Array 1 31331-33982 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYH01000055.1 Cronobacter sakazakii strain MOD1-GK1326 csakGK1326_contig_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31331 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 31392 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 31453 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 31514 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 31575 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 31636 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 31697 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 31758 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 31819 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 31880 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 31941 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 32002 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 32063 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 32124 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 32185 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 32246 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 32307 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 32368 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 32429 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 32490 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 32551 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 32612 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 32673 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 32734 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 32795 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 32856 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 32917 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 32978 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 33039 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 33100 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 33161 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 33222 29 100.0 32 ............................. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 33283 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 33344 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 33405 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 33466 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 33527 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 33588 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 33649 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 33710 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 33771 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 33832 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 33893 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 33954 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.6 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GAACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19621-19769 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYH01000083.1 Cronobacter sakazakii strain MOD1-GK1326 csakGK1326_contig_83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19621 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 19681 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 19742 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20205-21332 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEYH01000040.1 Cronobacter sakazakii strain MOD1-GK1326 csakGK1326_contig_40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20205 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 20266 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 20327 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 20388 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 20449 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 20510 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 20571 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 20632 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 20693 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 20754 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 20815 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 20876 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 20937 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 20998 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 21059 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 21120 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 21182 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 21243 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 21304 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : GACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //