Array 1 55594-53911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQI010000023.1 Xanthomonas campestris pv. parthenii strain NCPPB 3888 scf_24030_23.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 55593 31 100.0 35 ............................... GCGCAGCTGCTGGGCTTCGCGGCGCAAGCGCGCTG 55527 31 100.0 35 ............................... GCTGAATCCCCCGCAGGGCGAAATCCCCACGCCCT 55461 31 100.0 35 ............................... TGTTACAGACTTCTGTGAACATTCCTGCATGAAGT 55395 31 100.0 35 ............................... ATTCGCACCGGTGCCGCCGCAACGGCGCCCATCAT 55329 31 100.0 34 ............................... GACTATGCCGCTGATACGGGGATATTCACCTGGA 55264 31 100.0 35 ............................... GCATAATCGGCCCGTGGCTGAGCAAGGTTGTACGC 55198 31 100.0 35 ............................... CACTTGCGCGGGTCATCGAGCACAGTCGCCAAGCC 55132 31 100.0 35 ............................... ACCGGTCCGGATGGTCGCGAGCGCATCGGCGTGAT 55066 31 100.0 35 ............................... CAGATGATCGTGATCTGCTGCGCGATCGGGTCTGC 55000 31 100.0 34 ............................... GCGGTGAACGTCGCCGACTCGCTCATGATCGTGG 54935 31 100.0 33 ............................... AAGAAATCGCCGACGTGATCGGGCGTGATGCTG 54871 31 100.0 34 ............................... CGCGCCAGAACTTTAAAGACGGCGCGCGGCGGCT 54806 31 100.0 36 ............................... ACCGCGAACCCGATCGTGCGCAGGCCGTCCGCGTGC 54739 31 100.0 36 ............................... CTTCGCTGTCAGCGCGCGGTCACGCGCCTTCGCCGC 54672 31 100.0 34 ............................... GCGATAGCCTGGCCGATCTGCGTCAAACCATCTT 54607 31 100.0 36 ............................... TGCAACAGCTGTGTGAGGAAGCCTGTGGTGGTCGGG 54540 31 100.0 35 ............................... GCGCCGCAACCACAAGTAACGAACTTCGTTGGCCT 54474 31 100.0 34 ............................... TCGATCTCGGCGCACTTCTGCTCGAGCGCATCAG 54409 31 100.0 35 ............................... GATAGCTCAGGGTGTCGGCGCGAAGCGTCAAGCCA 54343 29 93.5 35 ........--..................... TGGGATTTCGACTTTACCCCGGTTTACCCGGCCGA 54279 31 100.0 35 ............................... CCGGTCGACGGGTCGACTTCGGTCTTCGCCGGCGC 54213 31 96.8 35 .......T....................... ACGCTCTGACAACTTAAATTTGGTATGCCGGGACC 54147 31 93.5 42 ............TC................. ACTACAACGCAGAAATCTGCCAGTCCTGGCGATCGGTGACCG 54074 31 96.8 35 ..........T.................... TGGCAATTCTCACCCTGCCCATCTTGCAAAGAGAG 54008 31 83.9 37 ...A........T...TT..........C.. AGCATTCATCGGGACACAAATGGCGAAGGCTACTGCG 53940 30 83.9 0 ...CT.......G..........-.....C. | ========== ====== ====== ====== =============================== ========================================== ================== 26 31 98.0 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAATGACACGGCTCAAGTCCCATGATGATTCTGGTCAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAACGCCTGCGCAAAGTCGCCAAAGCCTGCCGTGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAAATTGAAGTCGAACCTGCCCAATGGACTGAATTACGGCAGCAACTCTGCGACCTGATCGACCCGGCCCTAGACAGCCTGCGGTTCTATCACCTTGGCGCGAAATGGGAGGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGTCCACTGATTTTTTGACGCGAACCCCAAGCGTCCCATAAAAACCGGGCAGGTTCGCAGCTTCGTCAAGCAACTGATTTTCAAGACAAAAATAAAAACATAGCAGATTCAAAGGTCCACATGACCACTTCTCGACCGCTTTATCGGCGAGTCCGCGCAACTGCCCGTGTTTTAGCAACGATGGCAAGCCCTTATCCTAAGGGGG # Right flank : AACATGAACATGCTGCCTTAGTAGGCTGCTGAAATACTCTGGATGGACCTTGGCGAATGCACGAGATAACCCAACACGGAACTCCTGCGTGAAATCTGAGGCTACCAATGTTCGTCGGACCCTCAGAATTGGCGGAGAAACTACTCATCTATGCAAGTCGGCAGGCCGAAATTAGTGTTTCAGCAGCCTGTTAAGTTTTCCCGATACGATCGTATCCTCAGGCACGCGAGTTGATTCTCAGCCAAGAGAAGTGATGCGCATGAATTTGGCTAGTTGTGCCAGTGTGGGCGCGCGGATAGAGATGGCACGCCTGGTTGCGACGCATGCAATCCTGGATACCTCTATTTGACGATGATGCTTTGCGGCGTACCTGCAGGCTTGCCGTCGACCATGACCTGCGCAGTGTAGGTGCCGGCCGGCCAGCCATCTGGCTTGCTGAAGCTGATGTTGGTGGTCTCTGCGCCCGTGGTGGTCAGCGTGGCGCTCTGCTCGCCGGCCAC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45831-40701 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGQI010000005.1 Xanthomonas campestris pv. parthenii strain NCPPB 3888 scf_24030_5.contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45830 28 100.0 32 ............................ CCGGACGACTGGCTGTTTCGGCCGATCGAGTC 45770 28 100.0 32 ............................ TTGACCCAAATCCTTGCCTCAAATCGCCCCCT 45710 28 100.0 32 ............................ ATCAAGTGGCAGACCGGAAAGGAGAACGCGAA 45650 28 100.0 32 ............................ GTTATCCCAGCAATGGCGGAGCGATCAATGGT 45590 28 100.0 32 ............................ AATCCCGATGGCTATGAAGTGCCCGTGCATCG 45530 28 100.0 32 ............................ ATGATCGGTGGCAGGCCTGCCACCACGATGAT 45470 28 100.0 32 ............................ ACCACGTGGGCGGGCGCTTTTACGATCTAGGC 45410 28 100.0 32 ............................ AGCGTCAGCAGTTGGAGTGTGCGAGTGTTACG 45350 28 100.0 32 ............................ TGCTCGATGCAACGCACGATGACGTGTCGCTG 45290 28 100.0 32 ............................ AATGCGGCCGACGCTAACGCGGCCATGCAAGA 45230 28 100.0 32 ............................ TGGGAAACATCACCCGGCACCACCGGATGCCG 45170 28 100.0 32 ............................ TGGTGATGGCTGGTCTGACGCTTTGGGCGATG 45110 28 100.0 32 ............................ ACGGCTTGCTGCGCTTTCCAGGTGTCCATCGG 45050 28 100.0 32 ............................ TGATCCCAGGTGTTGATGCCCGCGGGTGGCGA 44990 28 100.0 33 ............................ CGGCACAGCAGCAGGCGCGGGCTGTTTAAAATC 44929 28 100.0 32 ............................ TTCCAGGGTGACCGGGTGCGGCGTGAGCACCA 44869 28 100.0 32 ............................ GACGCGCCGGGCGGGGAGGCGATCATTTACAG 44809 28 100.0 32 ............................ TTCACCCGTGCGTTTGCATCTGCCCCAGTCGT 44749 28 100.0 32 ............................ GCGGTGACAAAGACGGGATGAGCCGGCTGGAA 44689 28 100.0 32 ............................ TTGGCACGCAGATCCCGAAACTGAAAGTCGCC 44629 28 100.0 32 ............................ TGCTTGGCGCAGAAATCAGTCGCTTCCTGATA 44569 28 100.0 32 ............................ TCGGCGATATGGCTGACGTACGATTTCGAGTA 44509 28 100.0 32 ............................ TGAGGAACCGGACGGGTCCGGAACCTGCAAAA 44449 28 100.0 32 ............................ AAACTTGAACCTGTTTGCGGAGCAGTAAAAGC 44389 28 100.0 32 ............................ AGCTGGCAGGTGTCGGCAACAGCCAGCAGCCC 44329 28 100.0 32 ............................ GCAACGGGCTCGCTTCTCTATCGCGTTGGCGT 44269 28 100.0 32 ............................ CCGGCGTAGCAGTGACCATCCCCTGGTAGTTG 44209 28 100.0 32 ............................ TTTCGCCATTCCCCCGCGCCCGATCCCTCCGG 44149 28 100.0 33 ............................ GAACAAGTTCCGCGCCTTCGTTGGCGGATTTGG 44088 28 100.0 32 ............................ ACCGATGCGGCCGCGATCCAGGCTGCGGGCGA 44028 28 100.0 32 ............................ AACTACGATTGCGGATGTCAACTTCATGAAAA 43968 28 100.0 32 ............................ TTCGTCGCAAAAGTTCCTTCGACGCCATGGAC 43908 28 100.0 32 ............................ GAACGTCGGTATGGACGAGGGACGTGGACGAC 43848 28 100.0 32 ............................ ACCGTGGGCTCCCTTGTAGCGGGCTGGCACCA 43788 28 100.0 32 ............................ CACCATGCCCGTTTGAAGCCCTCCAGCGACTT 43728 28 100.0 32 ............................ AATTCCGCGCCCGCGCTCTGGAGTACGGACTA 43668 28 100.0 32 ............................ AACCGGGGCCACGGTGGTGCGGGCCAACTGGC 43608 28 100.0 32 ............................ TATGCGGCGCTGGAGGGCTAATCCATGCCAAC 43548 28 100.0 31 ............................ TGGCCACATTCCGCCGAATCGCATGCTGCGA 43489 28 100.0 32 ............................ ACCTGGCAGACGGATGACACCAGCCAGTGCGT 43429 28 100.0 32 ............................ GCGACCGTGGCATCGCCGTCGCTGCGCATGCG 43369 28 100.0 32 ............................ TGGCCGATTCGCTCGGGGCCACGGAAAAGCAA 43309 28 100.0 32 ............................ TGGATCATGGCCCCCGCCATCTGATCGGCGAC 43249 28 100.0 32 ............................ TTAGGCCCGAGCGCCTTGTTGATCACGATCGA 43189 28 100.0 32 ............................ AAGCGCGTGCGAATCATGCAGCACCGCTGGCG 43129 28 100.0 32 ............................ GCGTTGTCGCGGGACTTCTTGCCAGGCATTAG 43069 28 100.0 32 ............................ ACCAGGGGGTTGAATTTCGTTTCCAGCCACGT 43009 28 100.0 32 ............................ TGATAGATAATCTGAAATTGCTTCTGCGTATC 42949 28 100.0 32 ............................ TTGTTACGCAGCAGGCTGATAAACGAACCGGT 42889 28 100.0 32 ............................ GCCAGTATGACCAGCTGACCGCCGCGTCCGAC 42829 28 100.0 32 ............................ AGGCTGGCGCCGCAATCGTCGTTATCCGTGTT 42769 28 100.0 32 ............................ ACGCGGAGGCAATCTTCCACTACCGGTCGCAC 42709 28 100.0 32 ............................ TGCGCCATGGCAGCCTCGCTGAGGCCGTATTC 42649 28 100.0 32 ............................ ACAAGAATTCGATACAGACCGCGCCCGTATCG 42589 28 100.0 32 ............................ GTCTCCAGGGCCAGCAGGAACGCCAGCCCGAT 42529 28 100.0 32 ............................ TTTACCGTGGCACGGCGCGCAGCAAGGGCGCG 42469 28 100.0 32 ............................ GGTAGGCGACAGGCCGAACAAACCGTGTTCCG 42409 28 100.0 31 ............................ CTTGGTCAGCCGCCAGCCTGGCGGCGGGAAA 42350 28 100.0 33 ............................ TGGTCAAGTTCTTCAGCCATTACGCTACCTTCC 42289 28 100.0 33 ............................ TCGAAACCTCCGATTTCTTCCACTTCTTCTCGT 42228 28 100.0 32 ............................ TTGTCGAACGTCGGGCGCGCAACGGCCTGGCC 42168 28 100.0 32 ............................ ACCACCCTGGTCACAACCTCGAGCGGACCACC 42108 28 100.0 32 ............................ AATCGTATCCAGCAGCAGTTCTACGCTGCCAT 42048 28 100.0 32 ............................ GCGGTGACAGCCGTAGCCTGGGTCGGCGTGCC 41988 28 100.0 32 ............................ TCCGACGAATTGGCCTGGAGGCGATGGGTTGA 41928 28 100.0 32 ............................ GTCTCCACCTACGACGCCAAAAGCTGCCAACA 41868 28 100.0 32 ............................ TGATCCAGCGCTTCAGCAATGCCGGCGAGCTG 41808 28 100.0 32 ............................ CAGCGCGCCACGCTGTCCTCGCGCTTGAACGA 41748 28 100.0 32 ............................ GCAGCGGAGGGGCATGGGCTGGAAATCAGACC 41688 28 100.0 32 ............................ ACCAACGCCACCAGCGGCATCGCGGTCGAGCG 41628 28 100.0 32 ............................ TGGTCGATGTGGCGCGCATCCTCCTCGTCGAA 41568 28 100.0 32 ............................ ACTCCACTGGATGCGGGCGAGCCACTTGCGCA 41508 28 100.0 32 ............................ ACCCGATTCCTCCAGCACGGAGACGCGTGCAA 41448 28 100.0 32 ............................ CGGTTGCCGGGCAGACGTGGGTGGAGTTCGGC 41388 28 100.0 32 ............................ ACGCTCTGCGCGCGATGTGCGCAGACCTCATC 41328 28 100.0 32 ............................ CCCAGTCGGCAGCGGCGCCATGACCTGCACGA 41268 28 100.0 32 ............................ TGAAAAAGCAGACGGGCGAGATTGACGCAGCC 41208 28 100.0 32 ............................ GCTCACCCCGCGTGGCGCCTGAGCAGCGCCGG 41148 28 100.0 32 ............................ AGGCACCCTGCTGGCCGCCAGTCGCAGTCAGG 41088 28 100.0 32 ............................ TGTGGAACTGGGCGCGAGGTAAGGGCCTGACG 41028 28 100.0 32 ............................ ACCCGGCCAGAGCCGAGGTATCGCACGTTGGC 40968 28 100.0 33 ............................ AGTACAAGGACATCGGTTTCGCCCCGGATCTGC 40907 28 100.0 32 ............................ CACAACCACGGTTGAGAGTGGGCGGCCCAGGC 40847 28 92.9 31 .............C..........A... ATCACCGCGTAGCCGCCGACCTGACCGACCA 40788 28 82.1 32 .G......T..TA.........T..... ACCGGTACAGCAGCGGGCGCGGGTGGGACAGA T [40784] 40727 27 78.6 0 C..-.......T.C......AC...... | ========== ====== ====== ====== ============================ ================================= ================== 86 28 99.5 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CGTTAGATACAGTGATGGCCCTGCCTTGGTTGCAAGGCATGAACGATCATCTGGCAGTATCGGACATCAACGCGGTGCCCGCTGACGCACAGCATCGACAAGTGACTCGGGTACAGGCCAAAAGCAGCCCGTCGCGCCTGCGCCGCCGGGCGATGCGGCGTCACGGACTGGATGCGGAAGCGGCGCTACAGCGCATCCCGGATTCGGCCGCCGAACAGCTGCAACTGCCCTTCGTGGTCCTGGGCAGCCGCAGCACGGGGCAACCGTCGTTCCCACTCTTCATCCGGCAGGGTCCACTGTCGTCTACCGCACTACCGGGCAGCTTCAACAGCTACGGCCTGAGCCAGGACGCCACCATCCCCTGGTTCTGACCCTTTTTCCAAGAGCACCACGCTTTTCCTTAAAATCAACGACTTGGCGGGCCTCCTGAAAAAAGGGGCCCGTTCTTTTTGAGACGCGCTTTTCCTGTAACTTCAACGGGTTGAGTGACTTTTTGTCTT # Right flank : TCTGCCCCGCAGGCATTGCTCGATGTATCGTATTTCACTTCGTGCAGATAGCTTGAGAGCCGAATTGGTAGGCGTTGCGGATTGACGTAGTTAAGCGGTGTAGACCATGCAGAAAGGCAAATCAGGATATTGACCAGCAGACATAAAGAGCGCAGCTGTGCAGATAGCGAAGCTAGCGATGCAGGCGAATCCATAATCGACTCCATAATCGACTCCATCAGCAAGACGGGATAGCCGATTGGCTACCCCGTCGTGACTGCTCGGCTATTGCTTCTGGAAGATCACTCGGTCAACCCACGGTTTTCCAGCAGCGCCTTGACGCTGGGATCCTTGCCGCGGAAATCGCGGTACAGCGTGGCCAGGTCGACCGTGTTGCCGCGCGAGAGGATCTTGGCGCGGAAGGTGTCGCCGTTCTTGCGGGTCAGGCCGCCGTTTTCCTTGAACCATTCGAACGCATCGTCATCGAGCACTTCCGACCAGAAGTACGCGTAGTAACCGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //