Array 1 1535145-1534515 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP017517.1 Mannheimia haemolytica strain 22650 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
   1535144	    32	 100.0	    35	................................	ACATTGTAGGCAATTTTGTCAATGAATGAATAGCT	
   1535077	    32	 100.0	    34	................................	ACCACCTCCTCCGAGATGGTAGGCAAGGGGATTA 	
   1535011	    32	 100.0	    34	................................	ACCCGCTTGCGGTAAAGCTCTAGGCTCTCACCCT 	
   1534945	    32	 100.0	    35	................................	TCTTAAATCGCTATCGCTCTCTTCATCTGCGCCAA	
   1534878	    32	 100.0	    33	................................	CAATCAAGGCGGCCATTTCGGGGGTAAATTCGT  	
   1534813	    32	 100.0	    35	................................	AGGGATAAGCTCTTCGCCCTCGCTGCATTGCATTA	
   1534746	    32	 100.0	    34	................................	GCTTACATCTAGACAGACGAGCAAGTGCTGAAAC 	
   1534680	    32	 100.0	    35	................................	ACTGACATCGGCGTAAATGCGTGGAAGATTTTCGA	
   1534613	    32	 100.0	    35	................................	TCCGTGTTTGTGGTTATGTTGATGTACAGGCAATT	
   1534546	    32	  96.9	     0	.......................T........	|                                  	
==========	======	======	======	================================	===================================	==================
        10	    32	  99.7	    35	GCAGCCACCTACGCGTGGCTGTGAATTGAAAC	                                   	       

# Left flank :   TTGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAGTATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTGTAAGG
# Right flank :  GGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAAA

# Questionable array : NO	 Score: 9.25
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTACGCGTGGCTGTGAATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-1.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.78   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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