Array 1 153212-152794 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVO01000001.1 Corynebacterium diphtheriae bv. gravis strain 300 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 153211 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 153149 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 153085 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 153021 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 152957 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 152893 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152829 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 40500-42299 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVO01000025.1 Corynebacterium diphtheriae bv. gravis strain 300 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40500 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 40561 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 40622 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 40683 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 40744 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 40806 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 40868 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 40929 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 40990 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 41051 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 41112 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 41173 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 41234 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 41295 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 41356 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 41417 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 41478 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 41539 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 41600 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 41661 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 41722 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 41783 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 41844 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 41905 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 41966 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 42027 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 42088 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 42149 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 42210 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 42271 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //