Array 1 167680-166491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNA010000003.1 Aerococcus sanguinicola isolate As-34-B09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 167679 28 100.0 33 ............................ CGCACGGAGAACGTCAAATAAAGAGGGGCTTAT 167618 28 100.0 33 ............................ TCACAGTGGAATGCCGTGTAAGGAACGCCACAG 167557 28 100.0 33 ............................ TCCGGTCATCAAGGACATCGAACCCGTAGACAA 167496 28 100.0 33 ............................ TGTGGCAAGTGGATATTACAGGGGTGACAAAGG 167435 28 100.0 33 ............................ TGGCTACGGCAATTTCAAAGATGGCCCGTAACG 167374 28 100.0 33 ............................ TCAGCTAGACGAGACCACGCAACAATTAAAAGA 167313 28 100.0 33 ............................ TGGCTTTTTTTTGTTTTATGGATTTCAAATCCA 167252 28 100.0 33 ............................ CCTCATCTTCCACTTGTCCTAAAACTTCGAAAG 167191 28 100.0 33 ............................ TACTGGTATTTTTCTTTCTTTCCGGTCTCTTTG 167130 28 100.0 33 ............................ TGATGTCTTCGCTATCGTCAAAGATTTCTGATT 167069 28 100.0 33 ............................ TGTAGGAGATAATCCATCTTTGGAATAGACTCT 167008 28 100.0 33 ............................ CCGTTTGGCCCCACTGGTCGACATGATGTTCGC 166947 28 100.0 33 ............................ CTGTTTGTATCATCTTCGGTCACCCATTTAATC 166886 28 100.0 33 ............................ CCGATTACGAAAATGAACGAAGGAGTTAAGGAG 166825 28 100.0 33 ............................ CATACCCTTGAACCTTATTTGGTTCTAAATCCT 166764 28 100.0 33 ............................ CCAACTTATTTTTTGAACGTTCTACCACATCTA 166703 28 96.4 35 ...........................T TGCTGAGTAGATAGTTAAAGGTAATCTGAACAGAA 166640 28 100.0 33 ............................ CTGTTATGCGCGGTATACAAAGAAGGATACTAC 166579 28 100.0 33 ............................ TATGCTAGCCGCCTACCCAGCCTTATTTTATTT 166518 28 75.0 0 .................A.A...TCCTT | ========== ====== ====== ====== ============================ =================================== ================== 20 28 98.6 33 CTTCTTCCCGCACACGCGGGGGTGATCC # Left flank : TTATCCAACAAATCATTCGCTTTGGCTTGATCGGAGTCCTTGCCACAGTGATTGACTTCGCTCTATTAACGGCCCTCACCGAATGGGGCTATGTTCACTACCTATTATCAGCGGGAATTGCTTTTGTTGTCGCTACGATTTTTAATTATCTTGCTAGCATGCGCTATGTTTTCGTGAGTCGTTTCTCTAAAGAAGAGCGGCTTCAGGAATTACTCCTGTTTGTTAGCCTGTCAGTGGTAGGTTTGATTCTCAACCAGTTCTTTATGTGGGCCTTCGTCGAGAAACTTGGCATCTATTATCTCCTAGCCAAAGTCCTAGCTACCTTCCTTGTGATGGCGTGGAACTTTATCTCAAGAAAATTATGGATTGAATAAGGCATGAGGTTATCACTGGTTAAAGTGACCGAGATGGCTTATAGTAGCTATAGGGGATTTTTTTAAAGTGAATGAAAATGGCCGAGGGATCAAAAAAGAAGCCTGATTTGATGGGATTTCTTTAGT # Right flank : TACTCAGTTAGAAAATCAAGGACATAATTATTACTAACTCTTTTCCGCCTAGACGGATACTTTTACTTCAGCCCAGATGAAAGCAATATTCCTTTTTTGATAATATTTCCCGATATCCCGAGGGCTATCACTCAGGGGAAGGATATAGTCGACGCGCTTTATATGGCCAGTGATTGTCTGGGGATCCATTTGGCAGATGCTTTAGAGCGTGGGCAAGCTTTGCCTGAGCCAAGTTCGATGTCTTCCTTGTCTTTAGATGATTTCCTTCCAGATGATGATGATTTCCATTTTGAGCGCAACCAATCCTTTATTTCTATGGTTTTAGTCGATCTCGATGATTATACCAGCAATTAAATCAGCTTTTCTAATCAGAAGCGAAGAGCTTTTATTTTAAAGCGTCCAAACTTTTGATACAATAAGATTAAAATAAGTAAGTGAAGGATGATATTATGGCCGGAAAAGTACGTGCAGCTTTGACCCATGCTCAAAATACCCAACTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 34811-36304 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHNA010000004.1 Aerococcus sanguinicola isolate As-34-B09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 34811 29 100.0 32 ............................. CAGCGAGTTTTCTGGGTACTTGATAGGGGTTC 34872 29 100.0 32 ............................. CACGGCCTAGGGACGCGCTATCCCCTTGTGCA 34933 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 34994 29 100.0 32 ............................. GACAACACGGGGAGCTACCTCCGCCAGGGGGA 35055 29 100.0 32 ............................. CTTTTCGTTTCCGATGTTTATCTTTAAGGCAC 35116 29 100.0 32 ............................. ACTTACTACTATTGTTACTAACTGGAAGCATA 35177 29 100.0 32 ............................. TCGCTTAACTAAGTTCGTTTGATTATCAGTAA 35238 29 96.6 32 ............................C ACAAAGTCTTCATCAGCAAATAGATCATACCC 35299 29 96.6 32 ............................C TAGACCGGGCGACTTCAAACATGCTTTACATG 35360 29 96.6 32 ............................C TTCAGGGAAGCTTGTCATCTCATTTAATGACT 35421 29 100.0 32 ............................. CGATTTGTGGATGTGATTAATGATTTGCTGGT 35482 29 100.0 32 ............................. CATCGAGCCAGAGAGGATGTCCTTTTTTCTAT 35543 29 89.7 32 ..........................TAG ATCCATAAGCTCCCTCATTTCTTTGGACAGAT 35604 29 100.0 32 ............................. ACTGGGGCAGTCATTAAACAGGGCGACACCAC 35665 29 93.1 32 ...T........................C TACGGCCTCAATATCAACTGGGGCGGGTCCTG 35726 29 96.6 32 ............................A AGTTCCTGATGACTTGAATGAATATGTGTTAG 35787 29 96.6 32 ..............C.............. CTAATTGAAATGTGATAAAGCTCCCGACCAGT 35848 29 96.6 32 ............C................ CCCGAACATCTGCGAAGCGGTCGCCTCGTAGA 35909 29 93.1 32 ............C...............C GCCCTCCAGTCGTGGTGGATAAGTACGCCAAT 35970 29 93.1 32 ............C...............C GGAGAATTAGGCCTGATGCACCTAAAGAAGTT 36031 29 93.1 32 ............C...............C AACTACTTTGGCATGAAGGCTAGCCCCAGTTG 36092 29 96.6 32 ............C................ GACGGCCACTATAGCTATGATATTGCGATTTT 36153 29 93.1 32 ............C...............C TCGTCCTCCTTAATTGCTCGATTGGCAACTAC 36214 29 96.6 32 ............C................ ATATAAGCATAAAGTTCATAAAACGTGAACTT 36275 29 100.0 0 ............................. | G [36292] ========== ====== ====== ====== ============================= ================================ ================== 25 29 97.1 32 CTTCTTCCCGCATATGCGGGGGTGATCCT # Left flank : GATCCTAAAAAAGATCAAATGATCGAAATAGGCGCTTTAAAGATAGATGGGTCAGAAGAGAACATCTTTCATTCTCTGATCGCTAATAAGAAAATCCCTGAGCAAATTCAAAAACTAACAGGGATTAGCCAGAAAGACATAGATGAAGACGGTAAAGATGAATCGCAAGTACTTGCAAAGCTTCTCGAATTTATCGAAGGTCAGGTTATTGTCGGTTACAATATCAATTTTGATATTAGTTTTATTAATGAGCAATTGAAAAAGATGGGACAGGAGAATTTATCTAATCCAATTCTTGATTTAAAGACTATTGTCAAAAAGGAGAAGATGTTTCTAAAAAATTTTCAATTGCAAACAGTTTTAGCGAGTTACGGGATCAATAAAAAAGTCCCCCACCGAGCCTTGGAGGATGTTAGATTAATGGCTGAGCTCATTTCTAAAGTGAATAAATTTCCAGTTTACTTAAAAAAGAAAGCCCGGTAATACAGGGATCCTTTAGT # Right flank : TATTAGCGTTTACCCTCTAAATATTGCAAATTGTAATATATAATTAAGAAAAGAAGTGAATAAAGGGAGGTATAAATATGTTTCCTGAGATTTTGAAGAGCTACAGAAAATCAAGAGGCTTGACTCAGAAAGAATTGGCGAATAGGCTACACGTTTCTCAACCTACTATCGGGAGTTGGGAAGTTGGCAGGACGGAGCCTAACCAAGAAATGCAGAAGAAAATAGCCGATTTTTTCGGCATTTCTGTAAATACCCTATTGGGAGTAGATGATAACGATTCGGTTGACTTGAAAGTGTTACTTAAAAATTCAAGCATGACATACGGCGGAAAAGAAATAAGCGATCACGACTTAAAAGTCTTGGAAGGCATAGTGGAATCGCTGCTTGGCGGTGATGAAGGTGGGGATAGATAGCTTAATTTCAGATTTAATCGCTAAATATAATACAAACGATCCTTTTGAGATAGCAGAAAATGAAGGAATACTCTTCTCCTTCTTCCC # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTTCCCGCATATGCGGGGGTGATCCT # Alternate repeat : CTTCTTCCCGCACATGCGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //