Array 1 79112-80459 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000018.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 79112 28 100.0 32 ............................ TCTTACGTGCCAGAAGGCAAGAGGACGCTAAC 79172 28 100.0 32 ............................ CACAGTAGTTGTAACCGATTCATTTAAATTGG 79232 28 100.0 32 ............................ GCCGCAGCAACTAATCGACTAGTAATATCTGA 79292 28 100.0 32 ............................ ATTCAGATCAATCGGTACAGGAATGCCGGCGA 79352 28 100.0 32 ............................ AGGAGGCAATGCAGAAGAGAAGCCAAATTCAG 79412 28 100.0 32 ............................ GGTCACTTCGGGATAGAGTACTCCGTCAAGTG 79472 28 100.0 32 ............................ TGATGTTTTAGTATTCGTATCTAACTTTATGA 79532 28 100.0 32 ............................ CGGAAAATTAAATACCTTGCAACTTCGCATGA 79592 28 100.0 32 ............................ ACAATAAATTCCTAGATGCAATATTGCGTTCT 79652 28 96.4 32 T........................... GTATGAGCTTTGGGAAATTTTTGATGCCGCAG 79712 28 100.0 32 ............................ GGCACAAAGGTGACCGAGAACATCGCAACCCC 79772 28 100.0 32 ............................ ATCCGCAGGTTCATTAAACGACACTTGCCAGT 79832 28 100.0 32 ............................ CAAATGGCTCAAAAGTTTATATTTCAAATAAA 79892 28 100.0 32 ............................ AGTTCACTACATTGTTTTCGCCAATTATTGGT 79952 28 100.0 32 ............................ GATTTAGCTGGAGTATTTTTTGTTTTCTGAAT 80012 28 96.4 32 .....T...................... GTGACATGCGCAAAACAAAGACGACTGATGCT 80072 28 100.0 32 ............................ GCTTAAACAGAATCATGGGGCGCTCTGGCATT 80132 28 100.0 33 ............................ TGTCCAGACGCATGGCCCGGCGCAAATCTGCGA 80193 28 100.0 32 ............................ TCATAACAATCACCTTTTATTTATTAACTCAC 80253 28 100.0 32 ............................ TACTACGCCTACTACGAAGGGTATGACTGTAA 80313 28 100.0 32 ............................ AGAGACTCAACCAACGGTTTCCCTCAGTCATG 80373 28 100.0 32 ............................ GTTGCTATAAATTTGGTCCAGTGAGGGACTGA 80433 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AATATTGGCAGAGGAAGCAGGTCTGGATGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATATTTGTCAGCTTGTAGTTATTTGGTTTCTAATCAATAGATGAAGGGATCCTGACACCAATATCTAATACAAACTTAAGGCGTTGGATGAGAAGCGGTGTCCGGGTTCAAAGTGTTCAAAATAATGTTTGAATTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTACAATATCTTAAGGCAAGTTTAGTTGCTCTTATGTCTGTTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGTGCTTTTGTTGTGCCCCAGTTTTGACCCTTTTTTATCATCAAAAAACAACCTATTGATTTAAAAGAAAAATAAAATATCTCCTGAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTAGGTTGTTTGGTATAAATAGAGGATTAATTGCGCAGTCTTGGGGCCAGTAGTTGATGGCGGATGGATTCTGCTAGCTCATCGAGAGAAGGTTGCTCTGGATGTTCATCGGATGTTTCATAGGCTAATTGTGCTTCGGCCAGATAAGTATGTACAGGTTGACCATTGTCGTCTTCCATCACAACGTGATACCAGGGAGCGGAACGCAGGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGCGAGTATTCCACATCAATATCCACGATGACTCCCAAATAACCCAGAAGTTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGTCTTGTATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCCGTACCCGGTGGTTGAAGTCATTTTTTGTTTTAAATTGCAAATGTGACTTCATCTATTTCAGGTTAGCTGTAGTAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 85697-86744 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000018.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0018, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 85697 28 100.0 32 ............................ ATTTCACGACTGAGTGATTGATAGGGTGTAGT 85757 28 100.0 32 ............................ GGCTTTTGCCGAACCCCAGTCAAGCTCTGTAA 85817 28 100.0 32 ............................ AGGGTGACATTACGCCACTGGCCTTTACCATG 85877 28 100.0 32 ............................ CTTGCCAACTCCCACACACTCTACCCGGATCA 85937 28 100.0 32 ............................ ACCGGAGAATGCTTCCATATCTGATGCACCCG 85997 28 100.0 32 ............................ GCCATCCGGGGGCAATAAATATGACTATGAAC 86057 28 100.0 32 ............................ TGTATCAGTATCATTAAACGGACGAGTTGAAG 86117 28 100.0 32 ............................ GTTTTCACGCAGATTAAGCAGAAAGACATATA 86177 28 100.0 32 ............................ GATTTCGCAGTGACCCACAGATTAAAATGTTT 86237 28 100.0 32 ............................ TTAACCTGGTCTACTGCACCAGCATCGATTAG 86297 28 100.0 32 ............................ ATTTCTAACGCGCCGGGTGAAATTGATAACAC 86357 28 100.0 32 ............................ TGCTCATAACATGCTTATTGGGATGGATGAAA 86417 28 100.0 32 ............................ GGATGTTGTAGAGCCGCTGGATTATGAAAGCC 86477 28 100.0 32 ............................ ATAAATCAGCCCTTATCTTGTCGTGCAATTCC 86537 28 100.0 32 ............................ CATGAATTTTTATCCTCTGTTTTACACCTGCC 86597 28 100.0 32 ............................ ATTACTTAGTGTTTGTGTGATCATGAGTTCAA 86657 28 96.4 32 ...........T................ CAGTAAAATTGACCCATGGGGAGATTTACCGC 86717 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.4 32 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAAACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCTGTGAGATAAAAGGTGATAATTTTTGTTGATGACAGAGATCAGTGAATGGCTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGCATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAAGGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATGCCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAACG # Right flank : TAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10028-9880 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000041.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0041, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10027 28 100.0 32 ............................ GACAGGTTGTTCCGCATCTTGCGGATGATGAC 9967 28 100.0 32 ............................ CTGCAAAATCAGTAAAGTGGGTTAGGTCTATC 9907 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTGCAGGAGGGGTCTTATTTACTACAGGAAGCTGGTGGAGCTGATAATGTTGTTAATTTTTCACTTAATGATCGTGTGGCATTACAGTGGGATATTCCGCAAAATAAAACCATTTCATTAAGGGCTAGGGCTGCTACAGCAGGCCCTGGGACTTGGACCACCACTGCAACTTATATAGGGGTATCAAGACCTCGCAATATCGCATTTAGCTACATAGTGAGAGCAGAGTAATGGCTGAAAATACGCTTGATAGCCAGAATATAGAAGTATTCTAGGATATGGGAATTTTGCTTGTTGATGGACAAGCATGTTGGCTGCAAAGGGTAAAATGTAACTGAAAAAATGATATTTCCCCGAACCTAAATTTTACCCTTTTTTAACAGCCAACTATAATTCATTGATTTTTAATGAAATTTAACCTCTCTCATAAAAAAGGTTTTTTTTGCTTTTGGTAAATATATTCTTTGATAGTCAGTGAGTTGGAGTTAATATGTAACA # Right flank : GTCTAATGGAGGTGAAGCCTTTGTTGATGTTCCGGCAAGTGTTGCAGTTAAAGTATTGTTGTTAAACACAATGCTGCAAACAAAAACAAGTAATGCAGAGCTAGCGAGAAAACTAGGAACGCGTCCGCAAGATGTTCAACGTATAGTCTCATTGCGTCACAACACGAAGATTGACACGATAGAAAGCGCGTCAAATGTTCTTGGTAAAAGATTGAATCTCGCTATTAGTTAACAACTTATTATACACGTTCAAAGGCTGCGCATTGCGTGGCCTTTTTTATTGATAGATAAAATTTTCTTTTCCGTCGGTTCTACGAATAGAGAAAATAGTTTTCAGATGTTAAATATAAATGGTTTGGGCATGTTTTCGATTCTAAAATATTTAATTACTTATTGCCGCTAATTATATAAAAATAGTCAATCTCCTAATAAATAGGAATGCTGTATTACTCTTCTTTCTGAACTAGACTTTGATTTTAATGAATTACAGGCGGATTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2028-1518 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000074.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2027 28 100.0 32 ............................ TGTACGGCAGTGAACTTATTGGAATTTAAAAT 1967 28 100.0 32 ............................ AGAAGCGACGATGATACAGCGGTCATTAAATT 1907 28 100.0 33 ............................ TTACGGCCTCTTTGAGTCGCTTGAGATATTCAC 1846 28 100.0 32 ............................ TGGCTGGACGATGGTTTCCTGATAGAAGTTCA 1786 28 100.0 32 ............................ AATTAATCGAACCCATAATGCCAGTTTAGCGG 1726 28 100.0 33 ............................ TGCTATAGATGAAGAAAAGCCGAGCTTAACTAA 1665 28 100.0 32 ............................ TCATGAGCAATGCGCTGGCGTTCTTTTTCAGC 1605 28 96.4 32 ....G....................... GGCAAACAAATGACCCAGCTACTGGAATACGA 1545 28 85.7 0 .......................TT.TT | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGCCTGTTATTTGGGATATTCGCTTGGTGAAAAGTGGCAGGGAAAAGGGTTGATGTATGAAGCTTTACAACCAGCTATCCGTTATATGCAACGCCAACAGGGGATGCATCGGATTATGGCTAATTATATGCCGGATAATCATCGTAGTGGGAAGTTATTGGAACGATTGGGTTTTGAACGTGAAGGCTATGCTAAGAAATACCTGATGATTAATGGCGTTTGGCAGGATCACGTATTAACCGCATTGACAGATGAAAAATGGAGTGGAAAAAGTTGATTGTTAAGCTGCACTGTCACCAGATAAAGTAAATTAGTCATGATGAATTAAATCACCATTGAAAATCTGCCTTCTCCACACCTTATTTTTGACCCTTTTTTAAGGATGGATTTTAATCTATTGATTTTTAATGGAATATTATTTCTCCTGTAAAAAAGGGTTTTTTCATTGTTTTATCAATATATGCTTTAACTGTCAGTAGCTTAAAGTTAATATGTAACA # Right flank : AACGGAGGCAATCATGAGTCATACCCGTTACGAAACTAATGTGGTCGTTTGGGCGAATGAGCAAGCAGCATTATTGCGAGCAGGTAAACTCTCTGAGATCGATATAGTTAATATTGCCGAGAAAATTGAGGACGTGGGTAAGAGTGAAAAACGTGAACTAGCAAGTCGTATGTCAGTTTTGTTGTCCCATCTTTTGAAGTGGCAATTTCAATCTGGGCGTCGTGGTTCAAGTTGGCAACGAACTATTAAAGAGCGGAGAAAAGCGCTGGCATTGCATATAAAAGAGACACCCAGCTTGAAAAGCACAATTGCTGATGAAAACTGGTTTGCTAAAGTTTGGGCTGATGCAGTTTCTTCCGCTATCGATGAAACAGGGCTGGATATGTTCCCGGATGAATGTATCTGGAATATAAATCAGATCTTTTCCCAAGAGTTCTATCCTGAGTAAGCTCCAATGAGTTGACTTATTTTGACGCACTGACTTCGATTGGTGCGTTTTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5799-6788 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000060.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0060, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5799 28 100.0 33 ............................ CTCCTTTCTTAGTAATTTTTCCTAAAGATTCTT 5860 28 100.0 32 ............................ TAGGGATCCCCCTTTATGCGGTCAAGCGTATA 5920 28 100.0 32 ............................ AGGTAGAATGGACGGAAAAAGTTTATCACGAA 5980 28 100.0 32 ............................ ACCACGAGTTGTCAGAAATCACCGCTCAACGT 6040 28 100.0 32 ............................ TCTTCGATGCAGTTCAGCAAATAAGCGTCTTC 6100 28 100.0 32 ............................ TATATTAAGCGAATGGAGCCTGTCCGAATGGT 6160 28 100.0 32 ............................ TGCAAGCCTAATACCTGCTGATTGATTACCGC 6220 28 100.0 32 ............................ AAGAGTAGAACCACTAAAAATAGAACCTCCAA 6280 28 100.0 32 ............................ TTTAAAAAATATTGCGACGAACACATTGGAAA 6340 28 100.0 32 ............................ AGTCACTACCAGTAAACGATGCACATTCAATA 6400 28 100.0 32 ............................ GGCTGAAAAAAACGAAGAGGTTGTGGCTCTTA 6460 28 100.0 33 ............................ AAGGCTAATGCAATTCAAGAATATGCTGATTAT 6521 28 100.0 32 ............................ TCCATAATTCAGCCCTTAGTTTGTCATGCAAT 6581 28 100.0 32 ............................ TCCGGCGCGGCTGGATGAATAAATTCAGCCCA 6641 28 100.0 32 ............................ TTATGATTATGTGGAGAACAGGCCAAATTCCG 6701 28 100.0 32 ............................ ACCGAAAAGGTCAATACCGCCGCAACCACCGT 6761 28 82.1 0 .....................AGC.C.C | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTTCTGTACCTTAAGAGCTTGTCATCAGGACAAAGTTTTCCGTTATTTGTCGAACAAGGGTCAATACAAGACAAACCAATACCGGGAGTTTTTAGCTCGTATGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : CTTGATTGAGTGCGCTAAAAAAGCAACCTTTTTTCTTCTCGATATGCATCAATTGTTGTGCTTTTGTGCATATTCTTCACTATTAACCCATTGATGGTCTTTTTCCCAGGTAAATAGCCACTTACGGGTTGGTCCGGCCATTACGTTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCCACTGGGTGATAGCCTTTGGGAACCATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCATCGGTATAGACACGTTGCATGCAGAACCCTTGAGAAGGGTTCAGGCGATGGTAATAGGTTTCTTCCAAATAGGTTTCCTGTGGCGCATTGTCCGTATCGTGTTTATGGCTGGGATAGGAGCTGGTGCAGCCTTCATCGGTAAAGACTTCGACCACTAATAAGCTATCAGCAGGTTTGTTATCCGGCAGGATATTGTGAACATAGCGTTGGTTGCAGTCGCTCCCACGTTTTTCTGCGTCAATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1052-99 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSFC01000086.1 Photorhabdus bodei strain M-CN4 M_CN4_10_scf0086, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================== ================== 1051 28 100.0 32 ............................ AATCCGAGAGCCATCTGACCAATATCATTGAT 991 28 100.0 32 ............................ TCAATCCACAATATCGAATGATACCGATTAAT 931 28 100.0 32 ............................ AGATGTTAATAACAGGGGAAGCCTTCTTGTAG 871 28 100.0 32 ............................ TTTAGGAACGTTAGCAGATAAAGCAACACGGA 811 28 100.0 32 ............................ AGGAGCTTCCTTGCTCCCGGATGAGCCATAAC 751 28 100.0 32 ............................ TGATGAAATTGCTCGCGTCGCGCGATGGGAAC 691 28 100.0 32 ............................ TGGTTTTGATGAACTGTGAGCATTTGTATATA 631 28 100.0 32 ............................ TATGAGACATTAGCCAGGGACGACCATCAGGA 571 28 100.0 32 ............................ ACTTACCTTAGGGATCGGAGAATAAGACACTT 511 28 100.0 32 ............................ TCTATTATCTTGTGCGTATTTTTGTGCTTCTG 451 28 100.0 56 ............................ GTGGAAACAATTATGTGGTGGTGAAGAGTGGAGTGCACTGCCGCACTGCCGCACTG 367 28 92.9 33 CC.......................... AGATAGCTAGTGCGTTCCTTGCACTTTATTCGC 306 28 100.0 32 ............................ TTAAATGGCTACCATCCATGCTATGCACAAAG 246 28 100.0 32 ............................ GTATTGCTGTAAGTGAAACCTTAAACTTCTTG 186 28 100.0 32 ............................ TTGATCAAGAACAAGCAGATAGAAATGTCTAC 126 28 92.9 0 ....................T...A... | ========== ====== ====== ====== ============================ ======================================================== ================== 16 28 99.1 34 GTGCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATAATAGAGGTATATTCTGGAAGTGAGTCATTATAGGCTTATTAGTTAATAAAACAGGTGAATGAAAATAAAATAATTCATGAGTAGAGGAATTTGATTGAATTGGAGACTTGGTAAATTGGATAACACTGAACTTTTCAATATTTAAATGCATGGTGAAATTAATGCAACTGTTGGTGTGTTGAATGATGTCATTATTGAAAAGGGCAGTGAGATAAAAGGTGATAATTTTTGTTGGTGACAGAGATCAGTGAATGGTTCCATCATCATTGAACATTTTACAGGCAACAATTCTCACTTACTGAATAGATCTTAGGCTTAGGACAGGCGACTTAAGTATGTGATGGTATTTTTGCTGCTACCTTATTTTTACCCTTTTTTTGAATGGAGTTGTAATTGATTGATTTTATAGATAAATTAATTATACCTTATAAAAAGGGTTTTTCACTTTTTAATAGCTATGCTATTTAAAAATCAGCATGTTAAAGTTAATATGTAAC # Right flank : ATAGAAAGTTTTCTTTATTCTCTAAACTATCGAGTATGCTGCCATACAGATAGCTTAGAGCATAATTATTCCTGTTTTGGGAAGGCACTATGCTGTGAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //