCCAATC 39615 29 100.0 32 ............................. GCCTGCACACCCATCCCCGGCCCGAACACCTC 39554 29 100.0 32 ............................. GACCGCAACCGGCGCACCGCCTCCACCACCGC 39493 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.3 32 CTGCTCCCCGCGCACGCGGGGATGACCCC # Left flank : TCGACTCCCGCGTGGCGGTGCGCAGCTCGTCGCGGCGGAGCCGTCGCGCCAGGAGAAGGGTGACGGCGACGCTGCTGACCAGGCTGATGCCGCCACCGGTCAGGATCAGCAGGATGTCGTTCACGGAGGGCCTCCGAGGGAGAGCGGGGGACCGAACGGGGGTTCCGAACGTGACCCGCGAGCATTCGCGACCCCGCCCCGCCTTGTCAAGCTCGCCGGGTCCCGCCCGGCCTCGCCCGGTCCCGGCCCACCGCCCGGCCCGAGGACCCGCCCGACCCTCGGTCCACCGCCCGGCCCAGGTCCCCGGAGCCGCGCCCGGCCGACCCGGAACGGGGGAACCACGCCGCGCGCCCTGCGCCCACCCCTCGCCAGCCACGCGGTACCGCTGACGCAGACCCGCCCACTCAGACGCCCTCACCAGCTACCCTCATGACCACCCACGAGCCACCACTAGTTGCTCAAAACCCCCGACCCATTGATATGTCCCCTGCTCAATAAGA # Right flank : CGGGGCCCGCCGAGTTGGTCCCGCATGCGGCGACGATCATCACGTCATGGGGCTTAAACAGGCCCGAGGAGCCCGATAACGTCAACGTCGACGGCGGCGGACGGCCGTCGATTCCACACCGAGGGACGGGGATGGGATGGGCGAGATCAGAACGACGAGCACGGACGGCCGCGGGGCCGCTCTGGTGGCCGAGCGGGGGGACGACTTCCTCACCTTCTGGCAGGAGCGCCGCCTGGCCACGCTGTCGACCGTGCGGCCCGACGGCAGCCCGCACGTCGTTCCGGTGGGGGTGACGCTCGACCCCGAGGCCGGGGTCGCCCGCGTCATCACCTCGGGCGAATCCAACAAGGCGCGCCTCGCGATGCAGGGCGCCCGCGTCGCGGTGTGCCAGGTCGACGGCCGCCGCTGGTCGACCTTGGAGGGGCGCGCGTCCGTCCGCGACGACGCGGAGGCCGTTGCCGAAGCCGAACGCCGCTACACCGAGCGCTACCGCGCCCCGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGACCCC # Alternate repeat : CTTCTCCCCGCGCACGCGGGGATGACCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCACGCGGGGATGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5574-5306 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000042.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ==================================== ================== 5573 25 100.0 36 ......................... CCCCCGGCAGCGGGTCGCGGCCTACCTGTCCGAGCG 5512 25 100.0 36 ......................... CCCCACCGCCGCCGAACACGCCGCCGAAGCGGCGCG 5451 25 96.0 36 ........................G CCCCCACCGGGGCGATGCGGTCGACGTAGGTCTCCA 5390 25 88.0 35 .............AG.........G CCCCTCCGGATCGTTTCGCGTGCTCACGATGCCGG 5330 25 88.0 0 ..T...........T.........G | ========== ====== ====== ====== ========================= ==================================== ================== 5 25 94.4 36 CTGCTCCCCGCGCGCGCGGGGATGA # Left flank : CTCGACCTGGTCGGCGGCGAGGCGCTCATCTCCACCTACGACCTGGGCGTGCCCGCGTCCCGGGTGGCGTCGATCGTGGACGCGTCGGTCGCGGAGCGGGGCGGCGCCTACGTGTTCGTCCGGCCGGACCGCGCCGACCTGACGGCGCTCGTCGACCTGGTCGAGGCGGGCAAGCTGACGGTGGACGTCGCGGAGACCTACCCGCTGGAGCGCGCCGCCGACGCCCACCGCCGCAGCGAGGAGGGCCACGTCCGAGGCAAGATCGCGGTCGAGGTCATGCCCTCCTGACCGACCGACCCGGAGCGCCGGGTGGTGCGGCGGGCGCAAGCCCGCTGCACACCCGGTGCGGAAGCCGCCGACCCCGCCGACCCCATCGACCTGGCCGAACCCCCGCACCGCCTGCGGCGGTCGCGGTACCCTTCCCCGGAACTCCGCCCGGGGCGTCACAACAAGTTGCCGAAAACGGCCCTCCGCCGCGATGAACCCCCAGGTCACAAAGA # Right flank : TCCCTCCAAGACGTTCGCATTCCACCGGATGGCCGTCGACTCACCGCTACGCGGCGGTCGACCGGGCACGGCGGTCTCGTGGCCGGAGTGGGCCGTTGGGGCGTGGGGTTGCGGGAACGTGGGAGGGTGGACGACCGTCGGAGTGGATGACGCGGAATCCCCGTGGACGCGGGGTTTCGCGGTGGTCGGCGCGAGCGGCGGACCGGTGGGCGGCGGTGGGACACGGCCGTCCGCGCGGGGGCGGCCCGCACCGGTGCGCTGGCGTCGACGGTGGGAGCGCGGATGGGCGACCGGAAGGCGTGGGACGGTGGCGGGCGGCCGCCGGGCCGGGCGCGGGTGGTGCGGTCGGTGCTCGGGTTCGGCGCGGTGCTGTTCGTCGCCGCCGCCGTCTGGCTGCAGAACACCCCCGACATGTTCCAGGACCTGCCCCGTTCGGTGCTGTGGACGTGCAGCCTGCTGGGCGCCGTCGGCCAGGCCATCGCGGCCGTCTACCTGGGCCC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGCGCGGGGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28397-28185 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000057.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28396 29 100.0 32 ............................. AGGCGTCGTAGCATGTCGGGACCTCCTGGTCT 28335 29 96.6 32 ............................T AAGCATCCTCTTCCCTGGCGAGATGGACGGGT 28274 29 100.0 32 ............................. GCGGATATTTTGGTGACCCGCATGATTTCGAT 28213 29 79.3 0 ............T..........T.CTGG | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGGGAGTGCGCCGCCCGCCTCCGACACCGGCCCGTCGCGTCCGCTGACCACCCGGCAGGAGCCCCCGCCGGACCCCTACGAGGACGCGGCGGCCCCACCCCCGGACCCGTACGAGGACGCGGCACCGAATCCGCCCGCCGACCGCCCGGCCCCCGGCCCCGCGCCGTCGAGACCCGGCCCGTCGGACCCCGGCGCGGACCCCTCCGAGGACGACGAGCCGCATCAGGCCGCCCCCGCATCGGGCCCGAAGTCGGGCTTCGCCCTCATCGAGTCCGAGCTGGGCGGCAAGGTCATCGACACCATCGACCACACAGCGGGGTAGTCGTCGCGGTCTGCGGCTCCGGGCCTCCTTGTCGACAAGTCGGCGGGGGGGCGGGAGCCGCGCCCGGGCGGGCCTTTCGGCCCTCTGGCTGTTCTGGGAGGGCCGTAGACGCACCGCGACACACGTGGAAGTTGCGGGAATCCGCTGTTCACCGGAGTATCCCCGCAGGTGAAAAAGG # Right flank : GCCGGGAGATGCCTGCGGCCCGTCCCCTGGGGGTCAGGGGCGGGCCGCTGCTTTGGTGGTGGGGGTGGGTCAGCCGAACTGGCCGGGCTGGTAGTCGCCGGCCGGCTGGTGGACGAGGGCGTTCATGCGGTTGTAGGCGTTCATGACGGCGATGAGGGAGACCAGGGCGGCGAGCTGCTCCTCGTCGTAGTGGTCGGCGGCGTCGGCCCAGACCGCGTCGCCGGCGCCGCCGCCGTCGGCCAGGCGGGTGCCCTGCTCGGCCAGTGCCAGGGCGGCGCGTTCCGCGTCGGTGAAGACGGTGGCCTCGCGCCAGGCCGCCACGAGGTGCAGGCGCACCGCCGTCTCCCCGGCGTGGGCGGCGTCCTTGGTGTGCATGTCGATGCAGAAGGCGCAGCCGTTGATCTGGCTGACGCGGATCTTCACCAGCTCCTGTGTCGCGGCCGGCAGCGTCGAGCCCGCCAGCGCCCGGCCCGCCGAGTTGATGTGCTTGGTGAACTTCG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19647-18703 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000059.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 19646 29 100.0 32 ............................. TCCACCTCAATTGGTGTGGCAGTCATCGGTAC 19585 29 96.6 33 ............................A CTCGACTTCCGCCCGACCCTGGCGCTCCTTATG 19523 29 100.0 32 ............................. TCGTCTATGTCGTCGGCAACGTCACCACCGAC 19462 29 100.0 32 ............................. AGGATGCGGTCACCCTTCTTGTACGAATCCAG 19401 29 100.0 32 ............................. ATGCGCGGCGGCACCGGTTCCGGAGAGGTCGC 19340 29 100.0 33 ............................. CGCAGGGTGCGGAACCTCGACCGGGCGGAACGG 19278 29 100.0 32 ............................. CGCAGTGGCCGGAGCGCCCGGCGCCGCGCCGC 19217 29 100.0 32 ............................. AGGTTGCCGCTGATCTGCGCGAAGCGATCGAG 19156 29 100.0 32 ............................. GAATAGGCCAGCAGGGCCCCGCCGAGGGCGGC 19095 29 96.6 32 .........................T... TCCTCACCCTCCGCAGGCGGTACGGCGAGGAG 19034 29 100.0 32 ............................. GATTCCTGGTACTGGCGGACCAGTCGCATGAC 18973 29 89.7 32 .........CT................T. GGCCGACATGGCCCGGCGTCAGTGCACCTCCG 18912 29 82.8 30 AC.........ATG............... CTTCGACTCCCGTGAGATTCGCGCATCCAA T [18887] 18852 29 82.8 32 T..........A.....G.......T.A. TCCACGGTGGCTGGCTCCTCGTCGTGGACTAT 18791 28 89.7 32 GC...............-........... GACCCCACCGGCGCCGCCACCGCCTCCGGTAG 18731 29 86.2 0 G.........A....A.G........... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 95.3 32 CTGCTCCCCGCGCACGCAGGGATGGCCCC # Left flank : GTCGCACGTCTTCGACGACCCGGCCCGGGTGCTGGCCCGGTTGGAGGAGGCGCGCGAACCGCGCGGCGACGCGGGGGCGGCCCGCACCACGCTGCCCATGACCGGCGCCGAACTGCACGCGTTCCTGCGCGACTACCTCGATCCGGGGGCGCCGCGCGGGCTGCGCGCCCCGGCCATGGCGGGGCAGCGGTCGTGGCTGCTGTCCCGGCTCGGCCCGCTCCTGCACGACGGCCACGACCCGGGCCCCGAACTCGCCCGCCGCCGCGACCTGGGCGTCCCCGTCCACCTTCCCGAGCCCCTCACCCCGGCCGCCCTCCTCGACGCCCTCCCCCTCCTCGACCTCCACCTCGACCCCACCCTCCCCGACCCCCCGCCACCCCCACCCGAGTAACCAAGAAGCCCCGCCCCCACACGGGCCGCGCTACCGTGTCCCCAGAAAGCCCCTACCACAAGTGGTCGAAAATGGCCCGACCACGCGGTATGCCCCCAGCTCAACAAGA # Right flank : CTAACGTGCCCTGAGGGATGGAGCCGTTGGAGACTGAGCTTCCCCGGATCGCCGCTTGGTAGGTGGTCCGTCCGAGAGGGAGGGGTATCGGCGGGTGTGGCGCGTTCGGGGTGTATCGGCCCGTCGGTGTTCCGTGCCGTGAGGAGGCCGAATCCATGACCACGCCGCCGTCCGCGAACGGTGACCGTGTGACGGCCGGGGGCGGTCGCGAGGGCGTTGAGTCCGCTGGAGGCGGCTCTCAGGGGAAGAGCGCAGCGGGCGAGGCCATGGGCGGCGTGGTTGTCGGCGGCGACGTGGCGACGGCGGAGCAGCCCTTCGGCGATTCCGACGCCCATTCCGGCGCCCGGCCCGACGCCGCTCCCGCGTTCCTCGTCATCGATCTCGCCGCTCCCGCGCTGTTCGCCGGGGCCAGTGCCGCCGGGACCGCCGCCGACGCCGATGTCGTCACCGACGCCCACGGCCTGCCCTACCTGCCCCGGCACCGGGTCGCCGCGCGGCTG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCAGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 654-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000036.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 653 30 100.0 36 .............................. TACCGCTCTTCTACGCGGACCTCCTCCCACTGAGGC 587 30 100.0 35 .............................. ATGTCGCCGTCCTCGGATACGTAGGCGGCGAGATC 522 30 100.0 36 .............................. CCGCTCCCGGCCCGAGAGTCTTCGTTTCTGCACAAG 456 30 100.0 36 .............................. GTGTTAGCTCACCACCGGATCTCGCGGATCTCCCCG 390 30 100.0 37 .............................. GCGCGGCCGTGCGCGCCATCCGCCAGGCCCAGACCGG 323 30 100.0 35 .............................. GTGTTGGCCGACAGCGACTCGAGGAAGCCCGCGTG 258 30 100.0 37 .............................. GAGGCGGCTTTGGTCGTGTACTTCGCGAGGTAGGCCG 191 30 96.7 34 ......................T....... GCCGGATCGCGGGCCGGTGGGCCGCGCGTCTCCG 127 30 93.3 35 .......G..............T....... GCCATCAGGGCGAGGCGCACGGACCGCCGGTCGGC 62 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 36 GCCGCTCATCCACCCTGGAGGGCTCGCAAC # Left flank : CGTCTACCACCGCACCCTCAAGCGCAAGGTCAGCTACGAGGAGCTCATCCACCTCGAAGCCCTCAAGATCGTGCGGCTCTGCCTGGAGGACACCCCGTACAAGCCCTTCCGGCCCTGGTGGTGACGCATGTTCGTGGTCGTCGTCTACGACACCCTGGCCGAGCGCAACCCGCGCATCCTCAAGACCTGCCGCCGCTACCTGCACTGGGTCCAGCGCAGCGTCTTCCAAGGCGAGCTGTCCGCGGCCCAGCACCGGTCGTTCACCGAGGAGGTCAAGCAGGTCATCGACCTGTCCTACGACAGCGTCCTCATCTACCGGACGCAGACGCCGCACCTCGTGCAGACCGAGTCCATCGGCCAGGAGTTCATGGACGGCGGCCCTGTCCTATGACCACCGGCGCAAGCGTCTGACTTGCGATGTCGCACAACCGCCGGTCCGCTGCAGAAACCCCTTCTTCGGGACGCCCGAAGCAGGGAGTGACCTGCGGCTTTACCCTCGG # Right flank : CGTGGCGGCCGGGGACCGATATGACGTGCGGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCTCATCCACCCTGGAGGGCTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 9088-10022 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000036.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 9088 30 100.0 34 .............................. CGGAGGAGGCGCGCGCCAGGCTCGGCGCGCTGGT 9152 30 96.7 36 .................T............ CCGCACCCCTGAACCGGTGCTGTCCCTCGCGGTCAC 9218 30 100.0 34 .............................. GGGGGAGCACGCCGGCGCCGAGGGAGGAGGCGAG 9282 30 100.0 36 .............................. CATGCGGGCGTACACGGACCGCAAAGACCGCGCCAA 9348 30 96.7 35 ............................A. CCCGGTATGACCGCCGTGACGGCCCGGGGCGACAT 9413 30 96.7 34 ............................A. CCGAGACGACATCCCCCATCGCCTACACCACCGC 9477 30 96.7 35 ...........................A.. CTGGGCGTCGACACCCCGAAGACCCACGGCAGCAT 9542 30 90.0 34 ........TT...................G GCGATCATGGCGTGGGCGTGGATGTGGGGGGCCC A [9569] 9607 30 96.7 36 ..........T................... CGTCGAAACGTTGATCATTCCCGGCCTGCTGCAAAC 9673 30 100.0 34 .............................. CCGCCAAGGTCAGCAAGCCGTGGGAGGAGGTCAG 9737 30 100.0 34 .............................. CCGGCCAGACCTGCGCGGCGTAGCGCCGCGCCAC 9801 30 100.0 34 .............................. CGCCGGTGGCGTCGGGGGCGTACTCGCGCAGAGC 9865 30 100.0 34 .............................. GCCCATCTGCCTACCCTGAGTGCGCACGCGATGT 9929 30 100.0 34 .............................. CCGCCGGCCGTTCCGTAGACCGGGCGCACGTAGC 9993 30 96.7 0 ............T................. | ========== ====== ====== ====== ============================== ==================================== ================== 15 30 98.0 35 GTTGCGATCCCTCTAGGGATGATCAGCGGC # Left flank : GACGCCTTTCTTGCGCGGTGCCCCCGGGAACACCGGCGGGCACACCCCCAGCGGCCGCAGACTGCTGCCCTGCCACCCCGAATCGTGCAATTCGGCAGCAAGCTCCGCATCCTGCCCGCGAATCAGCTCATAAACCACCCCGCGCGCCGCACCGTGCACCTCCGGCCACGCCAACTGCGGCGCCTTCGCCGCCACATCCACCCAGAAACGCATCTCCACCCACCATCGCTTTCGCGGATGCCGCCATTGCTACCAGCAGCCGACGACAATTGATGGAAGAATCCGAAGTGCAGCCGGAACCGGCCAAGACTCCGGGTGAACAATGTCCGACTATAAGCGTTTTGCGGGCATGCATGCAGCCTGAAAGCATTGAACCCTTTTGGGATTGCAAAGATGCATCTTGGGGCGCAGAGCTCAAGATGTTCCCGTCATCACCCCTTGAGGGAAAAGTCCGGTCGTGGCCGTCAAGGTCCGATCCTTGACGGCCACACCAGCCAGGG # Right flank : CCCGAGGGTAAAGTCGCTGGTCGGAGCACGTCTCGGGTGACCGAATCCAGCGACTTTTGTAGCGGACCGGCGGTTGTGCAGCGCCGCAGGTCAGACGCTTGCGCGAGCACTACTGCGGAAACCATGAACCGCCTGCCCTTCGCGTCAGCGAATCGCGTCGAATTTCCTGTGTACTGCCTACCCGGTGTGGCGCCTGTTCTGGCGAAGACCCTAGCCCTTGCTGCGTACAACAGGCGGCCGGCGGCGGCGCGAGCCGTTCACCCCCGCTGAGGCTACGCGTCCAGGGGTGAGGCACTCGCGTGCAGTTCCTCCACTTCGCGGACCCCACGGTAGGGGTCCAGGCGTGGCAGGAAGCCGTGGGCCAGCGCGATACAGCGGGCGGCTCCGGTCTCCCTCGCCGTGTCGAGTGCGCGGTGCGCGGTGACGGCGGCGCCGGCCACCTGGCCGCGGTCGAGGGCGGCGTGTGCTGCGTAGACGCCCATCACCGCCCGGGTCCGGGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCTAGGGATGATCAGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 18531-18690 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000036.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 18531 30 96.7 34 ........................A..... ACGCCGCAATCGTGGTTGCGCAGCAGGTGCCCCG 18595 30 100.0 36 .............................. GTGCTTCGAGGTGGTGCGGCTCGTTGCGATGCGGGC 18661 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 97.8 36 GTTGCGATCCCTCTAGGGATGATCGGCGAC # Left flank : CGCTGGCCACGCCGTCGGGCGGCGCGAGACGGGGGTCCTCCTTGGTACTGCGCTGCTGCGCGGGGCGGGACTCGACCTCTTCGAGCAGGGCGACGTCTGGGCGCGCGTCGCCGATCAGCGACCGCTCGAACTCCGCCCGCCGGAGTCTCATCTCCGCGCCGCCGTGTACCGGCTGATCTCAACGGACTTGGCCGCGAGAGGGCCGCTCGGGTCCATCGCCGAATGGGCTGCCCCCTTCGAGCACACGGGACGCAAGGTCGCCGGCCTCGCCCACACCGGCATTCTGCAGCGCGGACTGCGCGCCGTACTCGCTCGGCACATCGTCTTCGCGTGGAACCGCCTCGGACTTCCCTACGCCGATCAAGCCCGCCTCGCCACCCTGGCACGCGATGCCGCCTTCGCCGACGATCCTGTGGCAACGCGCCCACGTGCATAGCCAGCGACGCGATTCCCGCCGACACACGCGAAGAGCGCGACGCCGAACTCCGCAACCTGCGCGT # Right flank : CCGAGGGTAAAGGCCCAGGTCAGTGGCTGATGGGGCGGGCTGTTCTGAGGGTGTTTTGCAGCGGACCGGCGGTTGTGCAGCGCTGCAGGTCAGAGGGTTGCCGGGGAGGGTGGGCGGCAAGGGCGGGGCTCCGATTGCTTCGGTGTGGGGGCGGGATCTCTGTCGGCGGCTTCGGGCATGCGGTGGTGTGGTGGAGACACTAGTCGGGGGTGGCCACGGTTTTGGGATGAATGCTGGGAAGGCGGGTGGGGCGGGGCTTTGGGTCCGTCTCAGTTGGGTGCCTGCGGCGTTCAAGTGAGGGCGGGGCGACGCGTCTCAGTCTGCGTCTCATTCGTGGGCGTACACCTGTGTTCACCTGGGGATATGCACTCATGCCGTGGTCGTTGGCGGACGGCCGTGTACGGGGCGGAACCCGCTACTCCAGAATTCCCGACACGTTGCCGAGTGGTTCGGCGCCCCCGGACGGTGTTCCGGGCACCTGTCCGAGAATCGATCGTTTC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCTAGGGATGATCGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 4 38690-37558 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000036.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 38689 24 100.0 43 ........................ ACGTTCGTGGTCCGCAACGAGACCCACCACTGGCTGCCCCGCT 38622 24 100.0 43 ........................ TGCAGACCTACGGCGTCTCGCGCGGCACCGCCCGCCGGCCGCT 38555 24 95.8 40 ........T............... CTAACGGCCGGGATCACCAACGAGGGCACGTGGGGCCGCT 38491 24 100.0 42 ........................ GTCTTGTTCATGGGGCCCTTCCTGGTGGTGGGCCGTGCCGAT 38425 24 100.0 41 ........................ GCCGCCGCGCTCGCCACGCACCGCCCGCCCCGCCAGCCGCT 38360 24 95.8 42 .........C.............. AGTTCGCGGCGGACCTCGGCGGCGACGATCGTCGGCGCCACC 38294 24 91.7 40 .....C.................T GTGTATCCGCAGACCTGCATCATGAGCACCTCGCGCCACC 38230 24 87.5 40 .....C.....A........A... GCGGGGGTGTACACGGCGGCTCCCATGCGAACATGGCGCC 38166 24 95.8 44 ..................T..... GCCCACCAGTGCGTCGCCGCGTTGGCGGCCAGGCCCGCGTCGCC 38098 24 95.8 40 ..................T..... TGATAGCCCAGCTTCCGGCACAGATCCGCAGCGGGTCGCC 38034 24 100.0 42 ........................ GCGGCCGCCCGCATCGCCGTCACCCACGTCGCCCAGGCCGCT 37968 24 91.7 41 ..........GA............ GTCAGCGGGTGGCGCGTCTGCGGAAGCGCCGGGGGGCCGCT 37903 24 95.8 41 ...T.................... CGCAGGTGGCCGACGGGCAGGTGCATCACGTAGTCGTCGCC 37838 24 100.0 39 ........................ ATCCGCTCGACCACCGACCGCAGCAGCTCCCGAGTCGCT 37775 24 100.0 44 ........................ GCAGCTACCACGCCCGGCGCACCCAGCCAGGGGTATCGGTCGCC 37707 24 100.0 42 ........................ CTCGTGATCAGGTAGGCGGCGCGGCGGGCGGCACGGGTCGCT 37641 24 95.8 36 ..............A......... GGCCAGTTCGCGGTCACCCCGCCGACCGGCGTCGCC 37581 24 95.8 0 ..........G............. | ========== ====== ====== ====== ======================== ============================================ ================== 18 24 96.8 41 GATCATCCCTAGAGGGATCGCAAC # Left flank : AATTCTGGAGTAGCGGGTTCCGCCCCGTACACCGCCGTCCGCCAACGACCACCGCCTGGGTGCATATCCCCAGGTGAACCCGTGTGCACGCCCCAGAACGAGACGCAAACTGAGACGCGCCGCACCGCCCTCACCCGGATGCCGCAGACACCCAACTGAGACGGAAACTGAGACGGACCCAAAGCCCCACCCCACCCGCCTTCCCAGCATTCATCCCAAAACCGTGGCCGCCCCCGACTAGTGTCTCCCCCACACCACCGCATGCCCGAAGCCGCCGACATAGATCCCGCCCCCACACCGAAGCAATCGGAGCCCCGCCCTTGCCGCCCACCCTCCCCGGCAACCCTCTGACCTGCATCACAGCACAACCGCCGGTCCGCTGCAAAACACCCTCAGAACAGCCCGTCCCATCAGCCACTGACCTGGGCCTTTACCCTCGGCCCCGC # Right flank : TATTCTGAGGCCGTGGTCGAGCGCATCGGTACGGTCGTGGATGTGTGCGTCCTGCTGCGCAACGACGCGGGGCGCATCCTGCTGATGGAACGCGCCAACACCGGGTTCGCCGACGGCGCCCTCGGCATCCCCGGAGGGCACCTGGAAGTCGGCGAATCCGTCGTGCAGGGGGCGGTGCGGGAGGCTGCCGAGGAGGTCGGGGTCAAGCTCCGCACGGACGACTTGGCCTGCGCGCACGTCGCGCACCACCGCAACGCCCAGGGTGCCACCCGCATCGGCTTCTTCTTCACCGCGTCGCAATGGGAAGGCGAACCGATCAACGCCGAACCGGAGCTGTGCGCCGGCCTGCATTGGGTCGACCCCCGTGCGCTGCCCCTCACGGTGATCCCCTATATCGCCGACATCATCAGACGGGTCCAGTCCGGCGACACGTTCTCCGTCCACGGGTGGTGACCGCAATCGCGGGGCACAACCGCGGTAGAGCGGAAGGCGCTCCGCCC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCATCCCTAGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.50,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1190-61 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000080.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1189 37 100.0 35 ..................................... ATCCACTGGCGCATCCGCTCCGGCGCGGTCACCCC 1117 37 97.3 35 ..........................C.......... CCCCGGTATTCAGGGGCTTCGGCGGCTAGGGTGCC 1045 37 100.0 35 ..................................... GCGCACGCCGAGTCGCGGACGTCGATCAACTGGTT 973 37 100.0 37 ..................................... GGCGGGGGCGGGGGCCGCCCGCAGCTCCGGTCCCGCA 899 37 100.0 35 ..................................... GAGCACCTGGCGGACGGCATGAAGGACATGTCGGA 827 37 100.0 38 ..................................... TGCGGGGACGGGTGCGGGGGCCGCGCGGGCGGGCCGGG 752 37 100.0 37 ..................................... TTCACCCCGCTGAGGGAGTAGCCGGTGGCCTCCACCA 678 37 100.0 34 ..................................... CGTCGGTCGGTCGGTCGGCCGGTCGGTCGCACAA 607 37 100.0 37 ..................................... TTCGGCAGTGGCGGTTCGGGCGGAATGCGCGGTACGC 533 37 100.0 35 ..................................... TCGTGCTCGGGGTCGTCGTCGGGCGGCCCGAAGAA 461 37 97.3 36 .......T............................. CTGTGTGCTGGTCAGCGGTGGTACCCCCGGGCGGGG 388 37 100.0 36 ..................................... TTCAAGTACCGCTGAATGTCGCTCGCCCCCTCGAAC 315 37 100.0 36 ..................................... CTTATTAACCATCCCCAGGCACCGTCCTCCCCTCCC 242 37 100.0 35 ..................................... ATGGAGATCCTCGTGAACCACGTCGAGCACCTCGG 170 37 100.0 36 ..................................... CTCGAATACGGCGGCACCACCGCCCAGGACTGGGCC 97 37 94.6 0 ...............................TA.... | ========== ====== ====== ====== ===================================== ====================================== ================== 16 37 99.3 36 GTGGCAGCGGCCCGCAGCGGCCGCTGAGGATCGCAAC # Left flank : GCCTATCCGAGCGGAAACTCGCCGAACGTTTCGGCCGCTCCCGCCGCTGGGCGCGGAGTGTCATCGCGAAGGCCGCCACCGAGAAGCCGGAGACACCGCAAGACACTGCGCGATGCCAGCCTGGCTCCTGACCTTTGGAGCCGAGGTAGAAGGTCTCCCACGCGGCGAAACCGCATGCGCCAGGGCATTGAGACGTTGGGTGGTCGATGCTTCGGCGCCGGTTCCTTCCGGAGCGGAGCGCCAAGCTGTAGACAAGGGGACGCGGAGCCGGCGGCCAGCCCTACCTTCGCCCGGCTGCGTTGGTAAATCGCTCAACGGAACTCAAGTCCGCATGGTGCAATACTGGAGGCCGCCCTGTCTTTCGAACGCTTAGGAACCTGTAGTGCACACGAAAGAGCAGGCGGGTTCCCAAGCGACTTTGGCTGGGTTGCTGCCTGAGTGTCGGGTTTTTCCTTCACGTATATGCGAATGCGGAAGCATGTTCTTGCTGTTCAGAGACC # Right flank : CAGCATCGACCGGTGGGTGTGGGAACTGCTCGGCGGGTGGCAGCGGCCCGCAGCGGCCGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAGCGGCCCGCAGCGGCCGCTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.00,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 14338-13699 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000080.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14337 29 100.0 32 ............................. TCCTTGGACTTCCGCATCGCCAACATGGCGTG 14276 29 100.0 32 ............................. CCGACCTGGGGGCCGAGCCAGGCCACCACTTC 14215 29 100.0 32 ............................. TCGTCTTCGCGCAGCGTCCCCGACCCGGGCCG 14154 29 100.0 32 ............................. AGGCGGATTCCGAGATCGGGGAGGACGTCGAC 14093 29 100.0 32 ............................. GGGTCGAAAACCTCGGCGTCGAACCCCTCCAC 14032 29 100.0 32 ............................. TGCGGGCTGCACGCCACCACACTCCACGGCGG 13971 29 100.0 32 ............................. AAGCCCGTCGCGGAGATGACGCCGGACGAGGT 13910 29 100.0 32 ............................. GTCCTCTTCTGGGAGTCGGGGTCGACCCACTC 13849 29 96.6 32 ......T...................... GTGATCGGCCGCGACATCGAGTCTCGCCGGGA 13788 29 96.6 32 ....................A........ CCCAGCTTGGCGTGCGGCGGGGCGAGGGCTTC 13727 29 93.1 0 ...................C....C.... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GAGAGCCCCGCGCACGCGGGGGTGGACCG # Left flank : CGGGGTCAACTACGGCGACGGTGGCGGTGGCAGCGGTGGCAGCGGTGGCGACAGCGGCGCGGCCGTGCCGGCGCCGGAAGCTCCCGAGGAAGGCGGCTGACCATGGGGTCCATGGTCGTCATCACGACGACGGCGGTGCCCGACCACGTACGGGGAGCGCTGTCGCGCTGGATGGTCGAGCCGGCGGCGGGGGTCTACGTGGGAACGATGAGCGCCCGAGTCCGCGACGAACTCTGGAGCGCGGTCAGCGCCTCGGTGGGTGAAGGAGCAGCGGTGTGTCTGCACCCGGCCGACAACGAGCAGGGCTTCGAAATGCGCACGGCCGGAGAGCGGAGACGGGAGGTAGTGGACTGGGAGGGGCTGAGGCTGGTGCAGTTCAATCCACTCACCGACCCCCTCGACGGATCAGGGCCGCTAATGGCGATCCCGGAGGGATGGTGACACGCCTTATCCGAAGGTCGCGAACTGGTAACGCCCCGCATCGCCGCAGGTGAATCGCT # Right flank : GGTTAGCATCCGGCAATAGCCGCCTTCGCGCAACGATGCCTGATTTGAGTGGCGATCACCTGCAGAACGGTGGCCGCGGATCGCGCCTCTATTTGATCTGAGGTCTCACGGCGTTTGCACTTCGCTTGCCTGAATAAGGATGAACCGCCTTCACTTGGGGATGCTGCGGACGTTCGACCGGCCGCTCTGGATTATGCGGGTTCCAACGTATCTGTCGGTGGGGGCTGGACTGCCAGGCATGAAACCACCTTGTCCAAGCTCGGCGTCAGGAAGATCTGGAAGATGTATCCGCTGTTGGGGCGGTCGTCGACGCGCCCGATCATCAATTCCGTTTCAGGGCACGCCTCAAGATCGGCGATCGCCTCGGTCGCGCCGATCGTAATCTGGCCTTTTCGATGCATCATTCGCATGCGACGGGAATATATCGATCCGAGCTCCCGCGTCGGTATCGGATCGTTCCATATCTTGAAGTCGGCGCCGCCGGACAGCGCCGTCCCACA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCGCGCACGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 25331-24266 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCRK01000080.1 Nocardiopsis trehalosi NBRC 14201, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25330 29 100.0 32 ............................. GTTTGACCGTGCAGCTGCGGAGTGTCATCGCA 25269 29 100.0 32 ............................. GCCGGCGACTGCCCCAGCTCGTTTTGGAGAGC 25208 29 100.0 32 ............................. TCCGGCCGGGCCGAGGCCCTCCGCGCCGCCAT 25147 29 100.0 32 ............................. CTCTGGCTTCCGTGCTGTGAGCCGTCCTGTCC 25086 29 100.0 32 ............................. CATCCACCCGATGTGCCACGCCTGGTCCATGT 25025 29 100.0 32 ............................. TTCGTCTTCGACCCGGTGCGCCACCTCGCGGA 24964 29 100.0 32 ............................. ACGGCGGCGGCGGCGTGCCAGGTCATCGACCA 24903 29 96.6 31 ............................T GGTGACCCGCCGCCGCCCGCCGCGCACCGTC 24843 29 100.0 32 ............................. CACAGAGCGCAGGTATCTGCGATACGTCGGTG 24782 29 100.0 32 ............................. GTGGCCGGCCGATCGTCCGCGAGTCCTACGGC 24721 29 100.0 32 ............................. ACCCCGCACATGACGAGGCGGACACCATGGTC 24660 29 100.0 32 ............................. CCGCAGGAGGCCCGGCCCGCGCGCCCCCGCCG 24599 29 100.0 32 ............................. CAGGCGCTGTCCTGGATCAAGGCCGGCCGACC 24538 29 100.0 32 ............................. GTGCCGGGCGTCCGGGTCGACTACCGCCGGCC 24477 29 100.0 32 ............................. GGGTCGAACGGCAGGCCGACGGGCGAGGTCGG 24416 29 100.0 32 ............................. ACGCCGGTGCCGGCGGTGGCGATCTCGCCGAC 24355 29 100.0 32 ............................. CCCAGGCCCGCGCCGAGCTGGCCCAGGAGATG 24294 29 86.2 0 .....................AA...T.T | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 GAGAGCCCCGCGCACGCGGGAGTGGACCG # Left flank : GGTGCTTCATTCGCCTACCGCGCCTTGCCCGG # Right flank : GTGGTCCCCTTCGGATCCGAGAGAGACACGCCAGCTTTTTAACGTCTCAACCGCCAGCATCCTTCGTTAGGGGATGATGCGAGCGCGCTCGCATCTCGCGGGCGAACCATGAACCGATGTCTGGCGCTGGGAGGAATGCATGAACGCAGGAGAGCTGGGAGTTCGTGATGTATTTTTCTGGTTCGTTGGAGCGTGCATGGGTGCTCTGGTGATCTTGGCTTTTATGGTTATCTAATCGGACTTTCCCGCTTATGCCGGTTGCCGCCGTTGTGGTCGGCGGCAACCGGCTGCTCCCACGTTCGTGGGGCGTGGTTGATCGGTTGGACGGCTCAGCCGCCTGCATCCGGTCCACCTCCGCGTCGGCGGAGATGATCAGGCTATCGCTGCGCCTGGCACGAGGGTGTCCAGCTGTCCCATGGAGAATTTCCGTCCGAATGTCGGTGAGTGCGGATACTGTTCCTGGGTCCTGTGTTCGGCTTATGCCGTGGATGGAAGGCTCG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAGCCCCGCGCACGCGGGAGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.00,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //