Array 1 424979-424291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBU010000017.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 424978 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 424918 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 424858 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 424798 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 424738 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 424678 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 424618 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 424558 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 424498 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 424438 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 424378 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 424318 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : | # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38124-39528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBU010000022.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38124 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 38184 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 38244 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 38304 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 38364 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 38424 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 38484 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 38544 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 38604 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 38665 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 38725 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 38785 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 38845 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 38905 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 38965 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 39025 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 39081 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 39141 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 39201 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 39261 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 39321 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 39381 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 39441 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 39501 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49643-48054 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABTBU010000022.1 Pseudomonas aeruginosa strain 09107 09-107_S96_R1_001_(paired)_contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49642 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 49582 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 49522 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 49462 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 49402 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 49342 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 49282 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 49222 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 49162 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 49102 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 49042 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 48982 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 48922 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 48862 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 48802 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 48742 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 48682 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 48621 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 48561 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 48501 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 48441 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 48381 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48321 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48261 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48201 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48141 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 48081 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //