Array 1 18054-19119 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJK01000006.1 Campylobacter lanienae strain P0101 ERR460670.12216_2_81.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 18054 37 100.0 37 ..................................... TTATACAAACAAGCAATAAAAAAACACCTTGATTTAT 18128 37 100.0 37 ..................................... ATTAGGCGTAATCGCTTTAGGCGAGAAAGTTTCAAAA 18202 37 100.0 36 ..................................... TGAATATTTTAAATATAGTGAATTTGATTGTAAATG 18275 37 100.0 38 ..................................... TTATATCTAGATTTAAGGGCTTATGTAGTAAATGAGTT 18350 37 100.0 37 ..................................... TTAAAAATCATAGGGTTAAAAACATTTTAGGCAGTTT 18424 37 100.0 37 ..................................... TTAACTCTTTAGCTATTCTATTCTTGCTACCCATATA 18498 37 100.0 35 ..................................... GTAATTATGAAAGAATATAATAATTTAATCAAGAG 18570 37 100.0 36 ..................................... TTTAAACGAAGCTATTAAGACTTCATTATCATTTGG 18643 37 100.0 36 ..................................... TATAGTACATGTACCAGTTGCTTCAACAACTAATGC 18716 37 100.0 37 ..................................... TTGTAACAAAAGACAAAATAGAGAAAATCAAAGGTAA 18790 37 100.0 36 ..................................... TAATGGCGGGAAAGATTATGTTTATTATTTAGATAA 18863 37 100.0 36 ..................................... TGAGCGTGTGTATCACACTACCTAAAATTAAATTAT 18936 37 100.0 36 ..................................... TGGTACAAACTATTATAACTATATAAGATGGTATGA 19009 37 100.0 37 ..................................... GTGATGATTTGCTTATCATAACAACCCACTAAGAGTA 19083 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 15 37 100.0 37 GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Left flank : CTCTTGCTGTCTCATTGATGCTATTTACTGTGTCAGAATAAGCTTCTGTAAGCGTAGCACATCCATTAAAAATCCAACTACTAAAGCACCAATCACTAAACTTTTTTTCATTTTTCTTCCTTTGTTTAAAGTTCAACTATTTTAATAAATTTTTGGTAAATAATTATTTATAAATCTAAAATTTTTTAAATTTTTGATATTTTTACTCTCCTAAAAATTATTTAAAAACTTCTCTACATTATCACGCTCAAAATATTTATAATATTGTGTAGAGATACGCATTAAAATCATCTCTCTCTTAAACTTATCAGCTCGAGCTCATCACTTTGATAAATTTTATATAACGAAGCATTTACTAAATCTATATCATCAAAATTAGCCGCTATACCTAATTCTGGGGCAATTTCATCATTAAATAGCTCTATTTGCTCCCTTTTTTGTAAGCACAATTCTAAAAGCATTTATAAAGTCTTGAGTGTTTGTAAAATTTTTGTATTTGT # Right flank : CACCGCACAAAATGCCCTATTTTAGGGATTTTGCGCTTAGTTAATTGTAAAAATTTTTCCACTTAGAAAAAAATCGCAAAAAATGGCGAATTTGTGGAAAAATATGTTATAATTCAAGCGCAAATTATACCATAATCTAGCTTATAGCGTTTGAAATCACCACAAGGTGTTTTCATATCGGGGCAACTGCCTTTGGCACCCCCGGTTATTCTCTATCATCACAATAATTTTTAAACTCACATTGCGCACAAGCTGTAATGCTAGCTGAGCTTTGGGGGAAATATCCTTTTTCTAATAGATCTTGAATTTGCGTTAGTGTTTTATCAAAATAAGCTAAATCCTCTTTATAAATTTCAAAGATTTTAAATTTTAGATTATTTGAGTAGCATAAAATCACCCTATGAAAAGGCTTTTTAAAATATTTGCTAGCAAGTTTAGAATATGCTATAAGCTGCATTTTTGCGCCCTTGCTTAAAATTGGCTTTGATTGGTTTTTAAAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 451967-453132 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJK01000001.1 Campylobacter lanienae strain P0101 ERR460670.12216_2_81.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 451967 41 78.0 34 ....T.AGA.....C....T...T..T.........A.... TTTTGCAACCAGCAAACATCCTAATCATATTAAC 452042 41 100.0 34 ......................................... TTTTGCAACCTCTAAACATATAACTCATAACAGC 452117 41 100.0 34 ......................................... TTTTGCAACCAGTAAACATATTTTCCATATAAAT 452192 41 95.1 34 ...................T...T................. TTTCGCAACTAGAAAACATCCCACTCATCTTAAC 452267 41 92.7 34 .......................T...C........A.... TTCTGCAAACAGCAAACATCCCATTCATATCATC 452342 41 85.4 34 C.............C....T...T...C........A.... TTCTGCAAACAGCAAACATCTGACCCATATCAGT 452417 41 90.2 34 C.............C........T...C............. TATCGCAAAGGCAAAACATCCAGCTCATATTAAC 452492 41 95.1 34 ......................C................T. TTGTGCAATTTCTAAACATCTCACTCATATCAGT 452567 41 90.2 34 ..............C....T...T...C............. TTTCGCAAAAAGCAAACATTCCGCCCATATTAAC 452642 41 90.2 34 ..............C....T...T...C............. TCTTAACTTTATAAAACATAGAATTCATATACTT 452717 41 82.9 34 ....T.AGA..........T.........A......A.... TTCTGCAAACAGCAAACATCTCACTCATATCAGT 452792 41 92.7 34 ..............C........T........T........ TTGTACAACCTATAAACATCTGACCCATATCAGT 452867 41 92.7 34 .G............C....T..................... TTTCGCAACCAGCAAACATCTCACTCATATCAAT 452942 41 95.1 34 ..............C........T................. TTTTGCAACCAGAAAACATCCCACTCATATTAAC 453017 41 90.2 34 ..............C.A..T...T................. TTTCGCAATTATAAAACATCCAGCTCATATTAAC 453092 41 97.6 0 ..............C.......................... | ========== ====== ====== ====== ========================================= ================================== ================== 16 41 91.8 34 TACACTGCTTACATTCCAGCTATCAAGTGGTTGATTGAAAT # Left flank : TTAGAAGTGATATAGAAATCAAAGATCTACATCTTCTAAAAGTAGCAAATGACAAATATACTTGTATAATCTCTCTAAATTCCATTAATCCAATTGATATAAATCTTATCAAAAAAGAGCTATCAAAGCACGAAGAGCTAGTTCATATAATAGTGGAAATATATCCAAAAAAATATTAAATTAAAAAAATTAAGAGTTAATTATAACAGATAATTCTATCTTACTATGTAAAATTTATATATCCCTATTAAGTATTTTTTAAGCATATGGGGTAAAATTATTCTTAATTTTAATAACAAGAAGAAAATATGAACAAAATTTTATCTATTATATTATTTACTAGTGTTTGCTAAGCTTTAATAATTAGACCAAAGCAAGTAGCTTTAAAATGGTATCTCATCTTCATCATCATCTTTTTCCATCAAATCATACATATTAGTAAATTTAGGCTTATTCTCATCATTGATTTTGCAATCATCAAATATCCCACTCATTTTAGT # Right flank : TTTTCGCGACCAGCAAACATCCCACTCATATTAGTTACACTGCTTACATCCCAATTATCTATACCGCTAAAATCTTCACGCCCACTCCAAGCAAACAACTCACTCATATCAGTTATAGAGCTAGTATCTATATCGCCTAAATATATATCTTCATCATAAATTAAGCCCTTTAGCTCATCTTTGCTTTGTGGTGCATATAGTTTAATAGGAAAGAAATACTCCATATCCGCTACAGCTGTAATGTTGTAATCACTAGCAATACTCTTAGCTATGGAGCTATCTTGGCAGATGATACCAGCTATCATATCAATTGACAAATGCGTAGGCACAAGCGCCTCGGCCATCATTTTATCTATTTTAGATTGTTTGATGGATCTATCGGCGTGGTTCCAGTCTTTTGACATCACCTCACTCCAGCTGATAAACTGCGTATTCAGCAAGTCGCTAAGCTCATTTGCACATTCATATCTAGCAGCAGTGGCACTAGCGTTAGTAAATAT # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACACTGCTTACATTCCAGCTATCAAGTGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [14-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //