Array 1 1991625-1990944 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622241.1 Enterococcus italicus DSM 15952 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1991624 36 100.0 37 .................................... GTATGCTTCCACTGCATCTATTTCACTATCCTTACCC 1991551 36 100.0 36 .................................... CAACATCCTTCGCCACTGCCCACCATTCATCATCAA 1991479 36 100.0 33 .................................... AGATCATATTTTTCTCTTATCTCCTGTAAAAGT 1991410 36 100.0 38 .................................... AGCAACTTGTATGCTTCAAGTGGTGTCATTCGCTTAGT 1991336 36 100.0 34 .................................... GGAAAATTTAAAAGAATTGACAAGTGAAGCATTA 1991266 36 100.0 35 .................................... TCACGAACAACAAAATATGGTGCACGGTATGTGTA 1991195 36 100.0 36 .................................... CTATCACTCACTTATTCAAATTAAGGTGGTGCTTTG 1991123 36 100.0 36 .................................... ATTAAGTAAATCATATCTCCATCCACAAATTCACGA 1991051 36 100.0 36 .................................... ATCTCGCTTATAGCCTTTTTTTCATTTGTCATCAGA 1990979 36 83.3 0 ............................C.A.ATGG | ========== ====== ====== ====== ==================================== ====================================== ================== 10 36 98.3 36 AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Left flank : TGCAAGAAGTTCCACGTTATGCTAGACTGAATATTCAATCTCCAACAAGTTTTAAATCTAATGGGCAATACGATATTTTTCCTGATCTGAAAAAAATTTTTCGTAGTATCATGCGAAATACGGATACTTTTTTTCCAGAGTATCGCTTATTTGATGGTGATACTTTAGAATATTTGGTTAGCAAAACAAAAATCGTAAATTATCAGCTAAGAAGCACGAAATTTCACCTAGAGGGAATTAAGATTCCATCCTTTCAAGGGAATTTTACAGTCCAACTGAATGGCCCATTACCTGTTAAGCAATTATCGTATTTTTTACTGACATTTGGGCAGTGGACAGGCATTGGAGTAAAAACAAGTTTAGGAATGGGAAAATATTTTCTAGAATAATGTTGTCCGTAAGCAGGACAAACTAGCAGTACATACTAAGTCATTTGTCCTGTTTGCGGACATGGAAAACTATCTGTTTACGCTGATATGATCGCCTTTTCAGGGCTATCT # Right flank : TTCTTTTGTATTTTTATTATCGATTAACACGTTTGGACTGTATTTTTTTTCAGGCATGGTTTAAACTAATGAAAAGCTTCAACATTAGGAGGAATGGCAATGAGTGAAAAGAAAGTAAAACCAGTAGGACCATATTCACGGTCTAGAAGAACCAGTGAACTTGTTTTTGTATCGGGGCAGTTAGGAATTGATCCTGAGACAGGGGCTTTAGTCGATGGTGTTGAAAATCAAGCGACGTTTTCATTAAAAAATGTGGCAGCAGTTCTTGAAGAAGATGGCCTAACATTAGCGAACGTAGTGAAGGCGACTGTCTTGTTAGCAAATATTGATGATTTTCAGGCAGTGAATGCGGTGTATGCGACGTTCTTTGAAGAGCCTTATCCAGCGAGAAGTGCCTTTGCAGTGAAAGATTTACCATTAGGCGCACTAGTTGAAATCGAAGTCATTGCTGAAAAAACACACTAGCATTACCTTAAAAAACGAATGCCAAAGTGTCGAAT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 2001587-2000414 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622241.1 Enterococcus italicus DSM 15952 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 2001586 36 100.0 35 .................................... ATTGCGTATCCAAACTCTTTATCTTTAAAGTATGT 2001515 36 100.0 34 .................................... AAATAGTTGTAATTATCTATTGCTTTGTCTGTAT 2001445 36 100.0 35 .................................... TCCTCTTACTTTTTCGTTTGTCATTTTTATTTCCT 2001374 36 100.0 33 .................................... GACTTATGAAAGCTATTAAGTTTTCAAGTTGTT 2001305 36 100.0 35 .................................... ATCGTCACAGAAATCTTAGCATTTTGGTAAGTTTT 2001234 36 100.0 37 .................................... TCAATCCACGTTCTACCATGATTCTTGCAATGATGTT 2001161 36 100.0 35 .................................... TGCTTGTGCCATGATTCCGTTTGTGCTTTGCTGTT 2001090 36 100.0 33 .................................... GATACTAATAGCAATATGTTTGATATGCGTAAA 2001021 36 100.0 36 .................................... GAAGCACTGAAAACGTTAAAAGAAATTGACAAAGAG 2000949 36 100.0 35 .................................... TTTTAGTATCTAATTTCATCTTCACCAGTCAAAGT 2000878 36 100.0 35 .................................... TCAAATGCTTCATCGTCATATTGTTGTAAGTATTC 2000807 36 100.0 36 .................................... AGGACTTGACCAGGATAAATCAGATTGGCATTTTTG 2000735 36 100.0 36 .................................... GCCGATGTTAAGCCATTGCTGTTTTCCCAATGATCT 2000663 36 100.0 34 .................................... ACTCATTACGTACAATTCATTTTCTTGGTTCACG 2000593 36 100.0 36 .................................... ACTGCTTTTTTGATATTTTTCACTTTAATGATTCCT 2000521 36 100.0 36 .................................... GTCTAGAAATGCATCGCTATCTACAATCGTTCTTGC 2000449 36 86.1 0 ..............................ACTT.T | ========== ====== ====== ====== ==================================== ===================================== ================== 17 36 99.2 35 AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Left flank : CCGTCCAAGATTTAGAACCCTTCCCGCAAGTACGATTTACGCAAGAAGACAACCATTACACCTTCTTTTCAGAGGATATCTTGGACTTCTTTGATGCAGAACAAGTCATCCATACCACTGATCGTGCCACCTTGGTCGGCATCTTACATGAAACAGATGCTTATGGTTCCGGTTCAGGTCTTGTGAAATACCCCGAAAGGCAAGGCATTAAATTAATTCCTTTAGAAAATGAGGAAGATAACCAGCTCGTGTTGATTTATAAAAACCAAGCAACATTCTCATTTTTAGGCAAGAAGTTTATTGCCTACTTAGAAGAGTACTTGGACAGTATGAGGATAGTGAAATAATCGTTTTCCTTAATTATTGTTTTGTGTATAATAAAGTTATCAGTTTGTCCGCAAATTGGACAAATGAGCTAATCTATTCTAGCAGTTTGTCCTATTTGTGGACGTGGAAAACCAGCTGTAGACGCTGATATTATCGCCTTTTCAGGGCTATCT # Right flank : TGATTTTGTTTATGTGAAGGAGTTTGTAATGGGGGAATGTAAGCGATTTAAAAAATAACCAGAGGGAGATGATAGAAAATGAAGGATATTATTTATGTTGAACGAAAGTATTTTTTAACCGTAAAAGGGGAGTCCATAAAATTCGTAAACGTGATGGACAAAACGGAAAAATACATCCCGCTTGATGATGTGGAATGGTTGATTTTTGATCATCCTAGTAGTTATTTTTCAAACAAATTAATTACTGAATGTATGGTTAGAGGGATAGGTGTGCTTTTTTGCGATGGCAAGCATTCACCAGATGCTATTTTACTGAATCAGTTTGGACATCGACAAAGATTAACGCGAGTGAATCATCAATTATCTGTATCGAATCGAACAAAAAAACGATTATGGAAGAAAATAATCAGGACCAAAATTCATAATCAAGCCCAATGCATTGATCAATTAACAGATAACCAGAAGAGCAGAGATTACCTTATGTCTCTGTCAAATTCTGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGGAACCCACCCCGTATAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 3 2038237-2036675 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL622241.1 Enterococcus italicus DSM 15952 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 2038236 36 100.0 30 .................................... CTCACTCCTTTTTTTGATGACTTTGACCTT 2038170 36 100.0 30 .................................... TTATTTCTTGTATTGTGTTTCGCACACCTT 2038104 36 100.0 30 .................................... GATGTTGTTTGATAGCCAACCAGTGTCCCA 2038038 36 100.0 30 .................................... GTTAAATAGCGTGCTTATGGCGCTAGGGTT 2037972 36 100.0 30 .................................... AAACTGCAAAAAAAGAATTTACAATAGTCA 2037906 36 100.0 30 .................................... AATTTGATCTATGTTGAAGGTCGTAAGTAC 2037840 36 100.0 30 .................................... CCCCAGCATGACAAATCCTTTACCTTTCGT 2037774 36 100.0 32 .................................... ACTATACCCTTGTTCAAAAATGGTGATATATC 2037706 36 100.0 30 .................................... TTACGGTGTCAGGAGTTACGCCGTACAATT 2037640 36 100.0 30 .................................... CATAGCTAGTGAGAATATCCATATCGTATT 2037574 36 100.0 30 .................................... CGACGAGTTGATTTTTCCTTCCGAAAACGG 2037508 36 100.0 30 .................................... TGATAAAGCAAAGAGATCTAATTTTAAGAT 2037442 36 100.0 30 .................................... TCTGTAAAGGATATCCACGACACTGATAGT 2037376 36 100.0 30 .................................... TCACGTTTTTAAACGCTTCATATAGACCTG 2037310 36 100.0 30 .................................... AAATTTACGCTTTTTACGCACAATATGCCA 2037244 36 100.0 31 .................................... TGGCGAAAAATTGTTGCCGGTTGTCACGCCG 2037177 36 100.0 30 .................................... CGTTTTGTGTGCCTGTTTGTACATAAAAAT 2037111 36 100.0 30 .................................... AAGAAAAAGCAAGAATCATCCTCGAAAATA 2037045 36 100.0 30 .................................... ATTTGGATAAGCCGCCATCCATAGTGAGTT 2036979 36 100.0 30 .................................... CGATTGTAGAGAGAGCAGAAAGACTTGCAA 2036913 36 100.0 30 .................................... TGGAAGTATTTTCAAGATGGGCTTTGATAC 2036847 36 100.0 30 .................................... TATTGTGTGCTTACTATGACGAGTTTTACT 2036781 36 100.0 30 .................................... AAATGCTTCTTCCAGTTGCACACGTTGGTC 2036715 36 88.9 0 ..................T.......T...T.T... | G,TTG,A [2036677,2036685,2036690] ========== ====== ====== ====== ==================================== ================================ ================== 24 36 99.5 30 GTTTTAGAGCTATGTTGAATCGAATGCTTCCAAAAC # Left flank : AGTTAAATCGATGATTGACAAATTGACTTCCACAATAACCGAAATCATCAGTTATGAATTGATTGAAAATGAAATGGATTTAGAGTATGACGAAATTACTATACAGGAACTTTTTAAATCATTGGGGATTAAAATTGAGGTGAAGAGTGATACAATTTTTGATAAGGTAATTGAGATTATCCAAGTTTTTAAATTTTTGACTAAAAAGAAACTGCTAATTTTTATTAATGTGGGTACTTATTTAACGAAAAAAGAAATGAAATATCTAGACGAATATGTAAAATTGAATCATGTTAAATTATTGATGATAGAGGGACACAGAGTAGAGGGGATGCCACAGTATATTTTAGATTCCGACTACTATTTGGATTTAGATTTATAGATAAATAATTGTTCCTTGACAATTGAATATTTGATAAAATTTACTGCATTCGATTCTGAAACTTTGCTAGAGTGAATAGCGCGATTACGGAACTTTGGAGATAAAAAATATCTGCGAG # Right flank : TTGAATACATAGGCTATGTAAAATATCTTGTATAATCAATACAGAGGATAGAATCTCTGAGAATAATCACCCTCAAAAAGGAGAATAATATGGATTATACGCGTTTATACAATATGTCATTTGCATCTGTTTATGATCTTTACCTAAAGAAAATTGAACGGAAAGAACGTACCAAAGAGGAATTGGATGCGGTATTGAGTTGGCTTACTGGTTTTTCAGATGAACAGTTTCAGACATTGATGACGGAAAAACACACGTTAAAAGAATTTTTTGAAGTGGCCGAGATTCATCCTTTAGCTGGATTAATCAAAGGAAAAATTTGTGGTGTGCAAATTGAAGAAATTCAAGATCCATTGATGAAAAAAATTCGTTACATGGATAAGTTGGTTGATGAATTAGCTAAGGGAAAAAAGATAGAAAAAATTTTGCGCACGAAATAAAGATGCCTCGAGTAGGACATATTTAATTTTTTGCTAAGAGACTGAATAAATAGCGAGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGAATCGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGATTTGAATGCTTCCAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //