Array 1 43033-44403 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOI01000049.1 Escherichia coli strain SC319 NODE_12_length_165552_cov_112.772_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43033 29 100.0 32 ............................. AGGCGCGGAACTCCTGGACGAACGCGCTCTGG 43094 29 100.0 32 ............................. ATCACCTTCGGCGCTTACGTCGCCGTCCGTGT 43155 29 100.0 32 ............................. GGGTATATCTTGTACGCGACTGATCCTGATTT 43216 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 43277 29 100.0 32 ............................. GACGTTGCGCGCACTAAGAAAAACAGGTTCGA 43338 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43399 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 43460 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 43521 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 43582 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43643 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43704 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43765 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43826 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43887 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43948 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 44009 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 44070 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 44131 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 44192 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 44253 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 44314 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 44375 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70104-71049 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOOI01000049.1 Escherichia coli strain SC319 NODE_12_length_165552_cov_112.772_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 70104 29 100.0 32 ............................. GAAAGGTTCCGGTTCGGCACACTGGAGAGCGC 70165 29 100.0 32 ............................. GTCACGACTGAAAAAAAACGCGTCACGCGCGC 70226 29 96.6 32 ............................T CTAAAATAGAAATTATTCACGGGGATGCTAAT 70287 29 100.0 32 ............................. TGGCAGATCGATTTTACCGCCAGAATGACAGG 70348 29 100.0 32 ............................. ATTAAGGCGGACGAGGAAAAGGCAGACGTTAC 70409 29 100.0 32 ............................. TTAGGCACAGAAAAAAGGCTACTCAGCGAACT 70470 29 100.0 32 ............................. TATCGACCCCCTTTCTCACGCATCGCCATCGT 70531 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 70592 29 100.0 32 ............................. ATCAGGTAATCGAGACACCTGTCAGCACTCTC 70653 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 70714 29 100.0 32 ............................. TTGTCGGGGATCTGTTCAAACTGACTCATTAG 70775 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 70838 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 70899 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 70960 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 71021 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGGTTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGAGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //